BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 18bf56e1ba6a877e38a202b94135391b.SwissProt.fasta
14 sequences; 4,134 total letters
Query= ACIAD2084
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
O31449 Uncharacterized HTH-type transcriptional regulator YbfI [B... 107 3e-31
Q51872 Probable transcriptional regulator LumQ [Photobacterium le... 63.9 2e-15
P45008 Uncharacterized HTH-type transcriptional regulator HI_1052... 63.2 6e-15
Q9HTI4 HTH-type transcriptional regulator GbdR [Pseudomonas aerug... 58.2 4e-13
A0A0H2ZIC3 HTH-type transcriptional regulator GbdR [Pseudomonas a... 58.2 4e-13
Q9WW32 HTH-type transcriptional regulator MtrA [Neisseria gonorrh... 56.6 1e-12
P06134 Methylphosphotriester-DNA--protein-cysteine S-methyltransf... 54.7 5e-12
Q65Q31 HTH-type transcriptional activator RhaS [Mannheimia succin... 53.5 9e-12
P26189 Regulatory protein ada [Salmonella typhimurium (strain LT2... 53.5 1e-11
O33813 Lactose operon transcription activator [Staphylococcus xyl... 51.2 6e-11
Q52620 Regulatory protein PqrA [Proteus vulgaris] 48.5 8e-11
G3XCU2 HTH-type transcriptional regulator ArgR [Pseudomonas aerug... 50.4 1e-10
P0A9E0 Arabinose operon regulatory protein [Escherichia coli (str... 50.1 1e-10
P11765 Arabinose operon regulatory protein [Citrobacter freundii] 48.5 4e-10
>O31449 Uncharacterized HTH-type transcriptional regulator YbfI
[Bacillus subtilis (strain 168)]
Length=275
Score = 107 bits (268), Expect = 3e-31
Identities = 67/247 (27%), Positives = 124/247 (50%), Gaps = 8/247 (3%)
Query 32 HSHPTFSIGAVDSGKSYFSSYLHTNMEISAGTVVSIPAYLEHSCNPLPNQTWSYQMMHLE 91
H H + IG ++ G+ Y + + I+ G ++ HSC + +T Y+
Sbjct 31 HFHDYYVIGFIEKGQRYLACQDQEYI-INPGDLLLFNPRDTHSCEQIDGRTLDYRC---- 85
Query 92 LNWVKQFFEETVAESFGS-QIPELKPEIIHHPKIYQHFSHLNTMLFDSERTILEKEQLLI 150
+N + E+ V E GS +P ++ ++ L+ +L E+ L KE+L +
Sbjct 86 INVMPDIMEKAVKEITGSGHLPYFSQHVLFRHELTASLQELH-ILISEEKQALRKEELFL 144
Query 151 ETLNQIIFPSLQLKYLNDKKNSTNLLSKLLEILLQH-DDFISLEQLSRYGGISRYAIIRL 209
L ++I + +L+ ++ + + E L +H + ++L LS G S+Y ++R
Sbjct 145 HLLEELIRHYSDVTFLSSVPEPSDEVKMVCEFLEEHYAENVTLNDLSELTGWSKYHLLRS 204
Query 210 FKKNFGLTPHAFQLNMRVNQARELLKKGKAIIHIAYDLGFVDQSHFYRVFKSLTGISPKD 269
F K G+TP+++ +R+NQA++LL++G I A+ GF DQSH + FK G++PK
Sbjct 205 FTKQKGITPNSYMETIRINQAKKLLEQGVRPIDAAFQTGFSDQSHMTKFFKRQVGLTPKQ 264
Query 270 YQQHFSR 276
Y + F +
Sbjct 265 YMKIFEK 271
>Q51872 Probable transcriptional regulator LumQ [Photobacterium
leiognathi]
Length=248
Score = 63.9 bits (154), Expect = 2e-15
Identities = 70/246 (28%), Positives = 112/246 (46%), Gaps = 23/246 (9%)
Query 29 YKAHSHPTFSIGAVDSGKSYFSSYLHTNMEISAGTVVSIPAYLEHSCNPLPNQTWSYQMM 88
Y H +P +G + GKS S +++ +S G I A +EHS + N Q++
Sbjct 19 YHHHEYPQIILGLM--GKSELSIE-DSSVCLSPGMGYRINANVEHSFSGTSNN----QVL 71
Query 89 HLELNWVKQFFEETVAESFGSQIPELKPEIIHHPKIYQHFSHLNTMLFDSERTILEKEQL 148
+ L F T E FG+ L + +Q S L T L + L Q
Sbjct 72 VMNL---PPFISMTDVEQFGNSYFSLDA------RTHQLISLLATELKEHADDSL-LSQS 121
Query 149 LIETLNQIIFPSLQLKYLNDKKNSTNLLSKLLEILLQH--DDFISLEQLSRYGGISRYAI 206
+ TL +I SL L D+K L L++ ++ IS+ +LS +++
Sbjct 122 ISNTLQCLIKRSLMLF---DEKKVERLNMVLIDNYIEQHLQKKISVAELSSVAFLAQSQF 178
