BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: ca05f1d35a293c85e14dfb5d04e211bd.SwissProt.fasta
15 sequences; 10,526 total letters
Query= ACIAD2014
Length=571
Score E
Sequences producing significant alignments: (Bits) Value
A5WFR0 ATP-dependent DNA helicase pif1 [Psychrobacter sp. (strain... 548 0.0
Q0R4F1 ATP-dependent DNA helicase PIF1 [Xenopus laevis] 271 7e-86
Q9H611 ATP-dependent DNA helicase PIF1 [Homo sapiens] 260 1e-81
Q1HG60 ATP-dependent DNA helicase PIF1 [Rattus norvegicus] 252 7e-79
Q80SX8 ATP-dependent DNA helicase PIF1 [Mus musculus] 251 4e-78
Q7ZV90 ATP-dependent DNA helicase PIF1 [Danio rerio] 249 1e-77
Q6MHJ5 ATP-dependent DNA helicase pif1 [Bdellovibrio bacteriovoru... 238 2e-75
Q5AXT5 ATP-dependent DNA helicase PIF1 [Emericella nidulans (stra... 223 4e-67
Q9UUA2 ATP-dependent DNA helicase pfh1 [Schizosaccharomyces pombe... 223 8e-67
P38766 ATP-dependent DNA helicase RRM3 [Saccharomyces cerevisiae ... 195 4e-57
Q0P9V4 ATP-dependent DNA helicase pif1 [Campylobacter jejuni subs... 182 1e-54
A6ZM04 ATP-dependent DNA helicase PIF1 [Saccharomyces cerevisiae ... 183 1e-52
P07271 ATP-dependent DNA helicase PIF1 [Saccharomyces cerevisiae ... 183 1e-52
Q57YG0 ATP-dependent DNA helicase PIF7 [Trypanosoma brucei brucei... 183 2e-52
Q38CE9 ATP-dependent DNA helicase PIF6 [Trypanosoma brucei brucei... 177 2e-50
>A5WFR0 ATP-dependent DNA helicase pif1 [Psychrobacter sp. (strain
PRwf-1)]
Length=659
Score = 548 bits (1412), Expect = 0.0
Identities = 311/659 (47%), Positives = 415/659 (63%), Gaps = 89/659 (14%)
Query 1 MKQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGM 60
MKQ TAL +LK G+NVFLTGSAG+GKTYTLN+YI+YL+ R+VPVA TASTGIAATHMNG+
Sbjct 1 MKQATALDILKTGKNVFLTGSAGSGKTYTLNEYIHYLRARRVPVATTASTGIAATHMNGI 60
Query 61 TIHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKY 120
TIH+W+GIGIKD L++ DL + +K LK+ L+ VLIIDEISMLHAKQLNLVNQVLK+
Sbjct 61 TIHSWSGIGIKDELTERDLVNLSRKKVLKDRLQETAVLIIDEISMLHAKQLNLVNQVLKH 120
Query 121 FKESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQ- 179
+++D+ FGGIQV+VAGDFFQLPPVG E NRDKF FMS AW++A F++CYL+EQHRQ
Sbjct 121 MRQNDKPFGGIQVVVAGDFFQLPPVGSRGESNRDKFAFMSQAWLDAGFKICYLSEQHRQQ 180
Query 180 -----DDEI-LNQILNAIRAQN-IQNEHKHALLTSRQHNIGETFTRLYTHNMDVDNINFQ 232
D +I L+ ILN IR +N + AL + ++ TRLYTHN++V+ IN
Sbjct 181 SGEGEDAQITLDNILNQIRGENGVSAAAIAALQNTFYQDVDVNRTRLYTHNVNVNKINEH 240
Query 233 HLNEIENESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSL 292
L +E E+ +NA+ G++KL+ETLK SVR +ELTLK AKVMF+KNN ++G NG++
Sbjct 241 ELALLEGETVTYNAIAHGDNKLVETLKKSVRTSDELTLKTGAKVMFIKNNSELGVSNGTM 300
Query 293 GEVIGF------------------EEDDEHGIL--------------------------- 307
GE+IGF +ED L
Sbjct 301 GELIGFTTIKPLKLSIATIDDGSADEDGSAEALDEALETLEDAEALAQNESDKPLVSTDR 360
Query 308 -PKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAAEINL 366
P V++ G ++ E E W +E+E+G+ +AS+ QIPL LAWAITIHKSQGMTL+AAEI+L
Sbjct 361 YPIVRLNSGRQVIAEGEEWIVEDESGEILASYTQIPLTLAWAITIHKSQGMTLDAAEIDL 420
Query 367 THTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKRFQELSQEAEDHFAEID 426
+ TFE GQGYVALSRLKSL GL+LLG N+ +L LD LA AD RF++LS EA+ F +I+
Sbjct 421 SKTFELGQGYVALSRLKSLEGLKLLGMNDLSLRLDPLARGADSRFKDLSLEAQQAFEDIE 480
Query 427 ---LADQHKAFIRHCGGTLNETEISRNEKKL----------------LKGAKQNYGSATL 467
L + H+ F+ GGTLN+ I+ EK+ L ++ +TL
Sbjct 481 REVLQESHERFVIASGGTLNKANIAAFEKEYKNRKKKQAQKLAQKDKLSNQLSDHSESTL 540
Query 468 DETRALFEEGYEIQDIAVERGLTPATIINHLARLQKEQ-GLDISVAHPGEEVVEQIRKLY 526
TR L EE I +IA RGL +TI+ H+ARL+++ L+ P E ++ ++ K
Sbjct 541 MATRILLEESLSIAEIAQSRGLAQSTIMGHVARLRRQDPSLNCEHLRPDEAILNKVSKAV 600
