BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1948411a7be46f89000c1e659c0c5ff8.SwissProt.fasta
17 sequences; 20,265 total letters
Query= ACIAD2089
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
Q9HXZ1 DNA polymerase III subunit alpha [Pseudomonas aeruginosa (... 1133 0.0
Q9XDH6 DNA polymerase III subunit alpha [Pseudomonas fluorescens] 1111 0.0
P52022 DNA polymerase III subunit alpha [Vibrio cholerae serotype... 1063 0.0
P14567 DNA polymerase III subunit alpha [Salmonella typhimurium (... 1061 0.0
Q9CPK3 DNA polymerase III subunit alpha [Pasteurella multocida (s... 1057 0.0
Q8FL05 DNA polymerase III subunit alpha [Escherichia coli O6:H1 (... 1051 0.0
Q8X8X5 DNA polymerase III subunit alpha [Escherichia coli O157:H7] 1050 0.0
P10443 DNA polymerase III subunit alpha [Escherichia coli (strain... 1050 0.0
P43743 DNA polymerase III subunit alpha [Haemophilus influenzae (... 1039 0.0
Q87EY0 DNA polymerase III subunit alpha [Xylella fastidiosa (stra... 998 0.0
Q9PGU4 DNA polymerase III subunit alpha [Xylella fastidiosa (stra... 997 0.0
B8GWS6 DNA polymerase III subunit alpha [Caulobacter vibrioides (... 725 0.0
Q9XDH5 DNA polymerase III subunit alpha [Thermus aquaticus] 689 0.0
Q9Z618 DNA polymerase III subunit alpha [Streptomyces coelicolor ... 583 0.0
P9WNT7 DNA polymerase III subunit alpha [Mycobacterium tuberculos... 575 0.0
Q9RX08 DNA polymerase III subunit alpha [Deinococcus radiodurans ... 566 0.0
P74750 DNA polymerase III subunit alpha [Synechocystis sp. (strai... 514 1e-163
>Q9HXZ1 DNA polymerase III subunit alpha [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 /
LMG 12228 / 1C / PRS 101 / PAO1)]
Length=1173
Score = 1133 bits (2930), Expect = 0.0
Identities = 611/1189 (51%), Positives = 804/1189 (68%), Gaps = 61/1189 (5%)
Query 1 MQFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIK 60
+ FVHL +HTEFS+ + +VR+ L KA MPA+A+TD SN+ + VKFY + + GIK
Sbjct 3 VSFVHLRLHTEFSLVDGLVRVKPLAKAVAGLGMPAVAVTDQSNMCSLVKFYKTAMGAGIK 62
Query 61 PILGSVVRL-----NDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILE 115
PI G+ + L + P R++LLAM G++ LTE++SRG EGQ+ ++++W+ E
Sbjct 63 PICGADIWLASREEDGPLSRLSLLAMNAKGYRNLTELISRGWSEGQRNGEIIIERDWVKE 122
Query 116 QHQDIIVL-LGQHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMV 174
+ +I L + ++G L KAE LL+ W E F R Y+ + RT R +E+++
Sbjct 123 AAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVFPERFYVEVQRTSRVNDEEHLH 182
Query 175 EAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTA 234
AV LA++ N +VA NDV FI+++DF+AHE RVCI +G L D RRPR YS +QY K+
Sbjct 183 AAVALASRCNAPLVATNDVRFIKQEDFEAHETRVCIGEGRTLDDPRRPRTYSDQQYLKSP 242
Query 235 SEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEE 294
+EM ELFSD+P A+ENT IA+RCN+ +QLG YFLPD+P P+G ID Y H S EGLEE
Sbjct 243 AEMAELFSDLPEALENTVEIAKRCNIEVQLGKYFLPDFPTPNGMGIDDYLRHASFEGLEE 302
Query 295 RLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVG 354
RL L P +T D+ R+ Y +R+ +E+ II++MGFPGYFLIVMDFI+WAK+NGVPVG
Sbjct 303 RLEVLLPKDT--PDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPVG 360
Query 355 PGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVS 414
PGRGSGAGSLVAY LKITDLDPL YDLLFERFLNPER+SMPDFDVDFC+ GRDRVIDYV+
Sbjct 361 PGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERISMPDFDVDFCMEGRDRVIDYVA 420
Query 415 RTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEME 474
YGR AVSQI TFGTMAAK +RDVARV GKSYGLADR+SKM+P + +G+ L +A E E
Sbjct 421 DAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFE-VGMTLDKAYEQE 479
Query 475 PQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDAD 534
L+D + + +++AAEIWEMALKLEGITR TGKHAGGVVIAP K+TD+S + CD +
Sbjct 480 EMLRDFLKS-----DEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPIACDEE 534
Query 535 GTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSE--IPLDIANVPLDD 592
G V Q+DKDDVEAAGLVKFDFLGLR LT+I+ A++ IN+ + P++I +PLDD
Sbjct 535 GGGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMEIINREQAKKGLEPVNIDFIPLDD 594
Query 593 KDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIH 650
K Y + A TTAVFQ ES GMK+++K+ +P E++IA V+L+RPGP+ ++ DFI+
Sbjct 595 KPTYSLLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFIN 654
Query 651 RMHG-GEFEYLHPL-----LESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704
R HG E Y HP LE VL+PTYGI++YQEQVMQ AQ AGYTLGGAD+LRRAMG
Sbjct 655 RKHGRAELSYPHPDYQYAGLEPVLKPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMG 714
Query 705 KKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764
KKKPEEM KQR FI+G ID A +IFD +EKFAGYGFNKSH+AAY LV+Y TAW
Sbjct 715 KKKPEEMAKQRGGFIEGCKNNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAW 774
Query 765 LKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVY 824
LK H+PA FMAAVL+++MQNTD +V LI++CR+ L ++ P VN S + F D+ IVY
Sbjct 775 LKTHFPAPFMAAVLTADMQNTDKVVTLIEECRHMKLRIVAPDVNNSEFRFTVDDDGRIVY 834
Query 825 GLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCL-- 882
GLGAIKGVGE ++++ + R + GP+ LFDFC R+DLK+INKRTLEALIRAGALD L
Sbjct 835 GLGAIKGVGEGPVEAITECRAEGGPFNTLFDFCDRVDLKRINKRTLEALIRAGALDRLGP 894
Query 883 -------------QIERSSLMAQLPEAVQAAEQARQNRETGIMDLFG----EVEEVQRKP 925
+ R+ L+A + EA+QAAEQ ++ ++G MDLFG E E
Sbjct 895 HYHDELKAYQATVDLNRAVLLAAMEEAIQAAEQTARSHDSGHMDLFGGVFAEPEADVYAN 954
Query 926 AKPVKPWSDEVRLKGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAG 985
+ VK + + RLKGEKDTLGLYLTGHPID Y E++ F ++ E+ P R T AG
Sbjct 955 HRKVKELTLKERLKGEKDTLGLYLTGHPIDEYEGEVRRFARQRIVELKPARD--TQTVAG 1012
Query 986 LVLDVANFPNRM-----VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYERE 1040
L++++ N+ +TLDD + RIE S E F + ++ + +VV+EGE+ + +
Sbjct 1013 LIVNLRVMKNKKGDKMGFVTLDDRSGRIEASLFSEAFAAAQSLLQTDALVVVEGEVSQDD 1072
Query 1041 GFDRPMARLSKAFSLNEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQH-- 1098
R + SL E R A +R+ K A L+ L + +H
Sbjct 1073 FSGGLRLRAKRVMSLEEARTGLAESLRM--------KLHADLLKGDRLRWLGELFNRHRG 1124
Query 1099 -IPVMLTLEQPYATAEVHLGQNWKVAPLDELLIKLRDYFGKDAIYIEYQ 1146
P+ L A A + G++W+V P D+L+ LRD FG+D +++ Y+
Sbjct 1125 SCPITLDYTSADAKALLQFGESWRVDPADDLIQALRDQFGRDNVFLNYR 1173
>Q9XDH6 DNA polymerase III subunit alpha [Pseudomonas fluorescens]
Length=1173
Score = 1111 bits (2873), Expect = 0.0
Identities = 601/1191 (50%), Positives = 802/1191 (67%), Gaps = 69/1191 (6%)
Query 3 FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62
FVHL +HTE+S+ + +VRI L+KA MPA+A+TD +N+ + VKFY + + GIKPI
Sbjct 5 FVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
Query 63 LGSVVRLND-----PEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQH 117
G+ + L++ P RI+LL M G++ LTE++SRG I+GQ+ + +++EW+ E +
Sbjct 65 CGADLWLSNKDPDGPLSRISLLVMNAQGYRNLTELISRGFIDGQRNGMVIIEREWVAEAN 124
Query 118 QDIIVL-LGQHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVEA 176
+ +I+L + ++G + NP +AE L + W F +R Y+ + RT R +E+ + A
Sbjct 125 EGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRTNRPNDEEQLHGA 184
Query 177 VKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTASE 236
V LA K +VA NDV FI+++DF AHE RVCI +G L D RR + YS +QY K+A E
Sbjct 185 VALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQQYLKSAEE 244
Query 237 MEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEERL 296
M ELFSD+P AIENT IA+RCN+ ++LG +FLPDYPIPDG TID YF +S +GLEERL
Sbjct 245 MAELFSDLPDAIENTVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEYFRKVSFDGLEERL 304
Query 297 NHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGPG 356
+ L P +T + D+ R+ Y +R+ +E+ II++MGFPGYFLIVMDFIQWAK+NGVPVGPG
Sbjct 305 SVLLPKDTTE-DYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPG 363
Query 357 RGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRT 416
RGSGAGSLVAY KITDLDPL YDLLFERFLNPERVSMPDFDVDFC+ GRDRVIDYV+
Sbjct 364 RGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYVAEK 423
Query 417 YGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEMEPQ 476
YGR AVSQI TFG+MAAK +RDVAR GKS+GLADR+SKMVP + +G+ L++A E E
Sbjct 424 YGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMVPFE-VGMTLEKAYEQEEI 482
Query 477 LKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADGT 536
L+D + +++AAEIWEMA KLEG+ RN GKHAGGVVIAP K+TD+S + CD G
Sbjct 483 LRDFI-----KVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEAGD 537
Query 537 NRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNIN--KRIQSEIPLDIANVPLDDKD 594
V Q+DKDDVEAAGLVKFDFLGLR LT+I+ A++ IN + +E PLDIA +PLDDK
Sbjct 538 GLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIAFIPLDDKP 597
Query 595 AYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHRM 652
Y + A TTAVFQ ES GMK+++K+ + E++IA V+L+RPGP+ ++ DFI+R
Sbjct 598 TYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRPGPLQSGMVDDFINRK 657
Query 653 HG-GEFEYLHP-----LLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKK 706
HG E Y HP L+ VL PTYGI++YQEQVMQ AQ AGYTLGGAD+LRRAMGKK
Sbjct 658 HGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKK 717
Query 707 KPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLK 766
KPEEM KQR FI+G A ID A +IFD +EKFAGYGFNKSH+AAY LV+Y TAWLK
Sbjct 718 KPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLK 777
Query 767 AHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYGL 826
AHYPA FMAAVLS++M NTD +V LI++ R L + P VN S + F +DE IVYGL
Sbjct 778 AHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVNDEGRIVYGL 837