Query 207 IRLFKKNFGLTPHAFQLNMRVNQARELL-KKGKAIIHIAYDLGFVDQSHFYRVFKSLTGI 265
LFK G+TPH + L R++ A++L+ ++ K + +A GF QS F + F+ L G+
Sbjct 179 YALFKSQMGITPHQYVLRKRLDLAKQLIAERQKPLSQVAQLCGFSSQSSFSQAFRRLYGM 238
Query 266 SPKDYQ 271
SP YQ
Sbjct 239 SPTRYQ 244
>P45008 Uncharacterized HTH-type transcriptional regulator HI_1052
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=298
Score = 63.2 bits (152), Expect = 6e-15
Identities = 36/111 (32%), Positives = 67/111 (60%), Gaps = 5/111 (5%)
Query 166 LNDKKNSTNLLSKLLEILLQHDDFISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNM 225
L DK+ +T L++ IL Q + +EQL+ +SR IR+F+++ G++P F +
Sbjct 191 LQDKRLNTALIA----ILQQPQNDWHIEQLAELATMSRANFIRIFQQHIGMSPGRFLTKV 246
Query 226 RVNQARELLKKG-KAIIHIAYDLGFVDQSHFYRVFKSLTGISPKDYQQHFS 275
R+ A LLK+ ++++ IA ++G+ ++HF +VFK+ +SP Y++ S
Sbjct 247 RLQSAAFLLKQSQQSVLAIALEVGYQSEAHFCKVFKNYYQLSPSQYRKSVS 297
>Q9HTI4 HTH-type transcriptional regulator GbdR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=367
Score = 58.2 bits (139), Expect = 4e-13
Identities = 31/84 (37%), Positives = 51/84 (61%), Gaps = 1/84 (1%)
Query 190 ISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQARELLKK-GKAIIHIAYDLG 248
I L++L+ Y +SR + RLF+K +P + L +R+ +AR+LLK+ +II +A G
Sbjct 241 IDLDELAVYVNVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTSMSIIEVASVCG 300
Query 249 FVDQSHFYRVFKSLTGISPKDYQQ 272
FV HF + ++ GI P+D +Q
Sbjct 301 FVSTPHFSKCYREYFGIPPRDERQ 324
>A0A0H2ZIC3 HTH-type transcriptional regulator GbdR [Pseudomonas
aeruginosa (strain UCBPP-PA14)]
Length=367
Score = 58.2 bits (139), Expect = 4e-13
Identities = 31/84 (37%), Positives = 51/84 (61%), Gaps = 1/84 (1%)
Query 190 ISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQARELLKK-GKAIIHIAYDLG 248
I L++L+ Y +SR + RLF+K +P + L +R+ +AR+LLK+ +II +A G
Sbjct 241 IDLDELAVYVNVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQTSMSIIEVASVCG 300
Query 249 FVDQSHFYRVFKSLTGISPKDYQQ 272
FV HF + ++ GI P+D +Q
Sbjct 301 FVSTPHFSKCYREYFGIPPRDERQ 324
>Q9WW32 HTH-type transcriptional regulator MtrA [Neisseria gonorrhoeae]
Length=301
Score = 56.6 bits (135), Expect = 1e-12
Identities = 33/111 (30%), Positives = 65/111 (59%), Gaps = 5/111 (5%)
Query 163 LKYLNDKKNSTNLLSKLLEILLQHDDFISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQ 222
LK DK+ +L+ K+++ + +D +++++ +SR ++R FK GL+PHAF
Sbjct 190 LKGWQDKRLG-HLIQKVID---KPEDEWNIDKMVAAANMSRAQLMRRFKSQVGLSPHAFV 245
Query 223 LNMRVNQARELLKK-GKAIIHIAYDLGFVDQSHFYRVFKSLTGISPKDYQQ 272
++R+ + LLKK +++ +A +GF ++HF + FK +SP Y++
Sbjct 246 NHIRLQKGALLLKKTPDSVLEVALSVGFQSETHFGKAFKRQYHVSPGQYRK 296
Score = 20.8 bits (42), Expect = 0.44
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 250 VDQSHFYRVFKSLTGISPKDYQQH 273
+ ++ R FKS G+SP + H
Sbjct 224 MSRAQLMRRFKSQVGLSPHAFVNH 247
>P06134 Methylphosphotriester-DNA--protein-cysteine S-methyltransferase
/ Methylated-DNA--protein-cysteine methyltransferase
[Escherichia coli (strain K12)]
Length=354
Score = 54.7 bits (130), Expect = 5e-12
Identities = 29/89 (33%), Positives = 49/89 (55%), Gaps = 0/89 (0%)
Query 183 LLQHDDFISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQARELLKKGKAIIH 242
