BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 1736923e02913f336533e94725646552.SwissProt.fasta
           1 sequences; 160 total letters



Query= ACIAD2136

Length=107
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

B4S9B2 Transcription elongation factor GreA [Prosthecochloris aes...  32.3    3e-07


>B4S9B2 Transcription elongation factor GreA [Prosthecochloris 
aestuarii (strain DSM 271 / SK 413)]
Length=160

 Score = 32.3 bits (72),  Expect = 3e-07
 Identities = 18/59 (31%), Positives = 34/59 (58%), Gaps = 3/59 (5%)

Query  2    NSMTQLQNNINFTALLSFEEIQAYETDEVGIMRRMTLATLTRSFDELLESTLQSEQEAE  60
            + +  L+N +   ++L  ++I+   TD V I+  + L  L  + DE++E TL S +EA+
Sbjct  61   SKIVDLENKLTRASILDPKQIR---TDRVYILTSVKLRNLDETDDEIIEYTLVSSEEAD  116



Lambda      K        H        a         alpha
   0.321    0.132    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 13578


  Database: 1736923e02913f336533e94725646552.SwissProt.fasta
    Posted date:  May 9, 2024  6:18 PM
  Number of letters in database: 160
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40