Query 527 KRVQKSKRPENFN---------------DDGSIKLKPIVELTSPRMGYDQVRLALLFIE 570
+ + P +FN D IKL+PI E ++ Y+ +RLAL+FI+
Sbjct 601 DAIIAAGDPNDFNAADDSTQSVKGGDDFDKQRIKLRPIYEYLKQQIDYNTIRLALVFID 659
>Q0R4F1 ATP-dependent DNA helicase PIF1 [Xenopus laevis]
Length=635
Score = 271 bits (692), Expect = 7e-86
Identities = 163/430 (38%), Positives = 247/430 (57%), Gaps = 16/430 (4%)
Query 2 KQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGMT 61
+Q L + +G NVF TGSAG GK+Y L + + L + TASTG+AA H+ G T
Sbjct 211 EQSLVLNTVLSGRNVFFTGSAGTGKSYLLKRIVGALPPKST--YATASTGVAACHIGGTT 268
Query 62 IHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYF 121
+H +AGIG + S + + +R +++H + + LIIDEISM+ + + + V +
Sbjct 269 LHAFAGIG-SGKASLEQCIELAKRPGVRQHWTSCKHLIIDEISMVEGEFFDKLEAVARAV 327
Query 122 KESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQDD 181
+ DE FGGIQ+IV GDF QLPPV ++ KFCF +W + LTE RQ D
Sbjct 328 RGKDEPFGGIQLIVCGDFLQLPPV--TQASSQTKFCFQGKSWRKCIHLTMELTEVRRQTD 385
Query 182 EILNQILNAIRAQNIQNEHKHALLTSRQHNI---GETFTRLYTHNMDVDNINFQHLNEIE 238
+ +L AIR ++ LL + H + G TRL TH DV+ N + L ++
Sbjct 386 KNFISLLQAIRLGRCTDDVARQLLQTTNHKVERDGILATRLCTHKDDVEITNERRLQQLP 445
Query 239 NESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKN-NFDMGYINGSLGEVIG 297
ESH + A LD + L++T+ + +++ LKK A+VM KN + G +NG+ G VI
Sbjct 446 GESHSYEA-LDSDPMLVKTINAQCPVNQQIQLKKGAQVMLAKNLDVSRGLVNGARGVVIK 504
Query 298 FEEDDEHGILPKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGM 357
FEE +++ LP V+ G T +++P+ W + G + S QQ+PL+LAWAI+IHKSQGM
Sbjct 505 FEEGNKN--LPVVRFLCGVTEVIKPDRWVFKGHGGIYL-SRQQLPLKLAWAISIHKSQGM 561
Query 358 TLEAAEINLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKRFQE---L 414
+L+ EI+L+ FE GQ YVALSR ++L GLR++ F+ + + + L+ + Q+ L
Sbjct 562 SLDCVEISLSRVFESGQAYVALSRARNLEGLRVMDFDPKVVRANPYVLQFYHQMQKERAL 621
Query 415 SQEAEDHFAE 424
Q + D F +
Sbjct 622 RQTSLDDFLD 631
>Q9H611 ATP-dependent DNA helicase PIF1 [Homo sapiens]
Length=641
Score = 260 bits (664), Expect = 1e-81
Identities = 161/426 (38%), Positives = 237/426 (56%), Gaps = 16/426 (4%)
Query 2 KQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGMT 61
+Q L+ + G+++F TGSAG GK+Y L + + L TASTG+AA H+ G T
Sbjct 210 EQAAVLRAVLKGQSIFFTGSAGTGKSYLLKRILGSLP--PTGTVATASTGVAACHIGGTT 267
Query 62 IHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYF 121
+H +AGIG + + +R +++ N Q L+IDEISM+ A + + V +
Sbjct 268 LHAFAGIG-SGQAPLAQCVALAQRPGVRQGWLNCQRLVIDEISMVEADLFDKLEAVARAV 326
Query 122 KESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQDD 181
++ ++ FGGIQ+I+ GDF QLPPV K + R FCF S +W LT+ RQ D
Sbjct 327 RQQNKPFGGIQLIICGDFLQLPPVTKGSQPPR--FCFQSKSWKRCVPVTLELTKVWRQAD 384
Query 182 EILNQILNAIRAQNIQNEHKHALLTSRQHNIGE---TFTRLYTHNMDVDNINFQHLNEIE 238
+ +L A+R +E L + H +G TRL TH DV N + L E+
Sbjct 385 QTFISLLQAVRLGRCSDEVTRQLQATASHKVGRDGIVATRLCTHQDDVALTNERRLQELP 444
Query 239 NESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKN-NFDMGYINGSLGEVIG 297
+ H+F A +D N +L TL + + L LK A+VM VKN + G +NG+ G V+G
Sbjct 445 GKVHRFEA-MDSNPELASTLDAQCPVSQLLQLKLGAQVMLVKNLSVSRGLVNGARGVVVG 503
Query 298 FEEDDEHGILPKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGM 357
FE + LP+V+ G T ++ + W+++ G+ + S QQ+PL+LAWA++IHKSQGM
Sbjct 504 FEAEGRG--LPQVRFLCGVTEVIHADRWTVQATGGQ-LLSRQQLPLQLAWAMSIHKSQGM 560
Query 358 TLEAAEINLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALAL---KADKRFQEL 414
TL+ EI+L F GQ YVALSR +SL GLR+L F+ A+ D L +R + L
Sbjct 561 TLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPMAVRCDPRVLHFYATLRRGRSL 620
Query 415 SQEAED 420
S E+ D
Sbjct 621 SLESPD 626