Query 827 GAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCL---- 882
GAIKGVGE ++++ ++R + GP+ DLFDFC R+DLK+INKRTL+ LIR+GALD L
Sbjct 838 GAIKGVGEGPVEAITEAR-QAGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYF 896
Query 883 -----------QIERSSLMAQLPEAVQAAEQARQNRETGIMDLFG--------EVEEVQR 923
R+ L+A + EA+++AEQ + R++G DLFG +V + R
Sbjct 897 HDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFGGLFVEEDADVYAIHR 956
Query 924 KPAKPVKPWSDEVRLKGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVF 983
K K + + RLKGEKDTLGLYLTGHPID Y E++ F ++ ++ P R T
Sbjct 957 K----AKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARD--TQTV 1010
Query 984 AGLVLDVANFPNRM-----VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYE 1038
AG+++ + N+ ITLDD + RIE S + F + ++ + +VV+EGE+
Sbjct 1011 AGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSN 1070
Query 1039 REGFDRPMARLSKAFSLNEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQH 1098
+ R+ + S+ + R A +R+ K DL+ L + + +H
Sbjct 1071 DDFSGGLRLRVKRVMSMEDARTNLAESLRL--------KLQTQDLKGDQLRWLGDLLKRH 1122
Query 1099 ---IPVMLTLEQPYATAEVHLGQNWKVAPLDELLIKLRDYFGKDAIYIEYQ 1146
P+ + P A + G+ W++ P D L+ LRD FG+D ++++Y+
Sbjct 1123 RGACPITMEYTSPDAKTLLQFGETWRIDPADALIQALRDQFGRDNVFLQYR 1173
>P52022 DNA polymerase III subunit alpha [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=1159
Score = 1063 bits (2749), Expect = 0.0
Identities = 565/1170 (48%), Positives = 779/1170 (67%), Gaps = 42/1170 (4%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61
+F+HL IH++FS+ + + ++P L+K MPA+ALTD +NL VKFY++ G+KP
Sbjct 5 KFIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKP 64
Query 62 ILGSVVRLNDPEH-----RITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116
I+G+ L E ++TLLA N G+K LT ++S+ ++ G P + K W++E
Sbjct 65 IIGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEH 124
Query 117 HQDIIVLLGQHS-DVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175
+ +IVL G S +VG+ L N Q+ E ++ +Q F + Y+ L RT RA EE Y+
Sbjct 125 AEGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF 184
Query 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235
A+ +A +Y++ VVA N+V FI + F+AHE RV I DGY L D RRP+ YS +QY ++ +
Sbjct 185 ALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEA 244
Query 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295
EM ELF+DIP A+ N+ IA+RCNV+++LG YFLP++P G I+ + S+EGLEER
Sbjct 245 EMCELFADIPEALANSVEIAKRCNVTVRLGEYFLPNFPT-GGMAIEDFLVMKSREGLEER 303
Query 296 LNHLYPI-ETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVG 354
L L+P E R + PE YDER++ E+ +I +MGFPGYFLIVM+FIQW+K N +PVG
Sbjct 304 LEFLFPDPEVRAKRRPE----YDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 359
Query 355 PGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVS 414
PGRGSGAGSLVAY+LKITDLDPL YDLLFERFLNPERVSMPDFDVDFC+ RD+VID+V+
Sbjct 360 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 419
Query 415 RTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEME 474
YGR+AVSQI TFGTMAAK IRDV RVLG +G DRISK+VP P G+ L++A E
Sbjct 420 EMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDP-GMTLEKAFIAE 478
Query 475 PQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDAD 534
P L+++ +++ E+ + LEG TRN GKHAGGVVI+P ITD++ + CDA+
Sbjct 479 PALQELYDA-----DEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAE 533
Query 535 GTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQS--EIPLDIANVPLDD 592
G V Q+DK+DVE AGLVKFDFLGLR LT+I+ A+ +N R++ + P+ I +PLDD
Sbjct 534 GNFPVTQFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDD 593
Query 593 KDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIH 650
++ DA TTAVFQ ES GMK+++K +P FE+IIA V+L+RPGP+ ++ +FI
Sbjct 594 ARSFRNLQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFID 653
Query 651 RMHGGEF------EYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704
R HG E ++ H L+ +LEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMG
Sbjct 654 RKHGREAISYPDEKWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713
Query 705 KKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764
KKKPEEM KQR +F +GA + +D A IFD +EKFAGYGFNKSH+AAYALV+Y T W
Sbjct 714 KKKPEEMAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773
Query 765 LKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVY 824
LK HYPAEFMAAV++++M NT+ +V L+D+C+N L VLPP +N LY F+ D IVY
Sbjct 774 LKTHYPAEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDDNGAIVY 833
Query 825 GLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQI 884
G+GAIKGVGE +++++++R K G + DLFDFC RIDLKK+NKR +E LI AGALD L
Sbjct 834 GIGAIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGP 893
Query 885 ERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEV----EEVQRKPAKPVKPWSDEVRLKG 940
R+++MA + +AV+AA Q Q G D+FG + EEV++K + V W ++VRL+G
Sbjct 894 HRAAMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQ-VPEWPEKVRLEG 952
Query 941 EKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVLDVANFPNRM--- 997
E++TLGLYLTGHP+D Y EL + +LNE PTRR + AGLV+ +
Sbjct 953 ERETLGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTVAGLVIAARVMTTKRGTR 1012
Query 998 --VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSL 1055
++TLDD + R+EV E R+ + + ++++V+ G++ + + L
Sbjct 1013 IGLMTLDDRSGRMEVMLYSEALDRYAEWLEKDKILVVSGQVSFDDFNGGLKMSAREVMDL 1072
Query 1056 NEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVH 1115
R+K A + I + QI + +I+ P +PV + ++P A A +
Sbjct 1073 GSAREKFARGLSISILQSQIDQQFFERFSHILEP----HRAGTVPVNVYYQRPDARARLT 1128
Query 1116 LGQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145
LG W+V P D LL +L+ G D + +E+
Sbjct 1129 LGTEWRVTPSDTLLDELKQLLGHDQVELEF 1158
>P14567 DNA polymerase III subunit alpha [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=1160
Score = 1061 bits (2743), Expect = 0.0
Identities = 571/1171 (49%), Positives = 784/1171 (67%), Gaps = 43/1171 (4%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61
+FVHL +H+++S+ + + + L+K A MPALA+TD +NL VKFY + GIKP
Sbjct 5 RFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64
Query 62 ILGSVVR-----LNDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116
I+G+ L D +T+LA N G++ LT ++S+ + G + P ++++W++E
Sbjct 65 IVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVEL 124
Query 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175
+ +I+L G + DVG+ L N E + ++ F +R ++ L RT R EE Y+
Sbjct 125 KEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHA 184
Query 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235
AV+LA + VVA NDV F+E DDFDAHE RV I DG+ L D +RPR YS +QY ++
Sbjct 185 AVELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244
Query 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295
EM ELFSDIP A+ENT IA+RCNV+++LG YFLP +P D T + Y +KEGLEER
Sbjct 245 EMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGD-MTTEDYLVKKAKEGLEER 303
Query 296 LNHLYPIETRDQDWPEIRKP-YDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVG 354
L L+P D++ + R+P YDER++ E+ +I +MGFPGYFLIVM+FIQW+K NGVPVG
Sbjct 304 LAFLFP----DEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVG 359
Query 355 PGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVS 414
PGRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ RD+VI++V+
Sbjct 360 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVA 419
Query 415 RTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEME 474
YGR+AVSQI TFGTMAAK IRDV RVLG YG DRISK+VP P G+ L +A E E
Sbjct 420 DMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDP-GMTLAKAFEAE 478
Query 475 PQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDAD 534
PQL +I +++ + +MA KLEG+TRN GKHAGGVVIAP KITD++ + CD +
Sbjct 479 PQLPEIYEA-----DEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEE 533
Query 535 GTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRI--QSEIPLDIANVPLDD 592
G + V Q+DK DVE AGLVKFDFLGLR LT+I A++ INKR E PLDIA +PLDD
Sbjct 534 GKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDD 593
Query 593 KDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIH 650
K ++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI
Sbjct 594 KKSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFID 653
Query 651 RMHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704
R HG E ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMG
Sbjct 654 RKHGREELSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMG 713
Query 705 KKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764
KKKPEEM KQR +F +GA + ID A IFD +EKFAGYGFNKSH+AAYALV+Y T W
Sbjct 714 KKKPEEMAKQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 773
Query 765 LKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVY 824
LKAHYPAEFMAAV++++M NT+ +V L+D+C L++LPP +N LYHFH +DE IVY
Sbjct 774 LKAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVY 833
Query 825 GLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQI 884
G+GAIKGVGE ++++ID+R + G + +LFD C R D KK+N+R LE LI +GA D L
Sbjct 834 GIGAIKGVGEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGP 893
Query 885 ERSSLMAQLPEAVQAAEQARQNRETGIMDLFG----EVEEVQRKPAKPVKPWSDEVRLKG 940
R++LM L +A++AA+Q + G D+FG E E++++ A +PW ++V L G
Sbjct 894 HRAALMNSLGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYAS-CQPWPEQVVLDG 952
Query 941 EKDTLGLYLTGHPIDVYRPELKSFI-PAKLNEVTPTRRGVTTVFAGLVLD----VANFPN 995
E++TLGLYLTGHPI+ Y E++ ++ +L ++ PT RG T AGLV+ V N
Sbjct 953 ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGN 1012
