BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: fd889118b1b1735fe8255f0fc7670314.SwissProt.fasta
2 sequences; 586 total letters
Query= ACIAD2115
Length=44
Score E
Sequences producing significant alignments: (Bits) Value
D0ZXP9 Aromatic amino acid exporter YddG [Salmonella typhimurium ... 37.0 4e-09
P46136 Aromatic amino acid exporter YddG [Escherichia coli (strai... 34.7 3e-08
>D0ZXP9 Aromatic amino acid exporter YddG [Salmonella typhimurium
(strain 14028s / SGSC 2262)]
Length=293
Score = 37.0 bits (84), Expect = 4e-09
Identities = 19/33 (58%), Positives = 24/33 (73%), Gaps = 0/33 (0%)
Query 8 MSSKKATLMGLTAICLRSMIVALIKEVSRDFGP 40
M+S+KATL+GL AI L S +V LI+ VS GP
Sbjct 1 MTSQKATLIGLVAIVLWSTMVGLIRGVSEGLGP 33
>P46136 Aromatic amino acid exporter YddG [Escherichia coli (strain
K12)]
Length=293
Score = 34.7 bits (78), Expect = 3e-08
Identities = 18/33 (55%), Positives = 23/33 (70%), Gaps = 0/33 (0%)
Query 8 MSSKKATLMGLTAICLRSMIVALIKEVSRDFGP 40
M+ +KATL+GL AI L S +V LI+ VS GP
Sbjct 1 MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGP 33
Lambda K H a alpha
0.341 0.145 0.456 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 16124
Database: fd889118b1b1735fe8255f0fc7670314.SwissProt.fasta
Posted date: May 20, 2024 1:28 AM
Number of letters in database: 586
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40