>Q1HG60 ATP-dependent DNA helicase PIF1 [Rattus norvegicus]
Length=637
Score = 252 bits (644), Expect = 7e-79
Identities = 157/426 (37%), Positives = 234/426 (55%), Gaps = 16/426 (4%)
Query 2 KQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGMT 61
+Q L+++ G+++F TGSAG GK+Y L + L TASTG+AA H+ G T
Sbjct 206 EQAAVLRMVLKGQSIFFTGSAGTGKSYLLKHILGSLP--PTGTVATASTGVAACHIGGTT 263
Query 62 IHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYF 121
+H +AGIG + + R +++ N Q L+IDEISM+ A + + V +
Sbjct 264 LHAFAGIG-SGQAPLAQCVALAHRPGVRQGWLNCQRLVIDEISMVEADFFDKLEAVARAV 322
Query 122 KESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQDD 181
++ + FGGIQ+I+ GDF QLPPV K + R FCF + +W + LTE RQ D
Sbjct 323 RQQKKPFGGIQLIICGDFLQLPPVTKGSQHPR--FCFQAKSWRKCVPVTLELTEVWRQAD 380
Query 182 EILNQILNAIRAQNIQNEHKHALLTSRQHNIGET---FTRLYTHNMDVDNINFQHLNEIE 238
+ +L A+R +E L + H +G TRL TH DV N + L E+
Sbjct 381 QTFISLLKAVRLGRCSDEVTRQLRATAAHKVGRDGIIATRLCTHQDDVALTNEKRLKELP 440
Query 239 NESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKN-NFDMGYINGSLGEVIG 297
+ H F A+ D + +L TL + L LK A+VM VKN G +NG+ G V+G
Sbjct 441 GDVHSFEAI-DSDPELSRTLDAQCPVGRVLQLKLGAQVMLVKNLAVSRGLVNGARGVVVG 499
Query 298 FEEDDEHGILPKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGM 357
FE + LP+V+ G T ++ + W+++ G+ + S QQ+PL+LAWA++IHKSQGM
Sbjct 500 FESEGRG--LPRVRFLCGITEVIRTDRWTVQVTGGQYL-SRQQLPLQLAWAMSIHKSQGM 556
Query 358 TLEAAEINLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKRFQE---L 414
+L+ EI+L F GQ YVALSR +SL GLR+L F+ + D+ L+ ++ L
Sbjct 557 SLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPTVVRCDSRVLQFYATLRQGRGL 616
Query 415 SQEAED 420
S E++D
Sbjct 617 SLESQD 622
>Q80SX8 ATP-dependent DNA helicase PIF1 [Mus musculus]
Length=650
Score = 251 bits (640), Expect = 4e-78
Identities = 156/426 (37%), Positives = 233/426 (55%), Gaps = 16/426 (4%)
Query 2 KQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGMT 61
+Q L+++ G+++F TGSAG GK+Y L + L TASTG+AA H+ G T
Sbjct 219 EQAAVLRMVLKGQSIFFTGSAGTGKSYLLKHILGSLP--PTGTVATASTGVAACHIGGTT 276
Query 62 IHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYF 121
+H +AGIG + + R +++ N Q L+IDEISM+ A + + V +
Sbjct 277 LHAFAGIG-SGQAPLAQCMALANRPGVRQGWLNCQRLVIDEISMVEADFFDKLEAVARAV 335
Query 122 KESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQDD 181
++ + FGGIQ+I+ GDF QLPPV K ++ +FCF + +W + LTE RQ D
Sbjct 336 RQQKKPFGGIQLIICGDFLQLPPVTKGSQQ--PQFCFQAKSWRRCVPVILELTEVWRQAD 393
Query 182 EILNQILNAIRAQNIQNEHKHALLTSRQHNIGE---TFTRLYTHNMDVDNINFQHLNEIE 238
+ +L A+R +E L + H +G TRL TH DV N + L +
Sbjct 394 QTFISLLQAVRLGRCSDEVTRQLRATAAHKVGRDGIVATRLCTHQDDVALTNEKWLKALP 453
Query 239 NESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKN-NFDMGYINGSLGEVIG 297
+ H F A+ D + +L TL + L LK A+VM VKN G +NG+ G V+G
Sbjct 454 GDVHSFEAI-DSDPELSRTLDAQCPVSRVLQLKLGAQVMLVKNLAVSRGLVNGARGVVVG 512
Query 298 FEEDDEHGILPKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGM 357
FE + LP+V+ G T ++ + W+++ G+ + S QQ+PL+LAWAI+IHKSQGM
Sbjct 513 FESEGRG--LPRVRFLCGITEVIRTDRWTVQVTGGQYL-SRQQLPLQLAWAISIHKSQGM 569
Query 358 TLEAAEINLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKRFQE---L 414
+L+ EI+L F GQ YVALSR +SL GLR+L F+ + D+ L ++ L
Sbjct 570 SLDCVEISLGRVFASGQAYVALSRARSLQGLRVLDFDPTVVRCDSRVLHFYATLRQGRGL 629
Query 415 SQEAED 420
S E++D
Sbjct 630 SLESQD 635
>Q7ZV90 ATP-dependent DNA helicase PIF1 [Danio rerio]
Length=639
Score = 249 bits (636), Expect = 1e-77
Identities = 158/417 (38%), Positives = 235/417 (56%), Gaps = 14/417 (3%)
Query 2 KQETA-LKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGM 60