LL+ + ++LE L+ +S + + RLFK G+TP A+Q R + RE L KG+++
Sbjct 93 LLEQETPVTLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTT 152
Query 243 IAYDLGFVDQSHFYRVFKSLTGISPKDYQ 271
+ GF D S +YR G++ K ++
Sbjct 153 SILNAGFPDSSSYYRKADETLGMTAKQFR 181
Score = 29.3 bits (64), Expect = 0.001
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 254 HFYRVFKSLTGISPKDYQQHFSRNFIQE 281
H +R+FK+ TG++PK +QQ + ++E
Sbjct 115 HLHRLFKATTGMTPKAWQQAWRARRLRE 142
>Q65Q31 HTH-type transcriptional activator RhaS [Mannheimia succiniciproducens
(strain MBEL55E)]
Length=268
Score = 53.5 bits (127), Expect = 9e-12
Identities = 65/270 (24%), Positives = 102/270 (38%), Gaps = 14/270 (5%)
Query 4 LSNQFWTDPRMPYVETRRACMSRICYKAHSHPTFSIGAVDSGKSYFSSYLHTNMEISAGT 63
L+ F+ + P + RA H I SG+ + Y H ++ G
Sbjct 6 LARDFFNNKEQPIILEPRAPQEIFPEHTHDFDELVIVKHGSGRHILNGYPH---DLYPGV 62
Query 64 VVSIPAYLEHSCNPLPNQTWSYQMMHLELNWVKQFFEETVAESFGSQIPELKPEIIHHPK 123
V+ I A HS L + + ++ N+ + + LKPE +
Sbjct 63 VLYIQAQDHHSYENLQDLCLTNILIQSNNNF-------KYLNNIDILLNGLKPENSSYQL 115
Query 124 IYQHFSHLNTMLFDSERTILEKEQLLIETLNQIIFPSLQLKYLNDKKNSTNLLSKLLEIL 183
I + + L + I E L E L + S+Q ND I
Sbjct 116 INKKTAEYIDSLLEKINAIDESYNLQNECLFFQVLSSIQAHQFNDSGYGNTEEKGRQMIR 175
Query 184 LQHDDF---ISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQARELLK-KGKA 239
++F I E+L+ + + R K G TP + +R+ QA LK K
Sbjct 176 WLENNFEKEIDWEELAEKFALPIRTLHRYIKSQTGHTPQNYVTKLRLAQAYYQLKYTEKN 235
Query 240 IIHIAYDLGFVDQSHFYRVFKSLTGISPKD 269
II+IAYD GF D S+F FK+ I+P++
Sbjct 236 IINIAYDCGFNDSSYFSTCFKNEYSIAPRE 265
>P26189 Regulatory protein ada [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=353
Score = 53.5 bits (127), Expect = 1e-11
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 0/90 (0%)
Query 183 LLQHDDFISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQARELLKKGKAIIH 242
LL+ + ++L L++ +S + + RLFK + G+TP +Q R + RE L KG+ I
Sbjct 93 LLEQETPVTLAFLAQAVAMSPFHLHRLFKASTGMTPKGWQQAWRARRLREALAKGEPITA 152
Query 243 IAYDLGFVDQSHFYRVFKSLTGISPKDYQQ 272
Y GF D S +YR G++ K +++
Sbjct 153 AIYRAGFPDSSSYYRHADQTLGMTAKQFRK 182
Score = 29.3 bits (64), Expect = 0.001
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 0/28 (0%)
Query 254 HFYRVFKSLTGISPKDYQQHFSRNFIQE 281
H +R+FK+ TG++PK +QQ + ++E
Sbjct 115 HLHRLFKASTGMTPKGWQQAWRARRLRE 142
>O33813 Lactose operon transcription activator [Staphylococcus
xylosus]
Length=279
Score = 51.2 bits (121), Expect = 6e-11
Identities = 53/246 (22%), Positives = 109/246 (44%), Gaps = 23/246 (9%)
Query 42 VDSGKSYFSSYLHTNMEISAGTVVSIPAYLEHSCNPLPNQTWSYQMMHLELNWVKQFFEE 101
V G+ FS Y ++AG + + +E P + W+Y + + + +
Sbjct 44 VTQGEGTFS-YAGETYHLTAGDIFLLERGMEVEYKPSFSNPWTYYWVGMNGKQILNYLSR 102
Query 102 -TVAES---FGSQIPELKPEIIHHPKIYQHFSHLNTMLFDSERTILEKEQLLIETLNQII 157
++ +S G ++K I K+ Q N+ + L+++ L Q++
Sbjct 103 CSIVDSHVILGQDTTDIKNIIQLICKLSQSIESNNS-----------NDILIMQYLYQLV 151
Query 158 FPSLQLKYLNDKKNSTNLLSKLLE-----ILLQHDDFISLEQLSRYGGISRYAIIRLFKK 212
+ +LQ K+ +++++ ++ I + I++E +++ I+R + +LFKK
Sbjct 152 Y-TLQEKFPKIFSVQVDIVNEDIQHAVDFINTNYQKHITVEDVAKSVNITRSHLYKLFKK 210