Query 996 RM-VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFS 1054
R+ + TLDD + R+EV + +++ ++ ++++++ G++ + +
Sbjct 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMD 1072
Query 1055 LNEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEV 1114
++E R+K A + I + QI L + L+ + P IPV L ++ A A +
Sbjct 1073 IDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEP----HRSGTIPVHLYYQRADARARL 1128
Query 1115 HLGQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145
G W+V+P D LL LR G + + +E+
Sbjct 1129 RFGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159
>Q9CPK3 DNA polymerase III subunit alpha [Pasteurella multocida
(strain Pm70)]
Length=1159
Score = 1057 bits (2734), Expect = 0.0
Identities = 564/1170 (48%), Positives = 777/1170 (66%), Gaps = 41/1170 (4%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61
+FVHL +H++FS+ I ++ LIKA V + M A+ LTD +N V+FY L G+KP
Sbjct 5 RFVHLRVHSDFSMINGIAKVKPLIKACVDNHMVAMGLTDFTNFCGLVRFYGEALSAGVKP 64
Query 62 ILGSVVRLN-----DPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116
I+G+ V + D +TLLA N G+ +T ++S+ + G Q +P + + W+ E
Sbjct 65 IIGADVLVRSELCGDEPFELTLLAKNNIGYHNITLLLSKAYERGYQ-DLPYLDQAWLAEH 123
Query 117 HQDIIVLLGQHS-DVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175
+ IIVL G H+ DVGK L + + E + +Q+ F + Y++L+RT R EE Y+
Sbjct 124 REGIIVLSGGHNGDVGKKLLKGHAAEIESAVAFYQDFFPDHFYLSLSRTGRYEEERYVSL 183
Query 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235
A+ LA + + VVA NDV F+ DDF+AHE RV I D Y L D +RP++Y+++QYF++
Sbjct 184 ALTLAEEKGLPVVATNDVLFLHEDDFEAHEIRVAIHDSYTLDDPKRPKLYTNQQYFRSEQ 243
Query 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295
EM +LF+D+PSA+ENT IAQRCNV+++LG YFLP +P D T D + SKEGLEER
Sbjct 244 EMCDLFADVPSALENTLLIAQRCNVTIRLGEYFLPQFPTGDLSTED-FLVKKSKEGLEER 302
Query 296 LNHLYPIETRDQDWPEIRKP-YDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVG 354
L L+P D+ + R+P YDER++ E+ +I +MGFPGYFLIVM+FIQW+K N +PVG
Sbjct 303 LKFLFP----DEKVRQARRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVG 358
Query 355 PGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVS 414
PGRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ GRDRVID+V+
Sbjct 359 PGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDHVA 418
Query 415 RTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEME 474
TYGR AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E
Sbjct 419 ETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFAAE 477
Query 475 PQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDAD 534
PQL+ + + +++ + +MA KLEG+TRN GKHAGGVVI+PG ITD+S + CD++
Sbjct 478 PQLQAVYDS-----DEEVKALIDMARKLEGVTRNAGKHAGGVVISPGLITDFSPLYCDSE 532
Query 535 GTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSE--IPLDIANVPLDD 592
G + V +DK+DVE AGLVKFDFLGLR LT+I+ A+ IN R+ E P+DIA +PLDD
Sbjct 533 GKHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDMINTRLAKEGKPPVDIATIPLDD 592
Query 593 KDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIH 650
++ + + TTAVFQ ES GMK ++K +P FE+IIA V+L+RPGP++ ++ +FI
Sbjct 593 PASFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLESGMVQNFID 652
Query 651 RMHGGEF------EYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMG 704
R HG E EY H L+ +LEPTYG++VYQEQVMQ AQ AGYTLGGADLLRRAMG
Sbjct 653 RKHGNEVVAYPDPEYQHDSLKPILEPTYGVIVYQEQVMQIAQELAGYTLGGADLLRRAMG 712
Query 705 KKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAW 764
KKKPEEM QR+IF KGA +K +D A IFD +EKFAGYGFNKSH+AAYALV+Y T W
Sbjct 713 KKKPEEMAAQREIFEKGAIQKGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLW 772
Query 765 LKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVY 824
LK HYPAEFMAAV++SEM NTD IV L D+C L+V PP +N +HF ++ IVY
Sbjct 773 LKTHYPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVAPPDINTGKHHFSVNEYGEIVY 832
Query 825 GLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQI 884
G+GAIKGVGE ++++I +R + G + DLFD C R+DLKKIN+RT E+LI +GA D L
Sbjct 833 GIGAIKGVGEGPIEALISAREQGGIFKDLFDLCARVDLKKINRRTFESLILSGAFDKLGP 892
Query 885 ERSSLMAQLPEAVQAAEQARQNRETGIMDLFG---EVEEVQRKPAKPVKPWSDEVRLKGE 941
R++L L +A++A++Q ++ G D+FG E E K WS++V L+GE
Sbjct 893 HRAALSKNLEDALKASDQHAKDAAMGQADMFGVLTESHEDVEKAYASTPRWSEKVILEGE 952
Query 942 KDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLVLD----VANFPNRM 997
++TLGLYL+ HPI Y EL + +L ++ P RG + +GL++ V NR+
Sbjct 953 RETLGLYLSSHPISPYLKELAHYSATRLKDLVPNSRGQMSTVSGLLVSSRFAVTKKGNRL 1012
Query 998 -VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSLN 1056
+ TLDD + R++++ E ++ D + + V+++ G++ E + + SL+
Sbjct 1013 GIATLDDRSGRLDITLFGEALDKYADKLQKDTVIIVSGQVSFDEFSGGLKMSVRELMSLD 1072
Query 1057 EIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVHL 1116
E R + A + I +EE + T +L+ ++ P+ +P+ + V +
Sbjct 1073 EARSRYAKSLAICLSEENMKPTFIRELKALLTPYSG----GTLPIYVYYASTAGQCRVKM 1128
Query 1117 GQNWKVAPLDELLIKLRDYFGKDAIYIEYQ 1146
G W V P D+L +L + G++A+ +E+Q
Sbjct 1129 GVQWSVNPTDQLFTELAEKLGENAVELEFQ 1158
>Q8FL05 DNA polymerase III subunit alpha [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=1160
Score = 1051 bits (2717), Expect = 0.0
Identities = 565/1170 (48%), Positives = 781/1170 (67%), Gaps = 41/1170 (4%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61
+FVHL +H+++S+ + + + L+K A MPALA+TD +NL VKFY + GIKP
Sbjct 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64
Query 62 ILGSVVR-----LNDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116
I+G+ L D +T+LA N G++ LT ++S+ + G + P + ++W++E
Sbjct 65 IVGADFNVQCDLLGDELTHLTVLAANNIGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124
Query 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175
++ +I+L G + DVG+ L N + + ++E F +R ++ L RT R EE Y+
Sbjct 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184
Query 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235
AV+LA + VVA NDV FI+ DFDAHE RV I DG+ L D +RPR YS +QY ++
Sbjct 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244
Query 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295
EM ELF+DIP A+ NT IA+RCNV+++LG YFLP +P D T D Y +KEGLEER
Sbjct 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303
Query 296 LNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGP 355
L L+P E ++ + R YDER++ E+ +I +MGFPGYFLIVM+FIQW+K NGVPVGP
Sbjct 304 LAFLFPDE---EERLKRRPEYDERLDTELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query 356 GRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSR 415
GRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ RD+VI++V+
Sbjct 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query 416 TYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEMEP 475
YGR+AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E EP
Sbjct 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFEAEP 479
Query 476 QLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADG 535
QL +I +++ + +MA KLEG+TRN GKHAGGVVIAP KITD++ + CD +G
Sbjct 480 QLPEIYEA-----DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534
Query 536 TNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRI--QSEIPLDIANVPLDDK 593
+ V Q+DK DVE AGLVKFDFLGLR LT+I A++ INKR E PLDIA +PLDDK
Sbjct 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594
Query 594 DAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHR 651
++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI R
Sbjct 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654
Query 652 MHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGK 705
HG E ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGK
Sbjct 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714
Query 706 KKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 765
KKPEEM KQR +F +GA + I+ A IFD +EKFAGYGFNKSH+AAYALV+Y T WL
Sbjct 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774
Query 766 KAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYG 825
KAHYPAEFMAAV++++M NT+ +V L+D+C L++LPP +N LYHFH +D+ IVYG
Sbjct 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834
Query 826 LGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIE 885
+GAIKGVGE ++++I++R K G + +LFD C R D KK+N+R LE LI +GA D L
Sbjct 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894
Query 886 RSSLMAQLPEAVQAAEQARQNRETGIMDLFG----EVEEVQRKPAKPVKPWSDEVRLKGE 941
R++LM L +A++AA+Q + G D+FG E E++++ A +PW ++V L GE
Sbjct 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS-CQPWPEQVVLDGE 953
Query 942 KDTLGLYLTGHPIDVYRPELKSFI-PAKLNEVTPTRRGVTTVFAGLVLD----VANFPNR 996
++TLGLYLTGHPI+ Y E++ ++ +L ++ PT RG T AGLV+ V NR
Sbjct 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVVAARVMVTKRGNR 1013
Query 997 M-VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSL 1055
+ + TLDD + R+EV + +++ ++ ++++++ G++ + + +
Sbjct 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073
Query 1056 NEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVH 1115
+E R+K A + I + QI L + L+ + P IPV L ++ A A +
Sbjct 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEP----HRSGTIPVHLYYQRADARARLR 1129
Query 1116 LGQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145
G W+V+P D LL LR G + + +E+
Sbjct 1130 FGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159
>Q8X8X5 DNA polymerase III subunit alpha [Escherichia coli O157:H7]
Length=1160
Score = 1050 bits (2716), Expect = 0.0
Identities = 565/1170 (48%), Positives = 780/1170 (67%), Gaps = 41/1170 (4%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61
