BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 797d28776f35a06517168d48a3cd064f.SwissProt.fasta
13 sequences; 2,028 total letters
Query= ACIAD2181
Length=110
Score E
Sequences producing significant alignments: (Bits) Value
P37371 Uncharacterized HTH-type transcriptional regulator Synpcc7... 69.3 7e-21
Q46561 Virulence-associated protein A' [Dichelobacter nodosus] 59.7 1e-16
Q57475 Virulence-associated protein A [Dichelobacter nodosus] 58.9 2e-16
P67699 Uncharacterized HTH-type transcriptional regulator YddM [E... 53.1 3e-14
P67700 Uncharacterized HTH-type transcriptional regulator YddM [E... 53.1 3e-14
Q46560 Virulence-associated protein I [Dichelobacter nodosus] 51.2 2e-13
Q57089 Uncharacterized HTH-type transcriptional regulator HI_1251... 50.8 3e-13
Q7A224 Antitoxin HigA [Proteus vulgaris] 50.4 4e-13
Q9KMG4 Antitoxin HigA-1 [Vibrio cholerae serotype O1 (strain ATCC... 45.4 3e-11
O59472 Putative HTH-type transcriptional regulatory protein PH180... 37.0 1e-07
Q9V1R0 Putative HTH-type transcriptional regulatory protein PYRAB... 36.6 2e-07
P41030 HTH-type transcriptional regulator GalS [Salmonella typhim... 33.9 2e-06
Q97QZ2 Antitoxin PezA [Streptococcus pneumoniae serotype 4 (strai... 32.3 4e-06
>P37371 Uncharacterized HTH-type transcriptional regulator Synpcc7942_2319
[Synechococcus elongatus (strain ATCC 33912 / PCC
7942 / FACHB-805)]
Length=70
Score = 69.3 bits (168), Expect = 7e-21
Identities = 35/67 (52%), Positives = 46/67 (69%), Gaps = 0/67 (0%)
Query 4 MFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWLG 63
M NPPHPGE ++E L +++TEAA LGVSR TLS +LNG + ISPEMA+R++ L
Sbjct 3 MHNPPHPGEIIKELCLEPLGISITEAAAALGVSRKTLSAILNGHAGISPEMAIRLDSPLP 62
Query 64 VENGGRA 70
+ RA
Sbjct 63 LTPRQRA 69
>Q46561 Virulence-associated protein A' [Dichelobacter nodosus]
Length=115
Score = 59.7 bits (143), Expect = 1e-16
Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 10/100 (10%)
Query 3 QMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWL 62
+M NPPHPG ++ D L + +TEAA L V+R LS ++NG IS +MA ++ +
Sbjct 5 RMKNPPHPGLLIKSD-LDGLGINITEAAKALDVTRAALSEIINGKRGISAKMAWKLSK-- 61
Query 63 GVENGGRADLWLGMQTSYDLWKARE------RVHQQPLSV 96
+ WL +Q YDL + E RV QP S+
Sbjct 62 -AFTNSDPEFWLALQAKYDLSQVGEQCADKVRVLWQPSSL 100
>Q57475 Virulence-associated protein A [Dichelobacter nodosus]
Length=102
Score = 58.9 bits (141), Expect = 2e-16
Identities = 32/82 (39%), Positives = 45/82 (55%), Gaps = 3/82 (4%)
Query 1 MGQMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEE 60
M +M NPPHPG L+ L L +TE A +L + R LS ++N AISPE+A+++E+
Sbjct 1 MAKMKNPPHPGLMLKVMYLEPLGLNITETAEKLDMPRSALSEIVNAKRAISPEVAVKLEK 60
Query 61 WLGVENGGRADLWLGMQTSYDL 82
+ A WL Q Y L
Sbjct 61 AFPKHS---ASFWLRAQAGYAL 79
>P67699 Uncharacterized HTH-type transcriptional regulator YddM
[Escherichia coli (strain K12)]
Length=94
Score = 53.1 bits (126), Expect = 3e-14
Identities = 29/87 (33%), Positives = 51/87 (59%), Gaps = 5/87 (6%)
Query 3 QMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWL 62
+M N P PG+ ++E L N+++ E A + ++ T SR+L G +A++PEMA++ L
Sbjct 2 KMANHPRPGDIIQES-LDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIK----L 56
Query 63 GVENGGRADLWLGMQTSYDLWKARERV 89
V G +WL +Q ++ L +A + V
Sbjct 57 SVVIGSSPQMWLNLQNAWSLAEAEKTV 83
>P67700 Uncharacterized HTH-type transcriptional regulator YddM
[Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=94
Score = 53.1 bits (126), Expect = 3e-14
Identities = 29/87 (33%), Positives = 51/87 (59%), Gaps = 5/87 (6%)
Query 3 QMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWL 62
+M N P PG+ ++E L N+++ E A + ++ T SR+L G +A++PEMA++ L
Sbjct 2 KMANHPRPGDIIQES-LDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIK----L 56
Query 63 GVENGGRADLWLGMQTSYDLWKARERV 89
V G +WL +Q ++ L +A + V
Sbjct 57 SVVIGSSPQMWLNLQNAWSLAEAEKTV 83
>Q46560 Virulence-associated protein I [Dichelobacter nodosus]
Length=108