Query 213 NFGLTPHAFQLNMRVNQARELLKKGKAII-HIAYDLGFVDQSHFYRVFKSLTGISPKDYQ 271
N G +P + +R+ A +LL +I I+ +G+ D F + F IS +Y+
Sbjct 211 NLGCSPKEYLTYIRMYHASQLLIHTSTLISDISRQVGYKDPLLFSKNFTKHFEISASEYR 270
Query 272 QHFSRN 277
HFS N
Sbjct 271 HHFSIN 276
>Q52620 Regulatory protein PqrA [Proteus vulgaris]
Length=122
Score = 48.5 bits (114), Expect = 8e-11
Identities = 30/105 (29%), Positives = 56/105 (53%), Gaps = 1/105 (1%)
Query 170 KNSTNLLSKLLEILLQHDDFISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQ 229
+N N + K LE LQ ++ I ++ ++ G S++ + R+FK G T + R+ +
Sbjct 3 ENVVNDILKWLETQLQRNEGIKIDTIANKSGYSKWHLQRIFKDFKGCTLGEYVRKRRLLE 62
Query 230 A-RELLKKGKAIIHIAYDLGFVDQSHFYRVFKSLTGISPKDYQQH 273
A + L +K +I+ IA GF Q+ F R+FK +P ++++
Sbjct 63 AAKSLQEKDMSILDIALMYGFSSQATFTRIFKKHFNTTPAKFREN 107
>G3XCU2 HTH-type transcriptional regulator ArgR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=329
Score = 50.4 bits (119), Expect = 1e-10
Identities = 22/81 (27%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query 190 ISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQARE-LLKKGKAIIHIAYDLG 248
++ ++++++ +SR + R+FK+ P + L +R+N+AR+ L++ K+II I G
Sbjct 228 LTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNRARQMLMQTSKSIIQIGLSCG 287
Query 249 FVDQSHFYRVFKSLTGISPKD 269
F HF +++ G++P++
Sbjct 288 FSSGPHFSSAYRNFFGVTPRE 308
>P0A9E0 Arabinose operon regulatory protein [Escherichia coli
(strain K12)]
Length=292
Score = 50.1 bits (118), Expect = 1e-10
Identities = 38/161 (24%), Positives = 80/161 (50%), Gaps = 8/161 (5%)
Query 115 KPEIIHHPKIYQHFSHLNTMLFDSERTILEKEQLL-IETLNQIIFPSLQLKYLNDKKNST 173
+P+ H P HFS L + ++ + +LL I L Q++ ++ +
Sbjct 121 RPDEAHQP----HFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMD 176
Query 174 NLLSKLLEILLQH--DDFISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQAR 231
N + + + + H D + ++++ +S + LF++ G++ +++ + R++QA+
Sbjct 177 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAK 236
Query 232 ELLKKGKA-IIHIAYDLGFVDQSHFYRVFKSLTGISPKDYQ 271
LL + I + ++GF DQ +F RVFK TG SP +++
Sbjct 237 LLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR 277
>P11765 Arabinose operon regulatory protein [Citrobacter freundii]
Length=281
Score = 48.5 bits (114), Expect = 4e-10
Identities = 37/161 (23%), Positives = 79/161 (49%), Gaps = 8/161 (5%)
Query 115 KPEIIHHPKIYQHFSHLNTMLFDSERTILEKEQLL-IETLNQIIFPSLQLKYLNDKKNST 173
+P+ H P HF+ L + ++ + +LL I L Q++ ++ +
Sbjct 121 RPDEAHQP----HFNELFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMD 176
Query 174 NLLSKLLEILLQH--DDFISLEQLSRYGGISRYAIIRLFKKNFGLTPHAFQLNMRVNQAR 231
N + + + H D + ++++ +S + LF++ G++ +++ + R++QA+
Sbjct 177 NRVRDACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAK 236
Query 232 ELLKKGKA-IIHIAYDLGFVDQSHFYRVFKSLTGISPKDYQ 271
LL + I + ++GF DQ +F RVFK TG SP +++
Sbjct 237 LLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR 277
Lambda K H a alpha
0.325 0.137 0.415 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 837284
Database: 18bf56e1ba6a877e38a202b94135391b.SwissProt.fasta
Posted date: May 19, 2024 10:33 PM
Number of letters in database: 4,134
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