+FVHL +H+++S+ + + + L+K A MPALA+TD +NL VKFY + GIKP
Sbjct 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64
Query 62 ILGSVVR-----LNDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116
I+G+ L D +T+LA N G++ LT ++S+ + G + P + ++W++E
Sbjct 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124
Query 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175
++ +I+L G + DVG+ L N + + ++E F +R ++ L RT R EE Y+
Sbjct 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184
Query 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235
AV+LA + VVA NDV FI+ DFDAHE RV I DG+ L D +RPR YS +QY ++
Sbjct 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244
Query 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295
EM ELF+DIP A+ NT IA+RCNV+++LG YFLP +P D T D Y +KEGLEER
Sbjct 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303
Query 296 LNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGP 355
L L+P E ++ + R YDER+E E+ +I +MGFPGYFLIVM+FIQW+K NGVPVGP
Sbjct 304 LAFLFPDE---EERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query 356 GRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSR 415
GRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ RD+VI++V+
Sbjct 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query 416 TYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEMEP 475
YGR+AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E EP
Sbjct 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFEAEP 479
Query 476 QLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADG 535
QL +I +++ + +MA KLEG+TRN GKHAGGVVIAP KITD++ + CD +G
Sbjct 480 QLPEIYEA-----DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534
Query 536 TNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRI--QSEIPLDIANVPLDDK 593
+ V Q+DK DVE AGLVKFDFLGLR LT+I A++ INKR E PLDIA +PLDDK
Sbjct 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594
Query 594 DAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHR 651
++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI R
Sbjct 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654
Query 652 MHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGK 705
HG E ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGK
Sbjct 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714
Query 706 KKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 765
KKPEEM KQR +F +GA + I+ A IFD +EKFAGYGFNKSH+AAYALV+Y T WL
Sbjct 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774
Query 766 KAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYG 825
KAHYPAEFMAAV++++M NT+ +V L+D+C L++LPP +N LYHFH +D+ IVYG
Sbjct 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834
Query 826 LGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIE 885
+GAIKGVGE ++++I++R K G + +LFD C R D KK+N+R LE LI +GA D L
Sbjct 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894
Query 886 RSSLMAQLPEAVQAAEQARQNRETGIMDLFG----EVEEVQRKPAKPVKPWSDEVRLKGE 941
R++LM L +A++AA+Q + G D+FG E E++++ A +PW ++V L GE
Sbjct 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS-CQPWPEQVVLDGE 953
Query 942 KDTLGLYLTGHPIDVYRPELKSFI-PAKLNEVTPTRRGVTTVFAGLVLD----VANFPNR 996
++TLGLYLTGHPI+ Y E++ ++ +L ++ PT RG AGLV+ V NR
Sbjct 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013
Query 997 M-VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSL 1055
+ + TLDD + R+EV + +++ ++ ++++++ G++ + + +
Sbjct 1014 IGICTLDDRSGRLEVMLFTDALDKYQHLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073
Query 1056 NEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVH 1115
+E R+K A + I + QI L + L+ + P IPV L ++ A A +
Sbjct 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEP----HRSGTIPVHLYYQRADARARLR 1129
Query 1116 LGQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145
G W+V+P D LL LR G + + +E+
Sbjct 1130 FGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159
>P10443 DNA polymerase III subunit alpha [Escherichia coli (strain
K12)]
Length=1160
Score = 1050 bits (2716), Expect = 0.0
Identities = 565/1170 (48%), Positives = 780/1170 (67%), Gaps = 41/1170 (4%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61
+FVHL +H+++S+ + + + L+K A MPALA+TD +NL VKFY + GIKP
Sbjct 5 RFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKP 64
Query 62 ILGSVVR-----LNDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116
I+G+ L D +T+LA N G++ LT ++S+ + G + P + ++W++E
Sbjct 65 IVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIEL 124
Query 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175
++ +I+L G + DVG+ L N + + ++E F +R ++ L RT R EE Y+
Sbjct 125 NEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHA 184
Query 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235
AV+LA + VVA NDV FI+ DFDAHE RV I DG+ L D +RPR YS +QY ++
Sbjct 185 AVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEE 244
Query 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295
EM ELF+DIP A+ NT IA+RCNV+++LG YFLP +P D T D Y +KEGLEER
Sbjct 245 EMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTED-YLVKRAKEGLEER 303
Query 296 LNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGP 355
L L+P E ++ + R YDER+E E+ +I +MGFPGYFLIVM+FIQW+K NGVPVGP
Sbjct 304 LAFLFPDE---EERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360
Query 356 GRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSR 415
GRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ RD+VI++V+
Sbjct 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420
Query 416 TYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEMEP 475
YGR+AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E EP
Sbjct 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFEAEP 479
Query 476 QLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADG 535
QL +I +++ + +MA KLEG+TRN GKHAGGVVIAP KITD++ + CD +G
Sbjct 480 QLPEIYEA-----DEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEG 534
Query 536 TNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRI--QSEIPLDIANVPLDDK 593
+ V Q+DK DVE AGLVKFDFLGLR LT+I A++ INKR E PLDIA +PLDDK
Sbjct 535 KHPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDK 594
Query 594 DAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHR 651
++ + + TTAVFQ ES GMK ++K +P FE++IA V+L+RPGP+ ++ +FI R
Sbjct 595 KSFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDR 654
Query 652 MHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGK 705
HG E ++ H L+ VLEPTYGI++YQEQVMQ AQ +GYTLGGAD+LRRAMGK
Sbjct 655 KHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK 714
Query 706 KKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 765
KKPEEM KQR +F +GA + I+ A IFD +EKFAGYGFNKSH+AAYALV+Y T WL
Sbjct 715 KKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774
Query 766 KAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYG 825
KAHYPAEFMAAV++++M NT+ +V L+D+C L++LPP +N LYHFH +D+ IVYG
Sbjct 775 KAHYPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYG 834
Query 826 LGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIE 885
+GAIKGVGE ++++I++R K G + +LFD C R D KK+N+R LE LI +GA D L
Sbjct 835 IGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPH 894
Query 886 RSSLMAQLPEAVQAAEQARQNRETGIMDLFG----EVEEVQRKPAKPVKPWSDEVRLKGE 941
R++LM L +A++AA+Q + G D+FG E E++++ A +PW ++V L GE
Sbjct 895 RAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYAS-CQPWPEQVVLDGE 953
Query 942 KDTLGLYLTGHPIDVYRPELKSFI-PAKLNEVTPTRRGVTTVFAGLVLD----VANFPNR 996
++TLGLYLTGHPI+ Y E++ ++ +L ++ PT RG AGLV+ V NR
Sbjct 954 RETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNR 1013
Query 997 M-VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSL 1055
+ + TLDD + R+EV + +++ ++ ++++++ G++ + + +
Sbjct 1014 IGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDI 1073
Query 1056 NEIRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVH 1115
+E R+K A + I + QI L + L+ + P IPV L ++ A A +
Sbjct 1074 DEAREKYARGLAISLTDRQIDDQLLNRLRQSLEP----HRSGTIPVHLYYQRADARARLR 1129
Query 1116 LGQNWKVAPLDELLIKLRDYFGKDAIYIEY 1145
G W+V+P D LL LR G + + +E+
Sbjct 1130 FGATWRVSPSDRLLNDLRGLIGSEQVELEF 1159
>P43743 DNA polymerase III subunit alpha [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=1159
Score = 1039 bits (2687), Expect = 0.0
Identities = 552/1169 (47%), Positives = 776/1169 (66%), Gaps = 39/1169 (3%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKP 61
+F+HL HT+FS+ +SIV++ L+KA ++M A+ LTD +N V FY+ L G+KP
Sbjct 6 RFIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMKP 65
Query 62 ILGSVVRLNDP-----EHRITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEWILEQ 116
I+G+ V++ P +TLLA N+G++ +T ++S+ + G +P + ++W++E
Sbjct 66 IIGADVKVKSPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYN-DLPYIDQDWLIEH 124
Query 117 HQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEEDYMVE 175
+I+L G DVGK L N + E + +QE F + Y+AL+RT R EE Y+
Sbjct 125 RDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERYIQA 184
Query 176 AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYFKTAS 235
A+KLA + ++ +VA NDV F+ +DF+AHE RV I DGY L D +RP+ Y+S+QYF++
Sbjct 185 ALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDDPKRPKCYTSQQYFRSEE 244
Query 236 EMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEGLEER 295
+M +LF+DIPSA+ENT IAQRC+V+L+LG YFLP +P D T D + SKEGLEER
Sbjct 245 DMCKLFADIPSALENTLLIAQRCSVTLRLGQYFLPQFPTGDLSTED-FLVQKSKEGLEER 303
