BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: b973bf49bc12e7a1ae10c0bca7716de3.SwissProt.fasta
4 sequences; 920 total letters
Query= ACIAD2023
Length=235
Score E
Sequences producing significant alignments: (Bits) Value
O28519 Uncharacterized membrane protein AF_1755 [Archaeoglobus fu... 82.8 2e-23
O25889 Uncharacterized membrane protein HP_1331 [Helicobacter pyl... 65.9 4e-17
P76630 Inner membrane protein YgaZ [Escherichia coli (strain K12)] 65.5 7e-17
Q9ZJQ3 Uncharacterized membrane protein jhp_1251 [Helicobacter py... 64.3 1e-16
>O28519 Uncharacterized membrane protein AF_1755 [Archaeoglobus
fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126
/ VC-16)]
Length=219
Score = 82.8 bits (203), Expect = 2e-23
Identities = 70/220 (32%), Positives = 109/220 (50%), Gaps = 8/220 (4%)
Query 10 TLSYLRDFLTGAIKITPLCLAVLPWGLLAGSMAIQAGLSPLQAIGMSAFVFAGAAQLVSL 69
+LS F G + P+ +A +P G +A G S ++A+ S +FAGA+Q +L
Sbjct 3 SLSKSAMFRKGLVYSFPIVMAYIPVAFTFGVLARTLGFSEVEAMLASLLIFAGASQF-AL 61
Query 70 GMIMAGAPLVSIVISVFLITSQHYLYALSLRHSIKAESLRKRLIFGFVLTDELFAISSTQ 129
+ + + L +I I +FL +H +Y+ + +K LR I F LTDE+FA+S
Sbjct 62 ITLYSQSLLSAIFIPIFL-NLRHIIYSSIIAQKLK---LRFPHISAFGLTDEVFAVSVNS 117
Query 130 SHYQYRVLLGAGLWFYICWLLFSYLGVMLTSS--FDNLHQLHLDFSIVATFIAIIIPLVK 187
+ + R LLG L Y W+ + LGV+ S+ D L FSI A F+ +++P +K
Sbjct 118 AENE-RFLLGLELGSYSAWVGGTALGVLAGSTLILDRDVYSALVFSISALFLVLLLPNLK 176
Query 188 NRHVLLGVSITILLTTLFLYLDILMGGLLAALIGMTFASW 227
RHV VS + L +G + AAL G + W
Sbjct 177 GRHVRAAVSGGAVALAFHLLNLTSVGIIAAALAGPLLSGW 216
>O25889 Uncharacterized membrane protein HP_1331 [Helicobacter
pylori (strain ATCC 700392 / 26695)]
Length=228
Score = 65.9 bits (159), Expect = 4e-17
Identities = 51/201 (25%), Positives = 94/201 (47%), Gaps = 10/201 (5%)
Query 13 YLRDFLTGAIKITPLCLAVLPWGLLAGSMAIQAGLSPLQAIGMSAFVFAGAAQLVSLGMI 72
+L+ F + L L G+ G + +Q G A+ MS F++AGA Q V++ ++
Sbjct 4 FLKAFKDAFPHTISILLGYLLMGMTFGMLLVQQGYDYKVALFMSLFIYAGAVQFVAITLL 63
Query 73 MAGAPLVSIVISVFLITSQHYLYALSLRHSIKAESLRKRLIFGFVLTDELFAI----SST 128
A A L+++VI L+ ++ YALS+ K R + LTDE FA+ +
Sbjct 64 SAQASLMNVVIVSLLVNARQTCYALSMLDRFKNTKWRLPYL-AHALTDETFALLNLYAPK 122
Query 129 QSHYQYRVLLGAGLWFYICWLLFSYLGVMLTSSFDNLHQLHLDFSIVATFIAIIIPLVK- 187
+ + + L + W+ S +G ++ S F + ++F + A FI + + K
Sbjct 123 EGVSEKDFIFSISLLNHSYWIFGSLVGSLVGSHF-SFDTQGMEFVMTAIFIVLFMEQYKR 181
Query 188 ---NRHVLLGVSITILLTTLF 205
+++ LG+ I ++ LF
Sbjct 182 TTNHKNAWLGIVIAVVCLALF 202
Score = 16.9 bits (32), Expect = 1.3
Identities = 9/17 (53%), Positives = 12/17 (71%), Gaps = 3/17 (18%)
