BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 4d6aba9c338bb232d380f8cc3c51468a.SwissProt.fasta
           2 sequences; 1,104 total letters



Query= ACIAD2135

Length=84
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q06065 Regulatory protein AtoC [Escherichia coli (strain K12)]        32.7    1e-06
B0R5T0 Transducer protein Htr8 [Halobacterium salinarum (strain A...  31.6    3e-06


>Q06065 Regulatory protein AtoC [Escherichia coli (strain K12)]
Length=461

 Score = 32.7 bits (73),  Expect = 1e-06
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query  9    IAVLEADLKHMIEIMSYASDVAEQLNVMCKIIEEKADKHGDIKKLAH--VARCHAENWAN  66
            IA    DL+ M++  ++  D+  +LNV+  I+    D+  DI  LA+  + +  +EN  +
Sbjct  282  IAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD  341

Query  67   VFDVD  71
            + D+D
Sbjct  342  IIDID  346


>B0R5T0 Transducer protein Htr8 [Halobacterium salinarum (strain 
ATCC 29341 / DSM 671 / R1)]
Length=643

 Score = 31.6 bits (70),  Expect = 3e-06
 Identities = 26/77 (34%), Positives = 37/77 (48%), Gaps = 12/77 (16%)

Query  9    IAVLEADLKHMIEIMSYASDVAEQLNVM---CKIIEEKADKHGD--------IKKLAHVA  57
            +  L+  L  + EI+   SDVAEQ N++     I   +ADK GD        +K LA   
Sbjct  437  VEALDDQLAEISEIVDLISDVAEQTNMLALNANIEAARADKSGDGFAVVADEVKDLAEET  496

Query  58   RCHA-ENWANVFDVDRE  73
            R  A +  A V D+D +
Sbjct  497  RASAGDIEALVADIDAQ  513



Lambda      K        H        a         alpha
   0.326    0.137    0.412    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 62186


  Database: 4d6aba9c338bb232d380f8cc3c51468a.SwissProt.fasta
    Posted date:  May 9, 2024  10:36 AM
  Number of letters in database: 1,104
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40