Query 296 LNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGP 355
L L+P E E R YDER++ E+ +I +MGFPGYFLIVM+FIQW+K N +PVGP
Sbjct 304 LVFLFPDEKVRL---EKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGP 360
Query 356 GRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSR 415
GRGSGAGSLVAY+LKITDLDPL +DLLFERFLNPERVSMPDFDVDFC+ GRDRVI++V+
Sbjct 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEHVAE 420
Query 416 TYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLGVDLKQAIEMEP 475
TYGR AVSQI TFGTMAAK IRDV RVLG YG DRISK++P P G+ L +A E EP
Sbjct 421 TYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDP-GMTLAKAFETEP 479
Query 476 QLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADG 535
QL+ + +++ + MA KLEG+TRN GKHAGGVVI+P ITD++ + CD +G
Sbjct 480 QLQTAYDS-----DEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYCDNEG 534
Query 536 TNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRI--QSEIPLDIANVPLDDK 593
+ V +DK+DVE AGLVKFDFLGLR LT+I+ A+ IN R+ + + +DIA +PLDD
Sbjct 535 LHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIPLDDP 594
Query 594 DAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHR 651
+++ + + TTAVFQ ES GMK ++K +P FE+IIA V+L+RPGP+ ++ +FI R
Sbjct 595 ESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDR 654
Query 652 MHGGE------FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGK 705
HG E EY H L+ +LEPTYGI++YQEQVMQ AQ AGYTLGGADLLRRAMGK
Sbjct 655 KHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRRAMGK 714
Query 706 KKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWL 765
KKPEEM KQR +F +GA + ID + IFD +EKFAGYGFNKSH+AAYALV+Y T WL
Sbjct 715 KKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWL 774
Query 766 KAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYG 825
K H+PAEFMAAV++SEM NTD IV L D+C L+V PP +N+ +HF +++ IVYG
Sbjct 775 KTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHHFSVNEQGEIVYG 834
Query 826 LGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIE 885
+GAIKGVGE +++++ +R + G + DLFD C R+DLKKIN+RT E+LI +GA D L
Sbjct 835 IGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDKLGPH 894
Query 886 RSSLMAQLPEAVQAAEQARQNRETGIMDLFG---EVEEVQRKPAKPVKPWSDEVRLKGEK 942
R++L L +A++A++Q ++ G D+FG E E P++++ L GE+
Sbjct 895 RAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQILDGER 954
Query 943 DTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVFAGLV----LDVANFPNRM- 997
+TLGLYL+ HP+ Y EL + +L ++ P RRG + AGLV + + NR+
Sbjct 955 ETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKGNRLG 1014
Query 998 VITLDDGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMARLSKAFSLNE 1057
+ TLDD + R++++ E ++F + + + V+V G++ + + + +L+E
Sbjct 1015 IATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVSFDDFSGGLKMTVRELMTLDE 1074
Query 1058 IRQKRANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQPYATAEVHLG 1117
R + + I +E QI+ + + ++ P +P+ + + P A + LG
Sbjct 1075 ARSRYVKSLAISLSEHQITPSFIKQFKALLEPVSG----GTLPINVYYQSPKGRALLRLG 1130
Query 1118 QNWKVAPLDELLIKLRDYFGKDAIYIEYQ 1146
W + P DE+L +L + G+ A+ +E++
Sbjct 1131 VQWSIIPTDEILTELVNLLGESAVELEFE 1159
>Q87EY0 DNA polymerase III subunit alpha [Xylella fastidiosa (strain
Temecula1 / ATCC 700964)]
Length=1193
Score = 998 bits (2581), Expect = 0.0
Identities = 544/1094 (50%), Positives = 720/1094 (66%), Gaps = 71/1094 (6%)
Query 3 FVHLGIHTEFSITESIVRIPD--------------LIKAAVQDDMPALALTDLSNLHAAV 48
FVHL IHTEFS+ +S +R+P+ L+ AV+ +PALA+TDL+NL A +
Sbjct 6 FVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLFALI 65
Query 49 KFYTSCLKKGIKPILGSVVRLNDPEHR---ITLLAMTNDGWKGLTEIVSRGHIEGQQLSI 105
KFY + GIKPI G+ + + +PEH +TLL + G+ L++++SRG +EG +
Sbjct 66 KFYKAAETVGIKPISGADLLIAEPEHPPWGMTLLCRDHAGYLNLSQLISRGWLEGHRPEG 125
Query 106 P-CVQKEWILEQHQDIIVLLGQHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRT 164
V +W+ + H+++ L+G+HS G++L AE L WQ FG+ +++ LTRT
Sbjct 126 GVAVHPDWVRDHHKNLFALIGRHSLAGQLLAKGRADLAEQQLADWQHVFGDGLHLELTRT 185
Query 165 QRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRI 224
R GEE + A+++A I V+A NDV F+ + DF AHEARVCIA G +L D +RPR
Sbjct 186 GRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVQSDFLAHEARVCIASGRMLDDPKRPRT 245
Query 225 YSSEQYFKTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYF 284
YS +QY +++ EM LF+DIP A++NT +AQRCN+ ++LGTYFLP+YP+P+ T+D++
Sbjct 246 YSEQQYLRSSEEMAALFADIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVPNDETLDSWI 305
Query 285 EHLSKEGLEERL--NHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDF 342
S EGLE RL + L P +TR+ Y R+E+E+ I+KMGF GYFLIV DF
Sbjct 306 RKQSHEGLEARLLKHPLAPGQTRED--------YVTRLEFELDTIIKMGFSGYFLIVADF 357
Query 343 IQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFC 402
IQW K G+P+GPGRGSGAGSLVA++L ITDLDPL Y+LLFERFLNPERVSMPDFD+DFC
Sbjct 358 IQWGKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVSMPDFDIDFC 417
Query 403 IAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKP 462
+ RD VI YV+R YGRE VSQI T+GTMAAK +RDV RVLG YGL D ++K++P+
Sbjct 418 MERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSVAKLIPST- 476
Query 463 LGVDLKQAIEMEPQLKDIVTNP---SNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519
LG+ LK A+ E + D + +D E+ +A +LE +TRN GKHAGGVVIA
Sbjct 477 LGITLKDAMG-EGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGGVVIA 535
Query 520 PGKITDYSAVLCDAD----GTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINK 575
P +T++ + + D G N V Q+DK+DVE GLVKFDFLGLR LT+I+ AV+ INK
Sbjct 536 PNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINK 595
Query 576 RIQSEI--PLDIANVPLDDKDAYL-VFADANTTAVFQFESVGMKKMLKEARPSKFEEIIA 632
R P+DI +PLDD Y VFA NT+AVFQFES GM+++LK+ARP +FE++IA
Sbjct 596 RHARACIDPVDITALPLDDIPTYKDVFASGNTSAVFQFESSGMRRLLKDARPDRFEDLIA 655
Query 633 FVSLYRPGPMDLIPDFIHRMHG-GEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGY 691
VSLYRPGPMDLIP+F R HG E Y P +++L+ TYGIMVYQEQVMQ AQ GY
Sbjct 656 LVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQEQVMQMAQIVGGY 715
Query 692 TLGGADLLRRAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSH 751
+LG ADLLRRAMGKK P EM K R+IF +GAA+ +D A+ IFD MEKFAGYGFNKSH
Sbjct 716 SLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFAGYGFNKSH 775
Query 752 AAAYALVAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSL 811
AAAYALV+Y TAWLK HYPAEFMAA LSS+M NTD +V +D+ RN L+VL P++N S
Sbjct 776 AAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLNLKVLRPNINHSA 835
Query 812 YHFHASDERTIVYGLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLE 871
Y F A+ TI YGLGAIKGVG+ ++++ R+ GPYT L DFC R+ K+N+R LE
Sbjct 836 YMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTRVTSAKLNRRALE 895
Query 872 ALIRAGALDCLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKPAKPV-- 929
A+I AGALD L R+S+M QLPE ++A EQ + RE+G LFG + P PV
Sbjct 896 AMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNAD-----PGTPVIQ 950
Query 930 ------KPWSDEVRLKGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTR------R 977
+ W L GE++TLGLY +GHP D YR ++K + LN R R
Sbjct 951 LDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERILGSQQR 1010
Query 978 G----------VTTVFAGLVLDVANFPNRMV-ITLDDGTARIEVSCNHERFQRFKDIVVV 1026
G V T+ AGLV+ V + V + L+DG RIE S + F ++
Sbjct 1011 GNGEKRTWQPEVNTILAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHLLTR 1070
Query 1027 EQVVVIEGEIYERE 1040
+++++++G + E E
Sbjct 1071 DRILIVKGGLREDE 1084
>Q9PGU4 DNA polymerase III subunit alpha [Xylella fastidiosa (strain
9a5c)]
Length=1193
Score = 997 bits (2577), Expect = 0.0
Identities = 551/1140 (48%), Positives = 734/1140 (64%), Gaps = 77/1140 (7%)
Query 3 FVHLGIHTEFSITESIVRIPD--------------LIKAAVQDDMPALALTDLSNLHAAV 48
FVHL IHTEFS+ +S +R+P+ L+ AV+ +PALA+TDL+NL A +
Sbjct 6 FVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNNLFALI 65
Query 49 KFYTSCLKKGIKPILGSVVRLNDPEHR---ITLLAMTNDGWKGLTEIVSRGHIEGQQLSI 105
KFY + GIKPI G+ + + +PEH +TLL + G+ L++++SRG +EG +
Sbjct 66 KFYKAAETVGIKPISGADLLIAEPEHTPWGMTLLCRDHAGYLNLSQLISRGWLEGHRPEG 125
Query 106 P-CVQKEWILEQHQDIIVLLGQHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRT 164
V +W+ + H+++ L+G+HS G++ AE L WQ FGN +++ LTRT
Sbjct 126 GVAVHPDWVRDHHKNLFALIGRHSLAGQLFAKGRADLAEQQLADWQHVFGNGLHLELTRT 185
Query 165 QRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRI 224
R GEE + A+++A I V+A NDV F+ DF AHEARVCIA G +L D +RPR
Sbjct 186 GRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEARVCIASGRMLDDPKRPRT 245
Query 225 YSSEQYFKTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYF 284
YS +QY +++ EM LF+DIP A++NT +AQRCN+ ++LGTYFLP+YP+P+ T+D++
Sbjct 246 YSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVPNDETLDSWI 305
Query 285 EHLSKEGLEERL--NHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDF 342
S EGLE RL + L P +TR+ Y R+E+E+ I+KMGF GYFLIV DF
Sbjct 306 RKQSHEGLEARLLKHPLAPGQTRED--------YVTRLEFELDTIIKMGFSGYFLIVADF 357
Query 343 IQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFC 402
IQW K G+P+GPGRGSGAGSLVA++L ITDLDPL Y+LLFERFLNPERVSMPDFD+DFC
Sbjct 358 IQWGKQQGIPIGPGRGSGAGSLVAWTLLITDLDPLPYNLLFERFLNPERVSMPDFDIDFC 417
Query 403 IAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKP 462
+ RD VI YV+R YGRE VSQI T+GTMAAK +RDV RVLG YGL D I+K++P
Sbjct 418 MERRDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSIAKLIPNT- 476