K++TA L + +G+NVF TGSAG GK++ L + + L + TASTG+AA H+ G
Sbjct 209 KEQTAVLNAVLSGKNVFFTGSAGTGKSFLLKRIVGSLPPKST--YATASTGVAACHIGGT 266
Query 61 TIHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKY 120
T+H++AGIG + ++ + +R + H + + LIIDEISM+ A+ + + + +
Sbjct 267 TLHSFAGIGSGSAPLEQCIE-LAQRPGVLRHWTSCKHLIIDEISMVEAEFFDKLEAIARS 325
Query 121 FKESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQD 180
+ S E FGGIQ+IV GDF QLPPV K E+ FCF S +W + L E RQ
Sbjct 326 IRRSTEPFGGIQLIVCGDFLQLPPVTKGKEKAN--FCFQSRSWRKCIHMNMELMEVRRQT 383
Query 181 DEILNQILNAIRAQNIQNEHKHALLTSRQHNI---GETFTRLYTHNMDVDNINFQHLNEI 237
D+ +L A+R + E LL S H I G TRL TH DV+ N L ++
Sbjct 384 DKTFISLLQAVRVGRVTEEVTAQLLKSANHCIERDGILATRLCTHKDDVELTNENKLKQL 443
Query 238 ENESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKN-NFDMGYINGSLGEVI 296
+ AV D + L++T+ + L LK A+VM KN + G +NG+ G V+
Sbjct 444 PGVVRMYEAV-DSDPMLVQTIDAQSPVSRLLQLKVGAQVMLTKNLDVQRGLVNGARGVVV 502
Query 297 GFEEDDEHGILPKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQG 356
F+ ++ LP+V+ G +++ E W + G + S QQ+PL+LAWAI+IHKSQG
Sbjct 503 DFQPGNQG--LPRVRFLCGAVEVMKRERWMFKAPGGLYL-SRQQLPLKLAWAISIHKSQG 559
Query 357 MTLEAAEINLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKRFQE 413
MTL+ EI+L FE GQ YVALSR +SL GLR++ F+ + ++ + L KR ++
Sbjct 560 MTLDCVEISLARVFESGQAYVALSRARSLEGLRVMDFDPRVVQANQDVLIFYKRLRK 616
>Q6MHJ5 ATP-dependent DNA helicase pif1 [Bdellovibrio bacteriovorus
(strain ATCC 15356 / DSM 50701 / NCIMB 9529 / HD100)]
Length=439
Score = 238 bits (607), Expect = 2e-75
Identities = 140/414 (34%), Positives = 234/414 (57%), Gaps = 11/414 (3%)
Query 2 KQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGMT 61
+Q +AL LL++GENVFLTG AG+GK++ + Q++ L +++P+ ASTG AA + G T
Sbjct 36 EQASALDLLRSGENVFLTGGAGSGKSFLIRQFMRELDPKEMPIL--ASTGAAAVLLGGRT 93
Query 62 IHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYF 121
H++ G+GI + +D +R + K L L + +IIDEISM+ + L + + +
Sbjct 94 FHSFFGLGIMEGGADATYERASKDKRLMSRLRKVEGVIIDEISMIPGQALMIAEALSQRA 153
Query 122 KESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQDD 181
+ES +GG++VI GDF QLPPV +R+ +CF++ W + F+ L+ R D
Sbjct 154 RESKLPWGGMRVIAVGDFAQLPPVTHTGQRD---WCFLNGVWEVSGFQTVMLSHNQRVSD 210
Query 182 EILNQILNAIRAQNIQNEHKHALLTSRQ-HNIGETFTRLYTHNMDVDNINFQHLNEIENE 240
+ +L+ +R + + L Q H+ + TRL+ ++ + N + L EI+
Sbjct 211 NLFLDVLSDVRHGKVTERVREFLNEHVQDHDEDDPGTRLFPRKINAEKFNERKLAEIDET 270
Query 241 SHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLGEVIGFEE 300
++ G+++ +ETLK + E+L LK +VMF++N+ ++NG+ G V+
Sbjct 271 EVVIESIYSGSERHIETLKKASPIAEKLILKIGCQVMFLQNDPQRRWVNGTRGTVVDITA 330
Query 301 DDEHGILPKVKMTDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLE 360
D V+ G + V +++I++ G +A +Q PL LA+A TIHKSQG TL+
Sbjct 331 DQI-----TVRKDRGREVQVSKSSFAIQDAEGNIMAQVEQFPLTLAYATTIHKSQGATLD 385
Query 361 AAEINLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKRFQEL 414
+L+ +E GQ YVALSRL+S GL L+G+N +++ +D L K+F+ L
Sbjct 386 DLWCDLSQLWEPGQAYVALSRLRSAKGLHLIGWNPRSIIVDPKVLHFYKQFEGL 439
>Q5AXT5 ATP-dependent DNA helicase PIF1 [Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)]
Length=745
Score = 223 bits (568), Expect = 4e-67
Identities = 153/452 (34%), Positives = 234/452 (52%), Gaps = 60/452 (13%)
Query 1 MKQETALK-LLKAGENVFLTGSAGAGKTYTLNQYINYL--KVRKVP--VAVTASTGIAAT 55
+ Q+ LK +++ G+++F TGSAG GK+ + + I L K RK P +AVTASTG+AA
Sbjct 241 LSQKHVLKAVVEKGQSIFFTGSAGTGKSVLMREIIKKLRDKYRKEPDRIAVTASTGLAAC 300
Query 56 HMNGMTIHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVN 115
++ G+T+H++AGIG+ + +K++K+ + + +VL+IDE+SM+ + +
