BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c2e49f75e1fcc1f6418b2ee59f2505ad.SwissProt.fasta
2 sequences; 1,868 total letters
Query= ACIAD2152
Length=544
Score E
Sequences producing significant alignments: (Bits) Value
Q54IV3 Probable ATP-dependent RNA helicase ddx42 [Dictyostelium d... 38.1 2e-06
P50090 Kelch repeat-containing protein 2 [Saccharomyces cerevisia... 36.2 8e-06
>Q54IV3 Probable ATP-dependent RNA helicase ddx42 [Dictyostelium
discoideum]
Length=986
Score = 38.1 bits (87), Expect = 2e-06
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 9/208 (4%)
Query 139 FVGSLNGMFSNNRKIRYDLTKWNVNP--VTNMQATFFNNIKFNQEIGSWDVSNTNVFRQC 196
F + +G ++ I Y +N N N + FNN N + + +N
Sbjct 776 FSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNSNNGYSNNNYNNNYKNNSN 835
Query 197 FSGATSFNKPLLNWNVSKSISFYGMFAGSTSFNQDIGSWNVATATDFTAMFMNATSFNKP 256
++ + + N N N S + + S + N + ++ + + N +N
Sbjct 836 YNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRNGNNNN---NYNNNNYYNNN 892
Query 257 LSNWNMSKAFLTTNMFRGATSFNQDIGSWNVSNVSNMTNMFDSALVFNQDLNNWNVSNVN 316
SN N S N +S N ++N +N +N + F+ AL FN NN N SN N
Sbjct 893 NSNNNSSN----NNNSNNNSSNNNFNNNFNNNNNNNDNSNFNRALPFNDFNNNNNNSNNN 948
Query 317 DFTGMFKNAKSFNKPVSNWNMSKATSIN 344
+F S+N SN + S N
Sbjct 949 NFNYNNNFNNSYNANNSNHYKNNNNSNN 976
Score = 37.0 bits (84), Expect = 5e-06
Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 16/231 (7%)
Query 254 NKPLSNWNMSKAFLTTNMFRGATS-FNQDIGSWNVSNVSNMTNMFDSALVFNQDLNNWNV 312
N ++N N K+ N F S + D S N N S N ++ N + NN N
Sbjct 759 NSEINNEN-EKSINNENKFSNNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSNS 817
Query 313 SNV---NDFTGMFKNAKSFNKPVSN----WNMSKATSINGIFYGATLFDQDVNTWNLSSC 365
+N N++ +KN ++N +N +N + + + N Y + + + N N +
Sbjct 818 NNGYSNNNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNYRNG 877
Query 366 TSFGSVFRETSFNKSLSNWDVSKGTEFGGVFWLNSKFNQPLSMWNVSSATNMPYMFQQAT 425
+ + +N + SN + S NS N + +N ++ N F +A
Sbjct 878 NNNNNYNNNNYYNNNNSNNNSSNNNNSNN----NSSNNNFNNNFNNNNNNNDNSNFNRAL 933
Query 426 AFNQDISNWNISKVTDMSNMFNGATSYNQDLSVWCAKFNINVNLANFLDNS 476
FN +N N S + + N SYN + S + N N NF S
Sbjct 934 PFNDFNNNNNNSNNNNFNYNNNFNNSYNANNS---NHYKNNNNSNNFNQRS 981
Score = 30.0 bits (66), Expect = 7e-04
Identities = 48/213 (23%), Positives = 90/213 (42%), Gaps = 17/213 (8%)
Query 174 NNIKFNQEIGSWDVSNTNVFRQCFSGATSFNKPLLNW--NVSKSISFYGMFAGSTSFNQD 231
+N + N E ++N N F SG+++ ++ +N+ N + S +G+++FN
Sbjct 758 DNSEINNE-NEKSINNENKFSNNNSGSSN-DRNSINYRNNSFNNNSNNTNNSGNSNFNNS 815
Query 232 IGSWNVATATDFTAMFMNATSFNKPLSN----WNMSKAFLTTNMFRGATSFNQDIGSWNV 287
S N + ++ + N +++N +N +N + + N +S N + + N
Sbjct 816 -NSNNGYSNNNYNNNYKNNSNYNNSNNNNNSYYNNNNSNNNNNSNYNNSSNNNNNNNNNY 874
Query 288 SNVSNMTNMFDSALVFNQDLNNWNVSNVNDFTGMFKNAKSFNKPVSNWNMSKATSINGIF 347
N +N N + N NN N +N + N S N +N+N + + N F
Sbjct 875 RNGNNNNNYNN-----NNYYNNNNSNNNSSNNNNSNNNSSNNNFNNNFNNNNNNNDNSNF 929
Query 348 YGATLFDQDVNTWNLSSCTSFGSVFRETSFNKS 380
A F+ N N S+ +F +FN S
Sbjct 930 NRALPFNDFNNNNNNSNNNNFN---YNNNFNNS 959
Score = 24.3 bits (51), Expect = 0.041
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 13/112 (12%)
Query 373 RETSFNKSLSNWDVSKGTEFGGVFWLNSKFNQPLSMWNVSSATNMPYMFQQATAFNQDIS 432
R++S + S + + ++ E G +F N+ N ++ N S N S
Sbjct 729 RDSSRSDSQNKFIPAQSVEGGRLFNPNNTDNSEINNENEKSINN-----------ENKFS 777
Query 433 NWNISKVTDMSNMFNGATSYNQDLSVWCAKFNINVNLANFLDNSGISAANYS 484
N N D +++ S+N + + N N N +N N+G S NY+