Query 208 LDILMGGLLAALIGMTF 224
+ IL+G LL +GMTF
Sbjct 16 ISILLGYLL---MGMTF 29
>P76630 Inner membrane protein YgaZ [Escherichia coli (strain
K12)]
Length=245
Score = 65.5 bits (158), Expect = 7e-17
Identities = 52/224 (23%), Positives = 100/224 (45%), Gaps = 13/224 (6%)
Query 17 FLTGAIKITPLCLAVLPWGLLAGSMAIQAGLSPLQAIGMSAFVFAGAAQLVSLGMIMAGA 76
F+ G P+ ++ +P G A + G SPL+++ S ++AGA+Q V M+ AG+
Sbjct 15 FMEGCKDSLPIVISYIPVAFAFGLNATRLGFSPLESVFFSCIIYAGASQFVITAMLAAGS 74
Query 77 PLVSIVISVFLITSQHYLYALSLR-HSIKAESLRKRLIFGFVLTDELFAISSTQ-----S 130
L ++V + +H LY SLR I+ K ++ F LTDE+FA ++ +
Sbjct 75 SLWIAALTVMAMDVRHVLYGPSLRSRIIQRLQKSKTALWAFGLTDEVFAAATAKLVRNNR 134
Query 131 HYQYRVLLGAGLWFYICWLLFSYLGVMLTSSFDNLH---QLHLDFSIVATFIAIIIPLVK 187
+ ++G + W+ + +G S + + L F + A F++ ++ +
Sbjct 135 RWSENWMIGIAFSSWSSWVFGTVIGAFSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQ 194
Query 188 NRHVLLGVSITI----LLTTLFLYLDILMGGLLAALIGMTFASW 227
+ L + + +T + + IL G + L + A W
Sbjct 195 RKQSLCVTAALVGALAGVTLFSIPVAILAGIVCGCLTALIQAFW 238
Score = 20.4 bits (41), Expect = 0.099
Identities = 6/12 (50%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
Query 219 LIGMTFASWSEY 230
+IG+ F+SWS +
Sbjct 141 MIGIAFSSWSSW 152
>Q9ZJQ3 Uncharacterized membrane protein jhp_1251 [Helicobacter
pylori (strain J99 / ATCC 700824)]
Length=228
Score = 64.3 bits (155), Expect = 1e-16
Identities = 51/201 (25%), Positives = 94/201 (47%), Gaps = 10/201 (5%)
Query 13 YLRDFLTGAIKITPLCLAVLPWGLLAGSMAIQAGLSPLQAIGMSAFVFAGAAQLVSLGMI 72
+L+ F + L L G+ G + Q G A+ MS F++AGA Q V++ ++
Sbjct 4 FLKAFKDAFPHTISIFLGYLLMGMTFGMLLAQQGYDYKVALFMSLFIYAGAIQFVAITLL 63
Query 73 MAGAPLVSIVISVFLITSQHYLYALSLRHSIKAESLRKRLIFGFVLTDELFAI----SST 128
A A L+++VI L+ ++ YALS+ K R + LTDE FA+ +
Sbjct 64 SAQASLMNVVIVSLLVNARQTCYALSMLDRFKNTKWRLPYL-AHALTDETFALLNLYAPK 122
Query 129 QSHYQYRVLLGAGLWFYICWLLFSYLGVMLTSSFDNLHQLHLDFSIVATFIAIIIPLVK- 187
+ + + L + W+ S +G ++ S F + ++F + A FI + + K
Sbjct 123 KGVNETDFMFSISLLNHSYWIFGSLVGSLVGSHF-SFDTQGMEFVMTAIFIVLFMEQYKR 181
Query 188 ---NRHVLLGVSITILLTTLF 205
+++ LG++I ++ LF
Sbjct 182 NTNHKNAWLGIAIAVVCLALF 202
Score = 15.4 bits (28), Expect = 4.0
Identities = 8/17 (47%), Positives = 11/17 (65%), Gaps = 3/17 (18%)
Query 208 LDILMGGLLAALIGMTF 224
+ I +G LL +GMTF
Sbjct 16 ISIFLGYLL---MGMTF 29
Lambda K H a alpha
0.333 0.143 0.431 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 160776
Database: b973bf49bc12e7a1ae10c0bca7716de3.SwissProt.fasta
Posted date: May 9, 2024 7:47 PM
Number of letters in database: 920
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