Sbjct 301 NIEGVTLHSFAGIGLGKEPVPELVKKIKKNQKARNRWLRTKVLVIDEVSMVDGDLFDKLE 360
Query 116 QVLKYFKESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTE 175
++ + + + FGGIQ++V GDFFQLPPV + R KF F + +W + LT
Sbjct 361 EIARLIRNNGRPFGGIQLVVTGDFFQLPPVPEGHNREA-KFSFAAASWNTSIQHTILLTH 419
Query 176 QHRQDDEILNQILNAIRAQNIQNEHKHALL-TSRQHNIGETF--TRLYTHNMDVDNINFQ 232
RQ D +LN +R + A SR + + T L+ +VDN N
Sbjct 420 VFRQRDPEFADMLNEMRLGKLSPRTIQAFKELSRPLDFHDALEATELFPTRAEVDNANSA 479
Query 233 HLNEIENESHQFNAVLDG---NDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYIN 289
+ + E+ FNAV G + + E L S+ AP+ + LKK ++VM +KN D +N
Sbjct 480 RMARLSGETMTFNAVDSGTIQDIQFREKLLSNCMAPQTIHLKKGSQVMLIKNMEDT-LVN 538
Query 290 GSLGEVIGF------------------------EEDDEHGILPKVK-------------- 311
GS+G V+ F +ED K+K
Sbjct 539 GSIGRVVAFMDEATFDFYVENENDFASGKFDEGDEDRAARARKKIKGMGHRDGGVTVTRK 598
Query 312 -------MTDGTT--LLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAA 362
DGT LL +PE+W IE G+ A QQ+PL LAWA++IHK+QG TL+
Sbjct 599 WPLVCFIQPDGTERHLLCQPESWKIELPNGEVQAQRQQVPLILAWALSIHKAQGQTLQRV 658
Query 363 EINLTHTFEKGQGYVALSRLKSLTGLRLLGFN 394
+++L FEKGQ YVALSR S GL++L F+
Sbjct 659 KVDLGKVFEKGQAYVALSRATSKAGLQVLRFD 690
>Q9UUA2 ATP-dependent DNA helicase pfh1 [Schizosaccharomyces pombe
(strain 972 / ATCC 24843)]
Length=805
Score = 223 bits (568), Expect = 8e-67
Identities = 149/441 (34%), Positives = 230/441 (52%), Gaps = 64/441 (15%)
Query 15 NVFLTGSAGAGKTYTLNQYINYLKVR----KVPVAVTASTGIAATHMNGMTIHTWAGIGI 70
++F TGSAG GK+ L + I LK + VAVTASTG+AA ++ G+T+H++AG+G+
Sbjct 327 SIFFTGSAGTGKSVLLRKIIEVLKSKYRKQSDRVAVTASTGLAACNIGGVTLHSFAGVGL 386
Query 71 KDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYFKESDEAFGG 130
D + ++K+ K +VLIIDE+SM+ A+ ++ + +V + ++ + FGG
Sbjct 387 ARESVDLLVSKIKKNKKCVNRWLRTRVLIIDEVSMVDAELMDKLEEVARVIRKDSKPFGG 446
Query 131 IQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQDDEILNQILNA 190
IQ+++ GDFFQLPPV +N + + KFCF S W A LT RQ DE ++LN
Sbjct 447 IQLVLTGDFFQLPPVPENGKES--KFCFESQTWKSALDFTIGLTHVFRQKDEEFVKMLNE 504
Query 191 IRAQNIQNEHKH---ALLTSRQHNIGETFTRLYTHNMDVDNINFQHLNEIENESHQFNAV 247
+R + +E L + ++ G T L+ +V+ N + +I F A+
Sbjct 505 LRLGKLSDESVRKFKVLNRTIEYEDGLLPTELFPTRYEVERSNDMRMQQINQNPVTFTAI 564
Query 248 LDG---NDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLGEVIGFEEDDEH 304
G + + + L AP L LK +A+VM +K N D +NGSLG+VIGF +D+ +
Sbjct 565 DSGTVRDKEFRDRLLQGCMAPATLVLKVNAQVMLIK-NIDDQLVNGSLGKVIGFIDDETY 623
Query 305 GI-------------------------------------------------LPKVKMTDG 315
+ L + K+ +G
Sbjct 624 QMEKKDAEMQGRNAFEYDSLDISPFDLPDVKQKKYKLIAMRKASSTAIKWPLVRFKLPNG 683
Query 316 --TTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAAEINLTHTFEKG 373
T++V+ ETW+IE G+ AS QIPL LA+AI+IHK+QG TL+ +++L FEKG
Sbjct 684 GERTIVVQRETWNIELPNGEVQASRSQIPLILAYAISIHKAQGQTLDRVKVDLGRVFEKG 743
Query 374 QGYVALSRLKSLTGLRLLGFN 394
Q YVALSR + GL++L F+
Sbjct 744 QAYVALSRATTQEGLQVLNFS 764
>P38766 ATP-dependent DNA helicase RRM3 [Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)]
Length=723
Score = 195 bits (495), Expect = 4e-57
Identities = 118/309 (38%), Positives = 176/309 (57%), Gaps = 16/309 (5%)
Query 1 MKQETALKLL-KAGENVFLTGSAGAGKTYTLNQYINYLK--VRKVPVAVTASTGIAATHM 57
M+QE + L+ K NVF TGSAG GK+ L I L K +A+TASTG+AA +
Sbjct 234 MEQERVVNLIVKKRTNVFYTGSAGTGKSVILQTIIRQLSSLYGKESIAITASTGLAAVTI 293
Query 58 NGMTIHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQV 117
G T+H W+GIGI ++ D +K+++ +K L +VLIIDEISM+ L+ + Q+
Sbjct 294 GGSTLHKWSGIGIGNKTIDQLVKKIQSQKDLLAAWRYTKVLIIDEISMVDGNLLDKLEQI 353
Query 118 LKYFKESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQH 177