Query 463 LGVDLKQAIEMEPQLKDIVTNP---SNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIA 519
LG+ LK A+ E + D + +D E+ +A +LE +TRN GKHAGGVVIA
Sbjct 477 LGITLKDAMG-EGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGGVVIA 535
Query 520 PGKITDYSAVLCDAD----GTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINK 575
P +T++ + + D G N V Q+DK+DVE GLVKFDFLGLR LT+I+ AV+ INK
Sbjct 536 PNPLTEFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINK 595
Query 576 RIQSEI--PLDIANVPLDDKDAYL-VFADANTTAVFQFESVGMKKMLKEARPSKFEEIIA 632
R P+DI +PLDD Y +FA NT+AVFQFES GM+++LK+ARP +FE++IA
Sbjct 596 RHARACIDPVDITALPLDDIPTYKDIFASGNTSAVFQFESSGMRRLLKDARPDRFEDLIA 655
Query 633 FVSLYRPGPMDLIPDFIHRMHG-GEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGY 691
VSLYRPGPMDLIP+F R HG E Y P +++L+ TYGIMVYQEQVMQ AQ GY
Sbjct 656 LVSLYRPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQEQVMQMAQIVGGY 715
Query 692 TLGGADLLRRAMGKKKPEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSH 751
+LG ADLLRRAMGKK P EM K R+IF +GAA+ +D A+ IFD MEKFAGYGFNKSH
Sbjct 716 SLGSADLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFAGYGFNKSH 775
Query 752 AAAYALVAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSL 811
AAAYALV+Y TAWLK HYPAEFMAA LSS+M NTD +V +D+ RN L+VL P++N S+
Sbjct 776 AAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLNLKVLRPNINHSV 835
Query 812 YHFHASDERTIVYGLGAIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLE 871
Y F A+ TI YGLGAIKGVG+ ++++ R+ GPYT L +FC R+ K+N+R LE
Sbjct 836 YMFEATHADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLNFCTRVASAKLNRRALE 895
Query 872 ALIRAGALDCLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKPAKPV-- 929
A+I AGALD L R+S+M QLPE ++A EQ + RE+G LFG + P+ P
Sbjct 896 AMIHAGALDELGKNRASVMLQLPEVIKATEQMSRERESGQNPLFGNAD-----PSTPAIQ 950
Query 930 ------KPWSDEVRLKGEKDTLGLYLTGHPIDVYRPELKSFIPAKLNEVTPTR------R 977
+ W L GE++TLGLY +GHP D YR ++K + LN R R
Sbjct 951 LDLPECEEWPLTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERILGSQQR 1010
Query 978 G----------VTTVFAGLVLDVANFPNRMV-ITLDDGTARIEVSCNHERFQRFKDIVVV 1026
G V T+ AGLV+ V + V + L+DG RIE S + F ++
Sbjct 1011 GNGEKRTWHPEVNTILAGLVVSVRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHLLTR 1070
Query 1027 EQVVVIEGEIYEREGFDRPMARLSKAFSLNEIRQKRANH------IRIQPAEEQISKTLA 1080
+++++++G + E E D R+ + + ++ A +R A E+I LA
Sbjct 1071 DRILIVKGGLREDEFNDGYSLRIRQCWDYTQLCTDYAQRLLLRVDLRTSDAWERIDAILA 1130
>B8GWS6 DNA polymerase III subunit alpha [Caulobacter vibrioides
(strain NA1000 / CB15N)]
Length=1143
Score = 725 bits (1871), Expect = 0.0
Identities = 421/1059 (40%), Positives = 600/1059 (57%), Gaps = 38/1059 (4%)
Query 3 FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62
FVHL + + +S+ E ++ + K A + MPA L D +NL A+++ + G++PI
Sbjct 9 FVHLRVRSAYSLLEGAIKADQIGKLAAEAKMPAAGLADRANLFGALEYSSYAKDAGVQPI 68
Query 63 LGSVVRL----NDPEHR------ITLLAMTNDGWKGLTEIVSRGHIEGQQLSIPCVQKEW 112
+G + + P R + LLA G+ L+E+ S +++ +L P V
Sbjct 69 IGCAIPVVGIGGGPTERWARAPTLMLLAQNERGYLNLSELSSIAYLDSAELPEPVVPWAK 128
Query 113 ILEQHQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQRAGEED 171
+ E + +I+L G V + + +A L FG+R Y+ L R +
Sbjct 129 VAEHSEGLILLSGGTDGPVDALFAAGKTAEASAALAEMHRVFGDRFYVELQRHGLPRQAA 188
Query 172 YMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIYSSEQYF 231
V A +++ +VA NDV+F + +DAH+A +CI+DG + R R+ + E +F
Sbjct 189 AEPGLVNWAYDHDVPLVATNDVYFAKPGFYDAHDALLCISDGAFVGQDERRRV-TPEHWF 247
Query 232 KTASEMEELFSDIPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFTIDTYFEHLSKEG 291
K A EM +LF+D+P A +NT IA+RC + LP +P DG EH ++EG
Sbjct 248 KPAEEMRKLFADLPEACDNTLDIARRCAFMVHKRDPILPSFPTGDGRNEAEELEHQAREG 307
Query 292 LEERLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGV 351
L+ RL L ++ W +R+++E+GII KMGFPGYFLIV DFI+W K++G+
Sbjct 308 LKMRLEGLTLSAPEEEYW--------KRLDFELGIIKKMGFPGYFLIVSDFIKWGKAHGI 359
Query 352 PVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVID 411
PVGPGRGSGAGSLVA+ L ITDLDPLR+ LLFERFLNPERVSMPDFDVDFC R+ VI
Sbjct 360 PVGPGRGSGAGSLVAWVLTITDLDPLRFGLLFERFLNPERVSMPDFDVDFCQERREEVIS 419
Query 412 YVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPTKPLG-VDLKQA 470
YV YGR+ V+QI TFG++ A+ +RDV RV+ GL DR+ KMVP P V L QA
Sbjct 420 YVQEKYGRDRVAQIITFGSLQARAVLRDVGRVMQLPLGLVDRLCKMVPNNPAAPVTLAQA 479
Query 471 IEMEPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVL 530
I++EP+LK + ++ + + ++AL+LEG+ RN HA G+VI +T + +
Sbjct 480 IDLEPRLKQ-----AKKEDANVSACLDVALQLEGLFRNASTHAAGLVIGDRPLTQLTPLY 534
Query 531 CDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSEIPLDIANVPL 590
D Q++ VE+AGLVKFDFLGL+ LTV++ AV+++ KR +D+ +P
Sbjct 535 KDPRSDLPATQFNMKWVESAGLVKFDFLGLKTLTVLDRAVKHLKKR---GFEIDLGKLPF 591
Query 591 DDKDAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIH 650
DD Y + A T VFQ ES GM+ L++ R EEI A +SLYRPGPMD I F+
Sbjct 592 DDAKTYELLASGQTVGVFQLESQGMRDTLRKMRCGSIEEITALISLYRPGPMDNIDTFVD 651
Query 651 RMHGGE-FEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPE 709
G + + LHP LE+VL+ TYG++VYQEQVMQ AQ AGY+LG ADLLRRAMGKKK E
Sbjct 652 CKFGRKPVDTLHPSLEAVLKETYGVIVYQEQVMQIAQILAGYSLGEADLLRRAMGKKKKE 711
Query 710 EMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHY 769
EM Q+ F+ GA EK + E + IF+ + KFAGYGFNKSHAAAYA ++Y TAWLKA+
Sbjct 712 EMDLQKIRFVSGAKEKNVPEEQSGSIFELVAKFAGYGFNKSHAAAYAFISYQTAWLKANT 771
Query 770 PAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYGLGAI 829
P EF AA +S ++ NTD + D R + V P VN S F + ++Y LGAI
Sbjct 772 PVEFFAASMSLDLSNTDKLAVFHQDARRFGITVRAPDVNRSGADFEV-ENGEVLYALGAI 830
Query 830 KGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIERSSL 889
+ VG +AM+ ++ R + GP+ D+FDF RID +++NKR +E L RAGA D + R+ +
Sbjct 831 RNVGLEAMKHLVAVRAEGGPFRDVFDFVERIDPRQVNKRAIENLARAGAFDSIHKNRAQI 890
Query 890 MAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKPAKPVKPWSDEVRLKGEKDTLGLYL 949
+A + A+ +R+ G LFG R + W+ L E +G YL
Sbjct 891 VASADVLIAHAQSCHADRQGGQGGLFGSDPGAGRPRLSKTENWNQVDLLDEELSAVGFYL 950
Query 950 TGHPIDVYRPELKSFIPAKLNEVTPTRRGVTTVF--AGLVLDVANFPNR-----MVITLD 1002
TGHP++ L+ L E F G+V ++ ++L
Sbjct 951 TGHPLEDMVGMLRRRRTVMLAEAMAQAEAGAEAFRMCGVVRRRQERASQSGEKFAFVSLS 1010
Query 1003 DGTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREG 1041
D T EV E ++ +D++ + V I+ R+G
Sbjct 1011 DPTGEYEVLYPPESLRKCRDVLEPGKAVAIKVRAKARDG 1049
>Q9XDH5 DNA polymerase III subunit alpha [Thermus aquaticus]
Length=1220
Score = 689 bits (1777), Expect = 0.0
Identities = 422/1092 (39%), Positives = 610/1092 (56%), Gaps = 99/1092 (9%)
Query 1 MQFVHLGIHTEFSITESIVRIPDLIKAAVQD--DMPALALTDLSNLHAAVKFYTSCLKKG 58
++F HL HT+FS+ + ++ DL+K + + PALA+TD NL AV+FY G
Sbjct 5 LKFAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMG 64
Query 59 IKPILGSVVR--------------LNDPEHRITLLAMTNDGWKGLTEIVSRGHIEGQQLS 104
+KPI+G L+ +TLLA G++ L + SR ++EG
Sbjct 65 VKPIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEK 124
Query 105 IPCVQKEWILEQHQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTR 163
P + +E + E Q +I L G +++ + + AE L FG+R +I +
Sbjct 125 -PRIDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNEDLSIFGDRFFIEIQN 183
Query 164 TQRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPR 223
++ + A KY +G+VA ND H++ ++D AHE + I L D R R
Sbjct 184 HGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLDDPERWR 243
Query 224 IYSSEQYFKTASEMEELFSDIP---SAIENTYYIAQRCNVSLQLG---TYFLPDYPIPDG 277
E Y KT EM + + +NT IA+ C+V L +G Y +P +P+P+G
Sbjct 244 FPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPRFPLPEG 303
Query 278 FTIDTYFEHLSKEGLEER----------------LNHLYP-----------IETRDQDWP 310
T Y L+ GL R L + P ++ W
Sbjct 304 RTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARVEEKAWE 363
Query 311 EIRK---PYD-----------ERIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGPG 356
E+RK P + R YE+ +I +MGFPGYFLIV D+I WA+ +GV VGPG
Sbjct 364 ELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHGVSVGPG 423
Query 357 RGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRT 416
RGS AGSLVAY++ IT++DPLR+ LLFERFLNPERVSMPD D DF RDRVI YV
Sbjct 424 RGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVIQYVRER 483
Query 417 YGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVPT---KPLGVDLKQAIEM 473
YG + V+QI TFG++A+K A++DVARV G + A+ ++K++P KP L++AI++
Sbjct 484 YGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKP--KPLQEAIQV 541
Query 474 EPQLKDIVTNPSNPDNDDAAEIWEMALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDA 533
P+L+ ++ ++ E+A++LEG+ R+ HA GVVIA +TD ++ D
Sbjct 542 VPELR-----AEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQ 596
Query 534 DGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNINKRIQSEIPLDIANVPLDDK 593
+G V QYD VEA GL+K DFLGLR LT +++A + + + + LD +PLDD
Sbjct 597 EG-RPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKE--SKGVELDYDRLPLDDP 653
Query 594 DAYLVFADANTTAVFQFESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRMH 653
+ + + T VFQ ES GM ++ +P + E+IIA VSLYRPGPM+ IP +I R H
Sbjct 654 KTFELLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHH 713
Query 654 G------GEFEYLHPLLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKK 707
G EF + L +L+ TYGI VYQEQ+MQ A AGY+LG ADLLRRAMGKK+
Sbjct 714 GQEPVSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKR 773
Query 708 PEEMVKQRQIFIKGAAEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKA 767
EEM K R+ F++GA E+ + E AN +FD +E FA YGFNKSHAAAY+L++Y TA++KA
