BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: b0bc261ff4e766bb548b997ba365c793.SwissProt.fasta
           3 sequences; 1,603 total letters



Query= ACIAD2017

Length=394
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P46372 Uncharacterized 47.3 kDa protein in thcA 5'region [Rhodoco...  132     1e-38
A0QTU7 Propane 2-monooxygenase operon transcriptional activator M...  68.2    3e-16
G3XGC1 Propane 2-monooxygenase operon transcriptional activator M...  65.9    2e-15


>P46372 Uncharacterized 47.3 kDa protein in thcA 5'region [Rhodococcus 
erythropolis]
Length=437

 Score = 132 bits (333),  Expect = 1e-38
 Identities = 96/346 (28%), Positives = 169/346 (49%), Gaps = 30/346 (9%)

Query  35   IASSWQRSATAEIPKERLAAP--LTTQQSRKNTTALDFALER--CEEDLRHVAEQSSMVI  90
            +  SW RS    +  + +  P  L   +  K  +A   +L R    + L   A ++ ++I
Sbjct  56   VLESWMRSRNKGVNPDVVGNPEMLEGLELEKYRSAHPMSLIRPVIRKLLVEDAAETGLLI  115

Query  91   AVGDVGSTIIWTAPSLQMRSAAERVHFIAGGQWREELVGTNALALSLKTQKSSCVFSNEH  150
            A+ D    ++W       +  A  ++F+ G  W E+ VGTNA   +L    +  +F +EH
Sbjct  116  AISDAHGRLLWVEGDNSAKDKALSMNFVEGADWSEDRVGTNAPGTALALDHAVQIFGSEH  175

Query  151  YMESVHDWVCYAAPIIDPYSKQPIGVVDLSTTWKNHNSLGVLAAERCASIIQ---SALLE  207
            +  +VHDW C AAP+ DP + Q +G +D++   +       +A     S+I+   +A   
Sbjct  176  FNRTVHDWSCSAAPVHDPTTGQILGAIDITGGPR-------VAVPEVLSLIRATVAAAES  228

Query  208  QQRQHLY------------IRAFSV--PQVVFNGKNLVLTPRQIEILSILALCPQGLNLE  253
            + R HL             +  F    P +V  G  + ++ R  EIL +L+  P+GL+ +
Sbjct  229  ELRFHLLNSPIPLSATAPRLETFGAGRPTLVRGGDRIPISQRHAEILLLLSEHPEGLSSD  288

Query  254  KLHHALYGERKVSIGTLKAEMSQLRDILGG-LLGSRPYRLLAHVEADFLQAEQALDAGYV  312
             L   L  E ++   T++AEMS+LR + G   L SRPYR++     D      ALD G  
Sbjct  289  HL-AVLLDEGELDAVTIRAEMSRLRKVFGADRLASRPYRIITEFTTDVGDVRAALDRGDA  347

Query  313  SSALQLYTGVFLSKTDSPFLCAWRDCLESRLSDAIFKAKETDMLLK  358
            ++A++LY+G  L+ + SP +   R+ L +R+  A+ +  + ++L +
Sbjct  348  ATAMKLYSGPVLAGSASPGIEEVREELRTRVQAALLRGGDANLLAR  393


>A0QTU7 Propane 2-monooxygenase operon transcriptional activator 
MimR [Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)]
Length=583

 Score = 68.2 bits (165),  Expect = 3e-16
 Identities = 47/193 (24%), Positives = 86/193 (45%), Gaps = 8/193 (4%)

Query  15   DQLRRQNSLSPQNAEKLGQSIASSWQRSATAEIPKERLAAPLTTQQSRKNTT--ALDFAL  72
            +Q     +L P   + +  S+ +SWQRS    +  +R+  P             A    L
Sbjct  16   EQFLSTGALQP---DAVASSVLNSWQRSRELHVHPDRVELPYVRDPDTDTPLMHAAAPVL  72

Query  73   ERCEEDLRHVAEQSSMVIAVGDVGSTIIWTAPSLQMRSAAERVHFIAGGQWREELVGTNA  132
             R  EDL   ++QS  V+     G  +   A   +     + V    G  + EE  GTN 
Sbjct  73   RRMAEDL---SDQSVSVVLTSADGLVLDRVAADTEFERVLDDVRLARGYSYAEEFAGTNG  129

Query  133  LALSLKTQKSSCVFSNEHYMESVHDWVCYAAPIIDPYSKQPIGVVDLSTTWKNHNSLGVL  192
            +  +L+T + + +  +EHY+ ++    C  +PI +P +++ +GV+DL+   +  + L  +
Sbjct  130  IGTALETGRPAFIRGSEHYVGTLGGLACAGSPIREPVTRRILGVIDLTCRARQADPLLFV  189

Query  193  AAERCASIIQSAL  205
             A+   S I+  L
Sbjct  190  LAKSAGSQIEDRL  202


>G3XGC1 Propane 2-monooxygenase operon transcriptional activator 
MimR [Mycolicibacterium goodii]
Length=583

 Score = 65.9 bits (159),  Expect = 2e-15
 Identities = 48/199 (24%), Positives = 89/199 (45%), Gaps = 8/199 (4%)

Query  12   NSIDQLRRQNSLSPQNA---EKLGQSIASSWQRSATAEIPKERLAAPLTTQQSRKNTT--  66
            +S+D  R +       A   + +  S+ +SWQRS   ++  +R+  P             
Sbjct  7    SSVDAQRAREQFLSAGALQPDAVAPSVLNSWQRSRELQVHPDRVDLPYLRDPDTDTPLMH  66

Query  67   ALDFALERCEEDLRHVAEQSSMVIAVGDVGSTIIWTAPSLQMRSAAERVHFIAGGQWREE  126
            A    L R  EDL   ++Q+  V+     G  +   A   +     + V    G  + EE
Sbjct  67   AAAPVLRRIAEDL---SDQAVSVVLTSADGLVLDRIAADTEFERILDDVRLARGYSYAEE  123

Query  127  LVGTNALALSLKTQKSSCVFSNEHYMESVHDWVCYAAPIIDPYSKQPIGVVDLSTTWKNH  186
              GTN +  +L+T + + +  +EHY+ ++    C  +PI +P +++ +GVVDL+   +  
Sbjct  124  FAGTNGIGTALETGQPAFIRGSEHYVGTLGGLACAGSPIREPVTRRILGVVDLTCWARQA  183

Query  187  NSLGVLAAERCASIIQSAL  205
            + L  + A+   S I+  L
Sbjct  184  DPLLFVLAKSAGSQIEDRL  202


 Score = 18.5 bits (36),  Expect = 1.4
 Identities = 11/36 (31%), Positives = 20/36 (56%), Gaps = 1/36 (3%)

Query  355  MLLKHLARFPEAIDAVERLMELLPLDHPAHQSLIKY  390
            MLL  L+R    +DA E + +L  L  P + + +++
Sbjct  472  MLLNELSRGEARMDA-EAMRQLAKLPWPGNIAQLRH  506



Lambda      K        H        a         alpha
   0.320    0.132    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 524982


  Database: b0bc261ff4e766bb548b997ba365c793.SwissProt.fasta
    Posted date:  May 19, 2024  9:06 PM
  Number of letters in database: 1,603
  Number of sequences in database:  3



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40