+ +++D+ FGGIQ+++ GDFFQLPPV K DE N KFCF S+ W + LT+
Sbjct 354 ARRIRKNDDPFGGIQLVLTGDFFQLPPVAKKDEHNVVKFCFESEMWKRCIQKTILLTKVF 413
Query 178 RQDDEILNQILNAIR--------AQNIQNEHKHALLTSRQHNIGETFTRLYTHNMDVDNI 229
RQ D L ILNAIR A+ I+N ++ + G T LY +V+
Sbjct 414 RQQDNKLIDILNAIRYGELTVDIAKTIRNLNRDI-----DYADGIAPTELYATRREVELS 468
Query 230 NFQHLNEIENESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYIN 289
N + L + + ++F AV + ++ L SS+ + + LK+ A+VM +KN D+ +N
Sbjct 469 NVKKLQSLPGDLYEFKAVDNAPERYQAILDSSLMVEKVVALKEDAQVMMLKNKPDVELVN 528
Query 290 GSLGEVIGF 298
GSLG+V+ F
Sbjct 529 GSLGKVLFF 537
Score = 61.6 bits (148), Expect = 6e-13
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 0/96 (0%)
Query 319 LVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAAEINLTHTFEKGQGYVA 378
L+ PE + I+ QIPL L WA++IHK+QG T++ +++L FE GQ YVA
Sbjct 627 LMVPERFPIDIPRENVGLERTQIPLMLCWALSIHKAQGQTIQRLKVDLRRIFEAGQVYVA 686
Query 379 LSRLKSLTGLRLLGFNEQALELDALALKADKRFQEL 414
LSR ++ L++L F+ + + KR + L
Sbjct 687 LSRAVTMDTLQVLNFDPGKIRTNERVKDFYKRLETL 722
>Q0P9V4 ATP-dependent DNA helicase pif1 [Campylobacter jejuni
subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)]
Length=447
Score = 182 bits (463), Expect = 1e-54
Identities = 135/411 (33%), Positives = 225/411 (55%), Gaps = 36/411 (9%)
Query 7 LKLLKAGENVFLTGSAGAGKTYTLNQYI-NYLKVRKVPVAVTASTGIAATHMNGMTIHTW 65
L+ + A +NVFL+G AG GK++ N+ I +Y K +K+ +A+ S+ ++A ++ G+T+H++
Sbjct 5 LEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIAL-GSSALSAFNIGGVTLHSF 63
Query 66 AGIGIKDRLS-----DDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKY 120
+G D + D + K+ ++ LKE L+ +++IIDEISM+ A ++
Sbjct 64 FCLGYCDDMMKLSVLDRNQKQKEKLTKLKELLKTIELIIIDEISMVSANVFEMIG----- 118
Query 121 FKESDEAFGGIQVIVAGDFFQLPPVGKNDER---NRDKFCFMSDAWVEAKFRVCYLTEQH 177
F+ + F G +++V GDFFQLPPV K + N + F S W + F+ L++
Sbjct 119 FRLKNSQFNG-KILVVGDFFQLPPVIKEKKETLFNHSYYAFSSFFWQDLNFKNIKLSQPK 177
Query 178 RQDDEILNQILNAIRAQNIQNEHKHALLTSRQ------HNIGETFTRLYTHNMDVDNINF 231
R + L+ IR Q +E + S + N+ + +T L N V+NIN
Sbjct 178 RTQNMEFYNHLSLIR-QGFLDEKILSFFESLRIDYKELENLEDDYTLLCGINKKVNNINQ 236
Query 232 QHLNEIENESHQFNAVLDGNDKLL--ETLKSSVRAP---EELTLKKHAKVMFVKNNFDMG 286
+ L+++E F A + DK + E L S +R+ EEL +K A+++F NN+D
Sbjct 237 EKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILEELNIKIGARIIFCVNNWDKN 296
Query 287 YINGSLGEVIGFEEDDEHGILPKVKMTDGTTLLVEPETWSIEN--EAGKS-----IASFQ 339
Y NG G + ++E + +K +G +L+EP T+ +E ++GK +AS
Sbjct 297 YYNGEQGIIEDILYEEEKIYISIIK-NNGMKILLEPYTFFMEELEQSGKDFVVNILASVT 355
Query 340 QIPLRLAWAITIHKSQGMTLEAAEINLTHTFEKGQGYVALSRLKSLTGLRL 390
Q P++LA+AITIHKSQGM++E ++ H FE GQ YVALSR + L++
Sbjct 356 QFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLYVALSRATNPNTLKI 406
>A6ZM04 ATP-dependent DNA helicase PIF1 [Saccharomyces cerevisiae
(strain YJM789)]
Length=859
Score = 183 bits (465), Expect = 1e-52
Identities = 120/311 (39%), Positives = 179/311 (58%), Gaps = 10/311 (3%)
Query 2 KQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLK--VRKVPVAVTASTGIAATHMNG 59
+QE+ +KL + G N+F TGSAG GK+ L + I LK + VAVTASTG+AA ++ G
Sbjct 240 EQESIIKLAENGHNIFYTGSAGTGKSILLREMIKVLKGIYGRENVAVTASTGLAACNIGG 299
Query 60 MTIHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLK 119
+TIH++AGIG+ +D K+++ + EN L++DEISML A+ L+ ++ + +
Sbjct 300 ITIHSFAGIGLGKGDADKLYKKVRRSRKHLRRWENIGALVVDEISMLDAELLDKLDFIAR 359
Query 120 YFKESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQ 179
+++ + FGGIQ+I GDFFQLPPV K D KF F S AW E L + RQ
Sbjct 360 KIRKNHQPFGGIQLIFCGDFFQLPPVSK-DPNRPTKFAFESKAWKEGVKMTIMLQKVFRQ 418