Sbjct 774 VEEMQKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKA 833
Query 768 HYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYGLG 827
HYP EFMAA+LS E ++D + I D R + VLPP VN S + F E I++GL
Sbjct 834 HYPVEFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEE-ILFGLS 892
Query 828 AIKGVGEQAMQSVIDSRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIERS 887
A+K VGE A +++++ R + GP+ L DF R+ + +NKR LE+L++AGALD +R+
Sbjct 893 AVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALDAFG-DRA 951
Query 888 SLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKPAKPVKPWSDEVRLKGEKDTLGL 947
L+A L ++ A + R+ +G++ LF EVEE P P + L+ EK+ LG+
Sbjct 952 RLLASLEPLLRWAAETRERGRSGLVGLFAEVEE---PPLVEASPLDEITMLRYEKEALGI 1008
Query 948 YLTGHPIDVYRPELKSFIPAKLNEVTPTRRGV----TTVFAGLVLDVANFPNR-----MV 998
Y++GHP+ Y P L+ + E++ R + + +G+V +V P R
Sbjct 1009 YVSGHPVLRY-PGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMAR 1067
Query 999 ITLDDGTARIEV 1010
TL D T +EV
Sbjct 1068 FTLSDETGALEV 1079
>Q9Z618 DNA polymerase III subunit alpha [Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145)]
Length=1179
Score = 583 bits (1504), Expect = 0.0
Identities = 375/1111 (34%), Positives = 574/1111 (52%), Gaps = 91/1111 (8%)
Query 3 FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62
F HL +HT++S+ + R+ D+ A + M +A++D NLH A F+ S K G+ PI
Sbjct 6 FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKAGVTPI 65
Query 63 LGSVVRLNDPEHRI--------------------------TLLAMTNDGWKGLTEIVSRG 96
+G + PE R T+ A + G L + S
Sbjct 66 IG-IEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRLSSDA 124
Query 97 HIEGQQLSIPCVQKEWILEQHQDIIVLLGQHS-DVGKMLCSSNPQKAEPLLQAWQEKFGN 155
+ EG P + KE I + + I+ G S +V L + +A +Q+ FG
Sbjct 125 YAEGWLQKWPRMDKETISQWSEGIVASTGCPSGEVQTRLRLGHFDEALKAAADYQDIFGK 184
Query 156 RVYIALTRTQRAGEEDYMVE--AVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADG 213
Y L E ++ V +++ K I + ND H+ + AH+A +CI G
Sbjct 185 DRYF-LELMDHGIEIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATAHDALLCIQTG 243
Query 214 YVLADHRRPRIYSSEQYFKTASEMEELFSDIP--SAIENTYYIAQRCNVSLQLGTY-FLP 270
L+D R R + Y K+ EM + S NT IA+ + + +P
Sbjct 244 KNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTTGMFEKRDLMP 303
Query 271 DYPIPDGFTIDTYFEHLSKEGLEERLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKM 330
+ IP+GFT T+F+ + G+E R P + + Q EYE+ +I++M
Sbjct 304 KFDIPEGFTEITWFQEEVRRGMERRFPGGVPEDRQKQ------------AEYEMDVIIQM 351
Query 331 GFPGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPE 390
GFPGYFL+V DFI WAK+ G+ VGPGRGS AGS+VAY++ ITDLDP+ + L+FERFLNPE
Sbjct 352 GFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPE 411
Query 391 RVSMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGL 450
RVSMPD D+DF R VI YV+ YG + V+ I T+G + AK AI+D ARVLG Y +
Sbjct 412 RVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKNAIKDSARVLGYPYAM 471
Query 451 ADRISKMVPTKPLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWEM------------ 498
DR++K +P LG + I++ +T+P++P +A EI M
Sbjct 472 GDRLTKAMPADVLG----KGIDLNG-----ITDPTHPRYSEAGEIRSMYESEPDVKKVID 522
Query 499 -ALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDF 557
A +EG+ R G HA GV+++ I D++ + + Q+D E+ GL+K DF
Sbjct 523 TAKGVEGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLGLLKMDF 582
Query 558 LGLRNLTVIEDAVQNINKRIQSEIPLDIANVPLDDKDAYLVFADANTTAVFQFESVGMKK 617
LGLRNLT+++DAV+ + I LD+ ++PLDD + + +T VFQF+ M+
Sbjct 583 LGLRNLTIMDDAVKMVKSN--KGIDLDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRS 640
Query 618 MLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRMHGGEFEYLHPL-------LESVLEP 670
+L+ +P FE+I A +LYRPGPM + + + + + P+ L+ VL
Sbjct 641 LLRLMKPDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQEVLAV 700
Query 671 TYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEMVKQRQIFIKGAAEKEIDEA 730
TYG++VYQEQV +AAQ AGY+LG AD+LRR MGKKKP+E+ K +F GA + +
Sbjct 701 TYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNGYSDE 760
Query 731 TANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVF 790
++D + FAGY FNK+H+AAY LV+Y T +LKA+YPAE+MAA+L+S + D
Sbjct 761 AIQALWDVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKDKSAV 820
Query 791 LIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYGLGAIKGVGEQAMQSVIDSRIKNGPY 850
+++CR ++VLPP+VN S+ +F A + I++GL A++ VG ++S+I R G Y
Sbjct 821 YLNECRRMGIKVLPPNVNESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKY 880
Query 851 TDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIERSSLMAQLPEAVQAAEQARQNRETG 910
D+ +++ NKRT E+LI+AGA D + R L AQ + ++ G
Sbjct 881 ASFPDYLDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKRKEAEG 940
Query 911 IMDLFGEV-EEVQRKPAKPV------KPWSDEVRLKGEKDTLGLYLTGHPIDVYRPELKS 963
DLFG + +E +P + W L E++ LGLY++ HP+ L
Sbjct 941 QFDLFGGMGDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSD 1000
Query 964 FIPAKLNEVTPTRRG------VTTVFAGLVLDVANFPNRMVI-TLDDGTARIEVSCNHER 1016
A ++++T G + + +GL + N I T++D +E
Sbjct 1001 KADAGISQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECMFFPAT 1060
Query 1017 FQRFKDIVVVEQVVVIEGEIYEREGFDRPMA 1047
+Q +V + VV ++G + +RE R +A
Sbjct 1061 YQLVSTQLVEDAVVFVKGRLDKREDVPRLVA 1091
>P9WNT7 DNA polymerase III subunit alpha [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=1184
Score = 575 bits (1482), Expect = 0.0
Identities = 380/1106 (34%), Positives = 577/1106 (52%), Gaps = 95/1106 (9%)
Query 3 FVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIKPI 62
FVHL HTE+S+ + +I ++ + MPA+ +TD N+ A +FY S K GIKPI
Sbjct 10 FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69
Query 63 LGSVVRL-------------NDPEHR------------ITLLAMTNDGWKGLTEIVSRGH 97
+G + DP + +T++A G + L ++ S
Sbjct 70 IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129
Query 98 IEGQQLSIPCVQKEWILEQHQDIIVLLGQHS-DVGKMLCSSNPQKAEPLLQAWQEKFG-N 155
EGQ + E I E + II+ G S +V L ++A W+E G +
Sbjct 130 FEGQLSKWSRMDAELIAEHAEGIIITTGCPSGEVQTRLRLGQDREALEAAAKWREIVGPD 189
Query 156 RVYIALTRTQRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYV 215
++ L E +++ NI +A ND H++ RD HEA +C+ G
Sbjct 190 NYFLELMDHGLTIERRVRDGLLEIGRALNIPPLATNDCHYVTRDAAHNHEALLCVQTGKT 249
Query 216 LADHRRPRIYSSEQYFKTASEMEELFSD-IPSAIENTYYIAQRCNVSLQLGTYF--LPDY 272
L+D R + Y K+A+EM +++ D +P A ++T IA+R + T +P +
Sbjct 250 LSDPNRFKFDGDGYYLKSAAEMRQIWDDEVPGACDSTLLIAERVQSYADVWTPRDRMPVF 309
Query 273 PIPDGFTIDTYFEHLSKEGLEERLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGF 332
P+PDG ++ H GL R +P D Y ER YE+ +I GF
Sbjct 310 PVPDGHDQASWLRHEVDAGLRRR----FPAGPPDG--------YRERAAYEIDVICSKGF 357
Query 333 PGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERV 392
P YFLIV D I +A+S G+ VGPGRGS AGSLVAY+L ITD+DP+ + LLFERFLNPER
Sbjct 358 PSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNPERT 417
Query 393 SMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARV-LGK-SYGL 450
SMPD D+DF R ++ Y + +G + V+Q+ TFGT+ K A++D AR+ G+ + +
Sbjct 418 SMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPGFAI 477
Query 451 ADRISKMVPTKPLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAE-------------IWE 497
ADRI+K +P + D+ + +T+PS+ +AAE I++
Sbjct 478 ADRITKALPPAIMAKDIPLS---------GITDPSHERYKEAAEVRGLIETDPDVRTIYQ 528
Query 498 MALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDF 557
A LEG+ RN G HA V+++ +T+ + + +D EA GL+K DF
Sbjct 529 TARGLEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLLKMDF 588
Query 558 LGLRNLTVIEDAVQNINKRIQSEIPLDIANVPLDDKDAYLVFADANTTAVFQFESVGMKK 617
LGLRNLT+I DA+ N+ R I LD+ +VPLDDK Y + +T VFQ + M+
Sbjct 589 LGLRNLTIIGDAIDNV--RANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLDGGPMRD 646
Query 618 MLKEARPSKFEEIIAFVSLYRPGPMDLIP--DFIHRMHGGE-FEYLHPLLE----SVLEP 670
+L+ +P+ FE+++A ++LYRPGPM + D+ R + + + +HP LE +L
Sbjct 647 LLRRMQPTGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAE 706
Query 671 TYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEMVKQRQIFIKGAAEKEIDEA 730
TYG++VYQEQ+M+ AQ A Y+L AD+LR+AMGKKK E + K+ + F G A
Sbjct 707 TYGLIVYQEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQANGFSPA 766
Query 731 TANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVF 790
++D + FA Y FNKSHAA Y +V+Y TA+LKA+YPAE+MA +L+S + D
Sbjct 767 AIKALWDTILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAV 826
Query 791 LIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYGLGAIKGVGEQAMQSVIDSRIKNGPY 850
+ DCR + VLPP VN S +F AS + I YGLGA++ VG + S++ +R G +
Sbjct 827 YLADCRKLGITVLPPDVNESGLNF-ASVGQDIRYGLGAVRNVGANVVGSLLQTRNDKGKF 885
Query 851 TDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIERSSLMAQLPEAVQAAEQARQNRETG 910
TD D+ ++ID+ NK+ E+LI+AGA D L R L +AV + ++ G
Sbjct 886 TDFSDYLNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKKAEALG 945
Query 911 IMDLFGEVEEVQRKPAKPV-------KPWSDEVRLKGEKDTLGLYLTGHPID----VYRP 959
DLFG ++ A PV W D+ +L E++ LGLY++GHP++ +
Sbjct 946 QFDLFGSNDD-GTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAA 1004
Query 960 ELKSFIPAKLNEVTPTRRGVTTVFAGLVLDVANFPNR-----MVITLDDGTARIEVSCNH 1014
++ + IPA L+ P V G++ V N+ L+D T IEV
Sbjct 1005 QVDTAIPAILDGDVPNDAQVRV--GGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFP 1062
Query 1015 ERFQRFKDIVVVEQVVVIEGEIYERE 1040
+ + +V + VV++ ++ R+
Sbjct 1063 HTYSSYGADIVDDAVVLVNAKVAVRD 1088
>Q9RX08 DNA polymerase III subunit alpha [Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074
/ LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)]
Length=1335
Score = 566 bits (1458), Expect = 0.0
Identities = 332/826 (40%), Positives = 481/826 (58%), Gaps = 60/826 (7%)
Query 319 RIEYEVGIILKMGFPGYFLIVMDFIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLR 378
R EYE+ +I MGFP YFLIV D+I WAK + + VGPGRGSGAGSLVAY+++IT+LDPL
Sbjct 473 RAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAGSLVAYAIRITNLDPLE 532
Query 379 YDLLFERFLNPERVSMPDFDVDFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIR 438
++LLFERFLNP+R+SMPDFD+DF A R VI YV YG + V+QIATFGTMA+K ++
Sbjct 533 FELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKVAQIATFGTMASKACLK 592
Query 439 DVARVLGKSYGLADRISKMVPTK-PLGVDLKQAIEMEPQLKDIVTNPSNPDNDDAAEIWE 497
DVARV+G Y D++SK++P K L+QA E P ++ ++ ++ E +E
Sbjct 593 DVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLA-----EDAQLLEAYE 647
Query 498 MALKLEGITRNTGKHAGGVVIAPGKITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDF 557
A KLEG+TR+ HA GVVI ++T+ V+ D G +V QYD VE GL+K DF
Sbjct 648 FAQKLEGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKSVEDIGLIKMDF 707
Query 558 LGLRNLTVIEDAVQNINKRIQSEIPLDIA-------NVPLDDKDAYLVFADANTTAVFQF 610
LGLR L+ +++A KRI E D ++P DD+ Y + + +T VFQ
Sbjct 708 LGLRTLSFLDEA-----KRILRESGTDFEEKYGDFDHIPFDDEKTYELMSRGDTKGVFQL 762
Query 611 ESVGMKKMLKEARPSKFEEIIAFVSLYRPGPMDLIPDFIHRMHGGE--------FEYLHP 662
E G+ + +P + +IIA +LYRPGPM+ IP ++ R HG E F
Sbjct 763 EGAGIADASRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGIEEVDYDKDGFPNSKQ 822
Query 663 LLESVLEPTYGIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEMVKQRQIFIKGA 722
LE +L+ TYGI VYQEQ+MQ A AGY+LGGADLLRRAMGKK EEM +QRQ+F+ GA
Sbjct 823 WLEKILQETYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVVGA 882
Query 723 AEKEIDEATANHIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHYPAEFMAAVLSSEM 782
EK + E N +FD ++ FA YGFNKSH+AAY ++ Y TAWLKA+YP +FMAA+L+ E
Sbjct 883 KEKGVPEDEGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAALLTVER 942
Query 783 QNTDSIVFLIDDCRNNALEVLPPSVNMSLYHFHASDERTIVYGLGAIKGVGEQAMQSVID 842
+++D + + D R L VLPP +N S F + E I++GL AIKG+GE A+ +++
Sbjct 943 RDSDKVAEYVSDARKMDLHVLPPDINRSSSDFAVAGEE-ILFGLYAIKGLGESAVLRILE 1001
Query 843 SRIKNGPYTDLFDFCHRIDLKKINKRTLEALIRAGALDCLQIERSSLMAQLPEAVQAA-- 900
R K G + L DFC R+ K N++ LE+LI++GA D ER L+ L +A++ A
Sbjct 1002 EREKAGAFKSLADFCSRLGNKVCNRKALESLIKSGAFDAFG-ERHQLIESLEDALEDAAG 1060
Query 901 -EQARQNRETGIMDLFGEVEEVQRKPAK-PVKPWSDEVRLKGEKDTLGLYLTGHPIDVYR 958
+ ++G+ +FG E + +P + + P+SD RL EK+ LGLY++GHP++ +
Sbjct 1061 TAEINARAQSGMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEKEALGLYISGHPLEQHE 1120
Query 959 ----------PELKSFIPAKLNEVTPTRRGVTTVFAGLVLDVANFPNR-----MVITLDD 1003
+L ++ L V P +R V AG++ V P + L D
Sbjct 1121 GLREAASCRVSDLDAWF--ALQNVAPGKR-QKAVLAGMIEGVVKKPTKSGGMMARFILAD 1177
Query 1004 GTARIEVSCNHERFQRFKDIVVVEQVVVIEGEIYEREGFDRPMA-RLSKAFSLNEIRQKR 1062
+ ++E+ + R + +V + ++ E+ +G R +A + L+E+ +
Sbjct 1178 ESGQMELVAFSRAYDRIEPKLVNDTPALVIVELEAEDGGLRAIAEEIVSIEQLSEVPKVM 1237
Query 1063 ANHIRIQPAEEQISKTLAHDLQNIILPFCNVDMCQHIPVMLTLEQP 1108
I ++ A S D Q+++ + +P L LE P
Sbjct 1238 YVTIDLETA----SPDALGDFQSVLDEYAG-----SMPTYLRLETP 1274
Score = 127 bits (320), Expect = 2e-32
Identities = 94/303 (31%), Positives = 141/303 (47%), Gaps = 28/303 (9%)
Query 2 QFVHLGIHTEFSITESIVRIPDLIKAAVQ----DDMPALALTDLSNLHAAVKFYTSCLKK 57
+F HL HT++S+ + ++ DL+K A + PALA+TD N+H AV FY +
Sbjct 23 KFAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGM 82
Query 58 GIKPILGSVV-------------RLNDPEHRI---TLLAMTNDGWKGLTEIVSRGHIEGQ 101
+KPI+G R D E I TLLA +G++ L + SRG+ EG
Sbjct 83 EVKPIIGYEAYVVPGFGTRRDRSRAQDGEKGIFHLTLLARDFEGYQNLCRLSSRGYTEGY 142
Query 102 QLSIPCVQKEWILEQHQDIIVLLG-QHSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIA 160
P + E + E H+ II G S+V ++L A L ++E FG+ +I
Sbjct 143 YYK-PRIDHELLQEHHKGIIAFSGCLGSEVQQLLMQGREDDARARLLWYRELFGDNYFIE 201
Query 161 LTRTQRAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHR 220
+ ++ A + IG+VA ND H++++ D AHE + I LAD
Sbjct 202 IQDHGLPEQKKNNPILKAWAQELGIGMVATNDGHYVKKSDATAHETLLAIQTKATLADEN 261
Query 221 RPRIYSSEQYFKTASEMEELFSDI---PSAIENTYYIAQRCNVSLQLG---TYFLPDYPI 274
R + E Y K EM+ +NT +IA+ CNV L +G Y +P PI
Sbjct 262 RFKFPCDEFYVKNLEEMQRALPVSEWGEEPFDNTAHIAELCNVELPVGKKRQYQMPQLPI 321
Query 275 PDG 277
P+G
Sbjct 322 PEG 324
>P74750 DNA polymerase III subunit alpha [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=1355
Score = 514 bits (1325), Expect = 1e-163
Identities = 308/793 (39%), Positives = 469/793 (59%), Gaps = 67/793 (8%)
Query 1 MQFVHLGIHTEFSITESIVRIPDLIKAAVQDDMPALALTDLSNLHAAVKFYTSCLKKGIK 60
M FV L IH+++S+ + ++P LI A++ MPA+ALTD ++ AV+ C K IK
Sbjct 1 MSFVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIK 60
Query 61 PILGSV-------VRLNDPEHRI--TLLAMTNDGWKGLTEIVSRGHIEGQQ----LSIPC 107
PI+G+ + +N R +LA N G++ L ++ + +++G Q + PC
Sbjct 61 PIIGNEMYVINGDIEINKRHRRFHQVVLAKNNQGYRNLVKLTTISNLKGIQGSGIFARPC 120
Query 108 VQKEWILEQHQDIIVLLGQ--HSDVGKMLCSSNPQKAEPLLQAWQEKFGNRVYIALTRTQ 165
+ KE +LEQ+++ +++ +V + + + A + + ++ FG+ Y+ +
Sbjct 121 INKE-LLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQDHG 179
Query 166 RAGEEDYMVEAVKLAAKYNIGVVAHNDVHFIERDDFDAHEARVCIADGYVLADHRRPRIY 225
+ + VK+A + +I +VA ND HFI +D +AH+A +CI G ++ + +R R Y
Sbjct 180 SVEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLR-Y 238
Query 226 SSEQYFKTASEMEELFSD------IPSAIENTYYIAQRCNVSLQLGTYFLPDYPIPDGFT 279
S +Y K+A EM LF D I +AI NT +A + LG +P YPIP T
Sbjct 239 SGTEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPNHT 298
Query 280 IDTYFEHLSKEGLEERLNHLYPIETRDQDWPEIRKPYDERIEYEVGIILKMGFPGYFLIV 339
+TY E ++ +GL ERL + ++ +I Y ER+EYE+ ++ KMGF YFL+V
Sbjct 299 PETYVEDIAWDGLLERL--------KCRERADITPVYKERLEYELRMLEKMGFCTYFLVV 350
Query 340 MDFIQWAKSNGVPVGPGRGSGAGSLVAYSLKITDLDPLRYDLLFERFLNPERVSMPDFDV 399
D+I++A+ +G+PVGPGRGS AGSLVAY +KIT++DP+ + L+FERFLNPER SMPD D
Sbjct 351 WDYIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDT 410
Query 400 DFCIAGRDRVIDYVSRTYGREAVSQIATFGTMAAKGAIRDVARVLGKSYGLADRISKMVP 459
DFCI RD +I+YV++ YG + V+QI TF M +K ++DVARVL Y +D+++KM+P
Sbjct 411 DFCIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIP 470
Query 460 T---KPLGVDLKQAIEM-EPQLKDIVTNPSNPDNDDAAEIW-EMALKLEGITRNTGKHAG 514
KP + + + + EPQ K + DN+ + W +MA+++EG + G HA
Sbjct 471 VSRGKPAKLKVMISDQTPEPQFK------ARYDNEPWVKKWIDMAIRIEGTNKTFGVHAA 524
Query 515 GVVIAPGKITDYSAVLCDADGTNRVAQYDKDDVEAAGLVKFDFLGLRNLTVIEDAVQNIN 574
GVVI+ + + + DG + QY +DVEA GL+K DFLGL+NLT ++ AV+ +
Sbjct 525 GVVISSEPLDQIVPLQKNNDGA-VITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVA 583
Query 575 KRIQSEIPLDIANVPLDDKDAYLVFA---------DANTT----------AVFQFESVGM 615
+ I LD+ ++PL ++ A + A D T +FQ ES GM
Sbjct 584 E--TKGIELDLDDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGM 641
Query 616 KKMLKEARPSKFEEIIAFVSLYRPGPMD--LIPDFIHRMHG-GEFEYLHPLLESVLEPTY 672
K+++++ +PS E+I + ++LYRPGP+D LIP FI+R HG E Y H LLE +L TY
Sbjct 642 KQIVRDLKPSGIEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETY 701
Query 673 GIMVYQEQVMQAAQFCAGYTLGGADLLRRAMGKKKPEEMVKQRQIFIKGAAEKEIDEATA 732
G++VYQEQ+M+ AQ A Y+LG ADLLRRAMGKKK EEM K R F+ G+ + + A
Sbjct 702 GVLVYQEQIMKMAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIA 761
Query 733 NHIFDYMEKFAGY 745
++FD M KFA Y
Sbjct 762 ENLFDQMVKFAEY 774
Score = 151 bits (382), Expect = 1e-39
Identities = 111/416 (27%), Positives = 204/416 (49%), Gaps = 36/416 (9%)
Query 747 FNKSHAAAYALVAYHTAWLKAHYPAEFMAAVLSSEMQNTDSIVFLIDDCRNNALEVLPPS 806
FNKSH+ AYA V Y TA+LKA+YP E+MAA+L++ + + + ++C+ + V PP
Sbjct 935 FNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITVEPPD 994
Query 807 VNMSLYHFHASDERTIVYGLGAIKGVGEQAMQSVIDSR--IKNGPYTDLFDFCHRIDLKK 864
+N S HF E I++GL A++ +GE A++ +I +R + + L DFC ++DL+
Sbjct 995 INRSQRHFTPLGE-AILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQVDLRV 1053
Query 865 INKRTLEALIRAGALDCLQIERSSLMAQLPEAVQAAEQARQNRETGIMDLFGEV---EEV 921
+N+R +E LI AGA D +Q R+ L+ L + A++ + +ETG +++F + E +
Sbjct 1054 VNRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIFDSLTAGESI 1113
Query 922 QRK-----------PAKPVKPWSDEVRLKGEKDTLGLYLTGHPIDVYRPELKSFIPAKLN 970
+ K A PV +S + +L+ EK+ LG Y++ HP+ + + P L
Sbjct 1114 KAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRSARLLSPINLV 1173
Query 971 EVT--PTRRGVTT----VFAGLVLDVANFPNRMVITLDDGTARIEVSCNHERFQRFKDIV 1024
++ R+ V+ V ++ N +TL+D + + E ++R +D++
Sbjct 1174 DLDQYKVRQKVSAVAILVAVKKIITKKNGQPMAFLTLEDMSGQSEAVVFPSNYERLQDVL 1233
Query 1025 VVEQVVVIEGEIYEREGFDRPMARLSKAFSLNEIRQKRANHIRIQPAEEQISKTLAHDLQ 1084
+ +I G++ R+ + + L + + + + + P E + T A L+
Sbjct 1234 IEGSQQMIWGKVDRRDDQYQLIVE-----DLEPVEEVKMVMLDLTPQEIANTSTQAR-LK 1287
Query 1085 NIILPFCNVDMCQHIPVMLTLEQPYATAEVHLGQNW-------KVAPLDELLIKLR 1133
I+ IPV+ + + + G+N+ VA L EL + R
Sbjct 1288 QILQSHAPQKEQMKIPVVACINEGPTKHFIRFGENYWVNDYGTAVASLQELGFRAR 1343
Score = 22.3 bits (46), Expect = 4.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query 887 SSLMAQLPEAVQAAEQARQNRETGIMDLFGEVEEVQRKPAKPVKP 931
S L A + A++ A + G+M +G VE ++ KP+KP
Sbjct 19 SQLPALIDRAIELGMPAIALTDHGVM--YGAVELLKVCRGKPIKP 61
Lambda K H a alpha
0.321 0.137 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 21440246
Database: 1948411a7be46f89000c1e659c0c5ff8.SwissProt.fasta
Posted date: May 20, 2024 3:01 AM
Number of letters in database: 20,265
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