Sbjct 778 NNNSGSSNDRNSINYRNNSFNNNSNNTNNSGNSNFNNSN--SNNGYSNNNYN 827
Score = 20.8 bits (42), Expect = 0.48
Identities = 43/174 (25%), Positives = 70/174 (40%), Gaps = 30/174 (17%)
Query 303 FNQDLNNWNVSNVNDFTGMFKNAKSFNKPVSNWNMSKATSINGIFYGATLFDQDVNTWNL 362
F+ ++NN N SN N+ N + N +N N +K N I G L ++ N N
Sbjct 27 FSSNINNNNNSNNNN------NNNNNNNNNNNNNNNK----NNIGTGINLNIKNNNNINN 76
Query 363 SSCTSFGSVFRETSFNKSLSNWDVSKGTEFGGVFWLNSKFNQPLSMWNVSSATNMPYMFQ 422
++ S G +++ FN + D F+ N ++ N S P F+
Sbjct 77 NNNKS-GFPVKKSRFNGEDDDDDY---------FFSNVPPKSSMTTLNKS-----PPNFE 121
Query 423 QATAFNQDISNWNISKVTDMSNMFNGATSYNQDLSVWCAKFNINVNLANFLDNS 476
A++ N + +N N ++ +D N L F NVN +DNS
Sbjct 122 NASSNNNNNNN-NNNQESDSKNQNEDEDDEIDPLDA----FMENVNAQAAIDNS 170
Score = 20.8 bits (42), Expect = 0.48
Identities = 19/74 (26%), Positives = 31/74 (42%), Gaps = 5/74 (7%)
Query 144 NGMFSNNRKIRYDLTKWNVNPVTNMQATFFNNIKFNQEIGSWDVSNTNVFRQCFSGATSF 203
N + +NN K + + K N + FF+N+ + + + S N F A+S
Sbjct 72 NNINNNNNKSGFPVKKSRFNGEDDDDDYFFSNVPPKSSMTTLNKSPPN-----FENASSN 126
Query 204 NKPLLNWNVSKSIS 217
N N N +S S
Sbjct 127 NNNNNNNNNQESDS 140
Score = 17.3 bits (33), Expect = 5.6
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 0/47 (0%)
Query 144 NGMFSNNRKIRYDLTKWNVNPVTNMQATFFNNIKFNQEIGSWDVSNT 190
N +NN + K N+ N+ NNI N + V +
Sbjct 42 NNNNNNNNNNNNNNNKNNIGTGINLNIKNNNNINNNNNKSGFPVKKS 88
Score = 17.3 bits (33), Expect = 5.6
Identities = 8/33 (24%), Positives = 19/33 (58%), Gaps = 2/33 (6%)
Query 174 NNIKFNQEI-GSWDVSNTNVFRQCFSGATSFNK 205
NN +N S++ +N+N ++ + + +FN+
Sbjct 948 NNFNYNNNFNNSYNANNSNHYKN-NNNSNNFNQ 979
Score = 16.5 bits (31), Expect = 9.6
Identities = 10/39 (26%), Positives = 20/39 (51%), Gaps = 0/39 (0%)
Query 279 NQDIGSWNVSNVSNMTNMFDSALVFNQDLNNWNVSNVND 317
N + + N +N +N N + + +LN N +N+N+
Sbjct 38 NNNNNNNNNNNNNNNNNNNKNNIGTGINLNIKNNNNINN 76
>P50090 Kelch repeat-containing protein 2 [Saccharomyces cerevisiae
(strain ATCC 204508 / S288c)]
Length=882
Score = 36.2 bits (82), Expect = 8e-06
Identities = 28/88 (32%), Positives = 41/88 (47%), Gaps = 7/88 (8%)
Query 37 RKTGFWMHGTTVIASHPLKIVGGKFTGL-LSAGVIQNTVPNVIPVIDSTTVTLPNSTWIY 95
R G + H ++IAS+P++ T L L G + T N + V D ++ PNS W +
Sbjct 193 RPLGRYGHKISIIASNPMQ------TKLYLFGGQVDETYFNDLVVFDLSSFRRPNSHWEF 246
Query 96 LEVTVDDNKPFAFITMEYFVGDICVAGG 123
LE D P TM + + V GG
Sbjct 247 LEPVGDLPPPLTNHTMVAYDNKLWVFGG 274
Score = 18.5 bits (36), Expect = 2.5
Identities = 6/17 (35%), Positives = 9/17 (53%), Gaps = 0/17 (0%)
Query 254 NKPLSNWNMSKAFLTTN 270
N P + S +F+ TN
Sbjct 80 NSPFPRYRHSSSFIVTN 96
Score = 17.3 bits (33), Expect = 5.6
Identities = 5/10 (50%), Positives = 8/10 (80%), Gaps = 0/10 (0%)
Query 251 TSFNKPLSNW 260
+SF +P S+W
Sbjct 235 SSFRRPNSHW 244
Score = 17.3 bits (33), Expect = 5.6
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 0/20 (0%)
Query 437 SKVTDMSNMFNGATSYNQDL 456
SKV +++ GA SY+ L
Sbjct 461 SKVLSYNDIDEGAGSYSSAL 480
Score = 16.9 bits (32), Expect = 7.3
Identities = 6/15 (40%), Positives = 10/15 (67%), Gaps = 0/15 (0%)
Query 371 VFRETSFNKSLSNWD 385
VF +SF + S+W+
Sbjct 231 VFDLSSFRRPNSHWE 245
Lambda K H a alpha
0.318 0.129 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 890000
Database: c2e49f75e1fcc1f6418b2ee59f2505ad.SwissProt.fasta
Posted date: May 9, 2024 3:20 PM
Number of letters in database: 1,868
Number of sequences in database: 2
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