Query 180 DDEI-LNQILNAIRAQNIQNE-HKHALLTSRQHNIGETF-TRLYTHNMDVDNINFQHLNE 236
++ +LN +R NI +E + SR E LY+ M+V+ N L++
Sbjct 419 RGDVKFIDMLNRMRLGNIDDETEREFKKLSRPLPDDEIIPAELYSTRMEVERANNSRLSK 478
Query 237 IENESHQFNAVLDG---NDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLG 293
+ + H FNA+ G +++L E L + AP+EL LK A+VM VK N D +NGSLG
Sbjct 479 LPGQVHIFNAIDGGALEDEELKERLLQNFLAPKELHLKVGAQVMMVK-NLDATLVNGSLG 537
Query 294 EVIGFEEDDEH 304
+VI F + + +
Sbjct 538 KVIEFMDPETY 548
Score = 90.5 bits (223), Expect = 6e-22
Identities = 54/131 (41%), Positives = 78/131 (60%), Gaps = 12/131 (9%)
Query 307 LPKVKMTDGTT--LLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAAEI 364
L + K +D +T +LVEPE W+IE+E K + S Q+PL LAW+++IHKSQG TL ++
Sbjct 658 LVRFKASDMSTRMVLVEPEDWAIEDENEKPLVSRVQLPLMLAWSLSIHKSQGQTLPKVKV 717
Query 365 NLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKR---FQELSQEAEDH 421
+L FEKGQ YVALSR S GL++L F D +KA ++ F AE
Sbjct 718 DLRRVFEKGQAYVALSRAVSREGLQVLNF-------DRTRIKAHQKVIDFYLTLSSAESA 770
Query 422 FAEIDLADQHK 432
+ +++ +Q K
Sbjct 771 YKQLEADEQVK 781
Score = 19.2 bits (38), Expect = 8.4
Identities = 6/11 (55%), Positives = 11/11 (100%), Gaps = 0/11 (0%)
Query 524 KLYKRVQKSKR 534
KLYK+V++S++
Sbjct 317 KLYKKVRRSRK 327
>P07271 ATP-dependent DNA helicase PIF1 [Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)]
Length=859
Score = 183 bits (465), Expect = 1e-52
Identities = 120/311 (39%), Positives = 179/311 (58%), Gaps = 10/311 (3%)
Query 2 KQETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLK--VRKVPVAVTASTGIAATHMNG 59
+QE+ +KL + G N+F TGSAG GK+ L + I LK + VAVTASTG+AA ++ G
Sbjct 240 EQESIIKLAENGHNIFYTGSAGTGKSILLREMIKVLKGIYGRENVAVTASTGLAACNIGG 299
Query 60 MTIHTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLK 119
+TIH++AGIG+ +D K+++ + EN L++DEISML A+ L+ ++ + +
Sbjct 300 ITIHSFAGIGLGKGDADKLYKKVRRSRKHLRRWENIGALVVDEISMLDAELLDKLDFIAR 359
Query 120 YFKESDEAFGGIQVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQ 179
+++ + FGGIQ+I GDFFQLPPV K D KF F S AW E L + RQ
Sbjct 360 KIRKNHQPFGGIQLIFCGDFFQLPPVSK-DPNRPTKFAFESKAWKEGVKMTIMLQKVFRQ 418
Query 180 DDEI-LNQILNAIRAQNIQNE-HKHALLTSRQHNIGETF-TRLYTHNMDVDNINFQHLNE 236
++ +LN +R NI +E + SR E LY+ M+V+ N L++
Sbjct 419 RGDVKFIDMLNRMRLGNIDDETEREFKKLSRPLPDDEIIPAELYSTRMEVERANNSRLSK 478
Query 237 IENESHQFNAVLDG---NDKLLETLKSSVRAPEELTLKKHAKVMFVKNNFDMGYINGSLG 293
+ + H FNA+ G +++L E L + AP+EL LK A+VM VK N D +NGSLG
Sbjct 479 LPGQVHIFNAIDGGALEDEELKERLLQNFLAPKELHLKVGAQVMMVK-NLDATLVNGSLG 537
Query 294 EVIGFEEDDEH 304
+VI F + + +
Sbjct 538 KVIEFMDPETY 548
Score = 90.5 bits (223), Expect = 6e-22
Identities = 54/131 (41%), Positives = 78/131 (60%), Gaps = 12/131 (9%)
Query 307 LPKVKMTDGTT--LLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAAEI 364
L + K +D +T +LVEPE W+IE+E K + S Q+PL LAW+++IHKSQG TL ++
Sbjct 658 LVRFKASDMSTRMVLVEPEDWAIEDENEKPLVSRVQLPLMLAWSLSIHKSQGQTLPKVKV 717
Query 365 NLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALALKADKR---FQELSQEAEDH 421
+L FEKGQ YVALSR S GL++L F D +KA ++ F AE
Sbjct 718 DLRRVFEKGQAYVALSRAVSREGLQVLNF-------DRTRIKAHQKVIDFYLTLSSAESA 770
Query 422 FAEIDLADQHK 432
+ +++ +Q K
Sbjct 771 YKQLEADEQVK 781
Score = 19.2 bits (38), Expect = 8.4
Identities = 6/11 (55%), Positives = 11/11 (100%), Gaps = 0/11 (0%)
Query 524 KLYKRVQKSKR 534
KLYK+V++S++
Sbjct 317 KLYKKVRRSRK 327
>Q57YG0 ATP-dependent DNA helicase PIF7 [Trypanosoma brucei brucei
(strain 927/4 GUTat10.1)]
Length=992
Score = 183 bits (465), Expect = 2e-52
Identities = 136/462 (29%), Positives = 219/462 (47%), Gaps = 82/462 (18%)
Query 15 NVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGMTIHTWAGIGIKDRL 74
+VFLTG AG GK++ L I L + VTA+TG+AA ++ G T+H+++G G D+
Sbjct 232 SVFLTGGAGTGKSHLLRAIIAALPLSTT--FVTATTGLAALNLGGTTLHSFSGCGFVDQH 289
Query 75 SDDD---LKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYFKESDEAFGGI 131
+ + + RK + + +VL++DE+SML A +++ V ++ + + FGGI
Sbjct 290 TSTHQMVYRNVLGRKKARANWRKCRVLVVDEVSMLDAWFFDMLEYVARHIRGCRKPFGGI 349
Query 132 QVIVAGDFFQLPPVGKNDERNRDKFCFMSDAWVEAKFRVCYLTEQHRQDDE----ILNQI 187
Q++++GDF QLPPV K+ + + CF + +W VC L+ Q RQ D+ +LN++
Sbjct 350 QLVLSGDFLQLPPVNKHSPKQETRLCFEAKSWPRVNPLVCTLSHQFRQKDKEFFSLLNEV 409
Query 188 ---------------LNAIRAQNIQNEHKHAL-----------------LTSRQHNIGET 215
L+ I + +E K L T RQ G
Sbjct 410 RVGALTAPSLGLLSSLSVITTVSFVDEEKLKLKREVGAEAVDIITDSKGRTRRQRQDG-- 467
Query 216 FTRLYTHNMDVDNINFQHLNEIENESHQFNAVLDGNDKLLETLKSSVRAPEELTLKKHAK 275
FT L +VD IN + E++ E + + G L S+V +++ +
Sbjct 468 FTILRARRSEVDAINTEKFGELDTEIYSYKGAHRGEGHFPSDLPSTV------SVRAGCR 521
Query 276 VMFVKN-NFDMGYINGSLGEVIGF------------EEDD-----EHGILPKVKM----- 312
VM + N + G NGS+G V F +DD +H +LP V+
Sbjct 522 VMLLANLDLSAGLANGSIGTVESFVSSKLHQTANPSTKDDLQHLADHMMLPVVRFDHKGK 581
Query 313 ---------TDGTTLLVEPETWSIENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAAE 363
G +++EP W++ + ++ QIPL+LA+AITIHKSQGM+L
Sbjct 582 QGPGDGGGAAAGRLVVIEPHRWTM-RQGDSDVSCSIQIPLQLAYAITIHKSQGMSLSHVN 640
Query 364 INLTHTFEKGQGYVALSRLKSLTGLRLLGFNEQALELDALAL 405
++ FE+GQ YVALSR + L + F+ Q + + AL
Sbjct 641 VDFAGIFEEGQAYVALSRCTDVANLVIENFDAQRVNPNIKAL 682
>Q38CE9 ATP-dependent DNA helicase PIF6 [Trypanosoma brucei brucei
(strain 927/4 GUTat10.1)]
Length=796
Score = 177 bits (448), Expect = 2e-50
Identities = 145/460 (32%), Positives = 217/460 (47%), Gaps = 46/460 (10%)
Query 3 QETALKLLKAGENVFLTGSAGAGKTYTLNQYINYLKVRKVPVAVTASTGIAATHMNGMTI 62
Q A +L+ G NVF+TGSAG GKT L + + R VTASTG++A + G TI
Sbjct 238 QIVATRLVCTGSNVFITGSAGTGKTEWLLHLVRNVLPRDDRTVVTASTGMSARLLGGCTI 297
Query 63 HTWAGIGIKDRLSDDDLKRMKERKYLKEHLENAQVLIIDEISMLHAKQLNLVNQVLKYFK 122
H++AGIG + + R+K + + Q LIIDEI + ++++++ + +
Sbjct 298 HSFAGIGRGEGGFNRVYNRVKSKPEVVRAWRQCQTLIIDEIGNISPDTFSMIDEIARSLR 357
Query 123 ESDE-AFGGIQVIVAGDFFQLPPVGKNDERN-----------------RDKFCFMSDAWV 164
+ E FGGIQVI+ GDF QLPPV RN + K+CF + W
Sbjct 358 GAPEKPFGGIQVILLGDFLQLPPVDSPKARNEWTNGNDTDTDSNPIPGKLKWCFETATWE 417
Query 165 EAKFRVCYLTEQHRQ-DDEILNQILNAI-------RAQNIQNEHKHALLTSRQHNIGETF 216
K + + +RQ +D L I R + I NE + R H I T
Sbjct 418 SLKLALVGFRKSYRQMNDPDFALCLEDIRFGRYTRRVERILNECSTRQIKER-HGIEPTL 476
Query 217 TRLYTHNMDVDNINFQHLNEIEN------ESHQFNAVLDGNDKLLETLKSSVRAPEELTL 270
+ + N + L +E+ ES + A+ N L+ V + L L
Sbjct 477 --IVARRDEATEYNAERLKMLEDVHFHRYESEDYAAIPGMN------LEKEVSLQQLLEL 528
Query 271 KKHAKVMFVKNNFDMGYI-NGSLGEVIGFEEDDEHGILPKV--KMTDGTTLLVEPETWSI 327
+ A+V+ + + D ++ NG G V+ F E LP V + G +LV + +
Sbjct 529 RIGAQVVLLASLPDAPHLSNGDQGVVVSFAEQTRGPALPVVCFATSGGEEVLVPRVSMEV 588
Query 328 ENEAGKSIASFQQIPLRLAWAITIHKSQGMTLEAAEINLTHT-FEKGQGYVALSRLKSLT 386
G+ IA+ QIPL+L+WAIT+H++QGMTL + L F+ GQ YVALSR++S
Sbjct 589 LGPEGRVIATRTQIPLQLSWAITVHRAQGMTLPLVSVRLNKCFFDCGQAYVALSRVRSRE 648
Query 387 GLRLLGFNEQALELDALALK-ADKRFQELSQEAEDHFAEI 425
L L F+ A+ DA A+ +K F Q ED E+
Sbjct 649 DLMLTAFDPSAIFADARAVAFYEKNFPAQRQSVEDTECEL 688
Lambda K H a alpha
0.318 0.134 0.380 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4988290
Database: ca05f1d35a293c85e14dfb5d04e211bd.SwissProt.fasta
Posted date: May 30, 2024 8:50 AM
Number of letters in database: 10,526
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