Score = 51.2 bits (121), Expect = 2e-13
Identities = 29/79 (37%), Positives = 41/79 (52%), Gaps = 4/79 (5%)
Query 9 HPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWLGVENGG 68
HPGE LRE+ L L+ A L VS ++ ++ I+ + ALR+ + GG
Sbjct 14 HPGEILREEYLKPMGLSAHALAKALHVSPSRINEIVREQRGITADTALRLVRYF----GG 69
Query 69 RADLWLGMQTSYDLWKARE 87
A WL MQT+YDL A +
Sbjct 70 DAQSWLNMQTAYDLKMAEQ 88
>Q57089 Uncharacterized HTH-type transcriptional regulator HI_1251
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=107
Score = 50.8 bits (120), Expect = 3e-13
Identities = 30/98 (31%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query 7 PPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWLGVEN 66
P GE L+E+ L +L +++ A L V R T S ++N +S I+ EMA+++ +
Sbjct 6 PTSVGEILQEEFLEPLSLKISDLAQILDVHRNTASNIVNNSSRITLEMAVKLAKVFDTT- 64
Query 67 GGRADLWLGMQTSYDLW--KARERVHQQPLSVRSVKHK 102
+ WL +QT DLW + +R Q +V+ H+
Sbjct 65 ---PEFWLNLQTRIDLWDLEHNKRFQQSLANVKPALHR 99
>Q7A224 Antitoxin HigA [Proteus vulgaris]
Length=104
Score = 50.4 bits (119), Expect = 4e-13
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 5/87 (6%)
Query 3 QMFNPPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWL 62
+ F HPGE + D L ++ A+ +GV+ T+SR+L G +A++P +++RI L
Sbjct 2 RQFKVSHPGEMIARD-LEDMGVSGRRFAHNIGVTPATVSRLLAGKTALTPSLSIRIAAAL 60
Query 63 GVENGGRADLWLGMQTSYDLWKARERV 89
G + WL +Q++YDL + ++
Sbjct 61 ----GSTPEFWLRLQSNYDLRQLENQI 83
>Q9KMG4 Antitoxin HigA-1 [Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961)]
Length=105
Score = 45.4 bits (106), Expect = 3e-11
Identities = 27/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query 7 PPHPGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEEWLGVEN 66
P GE L+ + L +T A +GV R T+S ++NG +P +A+++ L
Sbjct 8 PVSVGEMLKVEFLEPMGITSKALAEAMGVHRNTVSNLINGGVLTAP-VAIKLAAAL---- 62
Query 67 GGRADLWLGMQTSYDLWKARERVHQQPLSVR 97
G + WL +Q + DLW R R ++ V+
Sbjct 63 GNTPEFWLNIQHAVDLWDTRNRYQEEAKFVK 93
>O59472 Putative HTH-type transcriptional regulatory protein PH1808
[Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3)]
Length=315
Score = 37.0 bits (84), Expect = 1e-07
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 0/36 (0%)
Query 25 TVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEE 60
++TE A LG+SR +L R G S +S E+ALR+EE
Sbjct 141 SITELAGILGISRKSLQRYEKGESVVSLEVALRLEE 176
>Q9V1R0 Putative HTH-type transcriptional regulatory protein PYRAB03670
[Pyrococcus abyssi (strain GE5 / Orsay)]
Length=316
Score = 36.6 bits (83), Expect = 2e-07
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 0/45 (0%)
Query 16 EDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAISPEMALRIEE 60
+D+ +++E AN LGVSR +L R G S ++ E+ALR+EE
Sbjct 132 KDLREKHGYSLSELANILGVSRKSLQRYEKGDSMVTLEVALRLEE 176
>P41030 HTH-type transcriptional regulator GalS [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=340
Score = 33.9 bits (76), Expect = 2e-06
Identities = 14/30 (47%), Positives = 22/30 (73%), Gaps = 0/30 (0%)
Query 24 LTVTEAANQLGVSRVTLSRVLNGTSAISPE 53
+T+ + A Q GVS T+SRVLN ++ +SP+
Sbjct 2 ITIRDVARQAGVSVATVSRVLNNSALVSPD 31
Score = 18.9 bits (37), Expect = 0.25
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 11/80 (14%)
Query 10 PGETLREDVLPAFNLTVTEAANQLGVSRVTLSRVLNGTSAIS--------PEMALRIEEW 61
PG L ++P + N G T + NG I + A+R E W
Sbjct 139 PGMVLINRIVPGYAHRCVCLDNVSGARMATRMLLNNGHQRIGYLASSHRIEDDAMRREGW 198
Query 62 LGV--ENG-GRADLWLGMQT 78
L E G ++ W+G T
Sbjct 199 LHALQEQGIAASESWIGTGT 218
>Q97QZ2 Antitoxin PezA [Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4)]
Length=158
Score = 32.3 bits (72), Expect = 4e-06
Identities = 16/32 (50%), Positives = 23/32 (72%), Gaps = 0/32 (0%)
Query 23 NLTVTEAANQLGVSRVTLSRVLNGTSAISPEM 54
+LT E A +G+SR +LSR NGTS++S E+
Sbjct 14 DLTQLEFARIVGISRNSLSRYENGTSSVSTEL 45
Lambda K H a alpha
0.321 0.134 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 131040
Database: 797d28776f35a06517168d48a3cd064f.SwissProt.fasta
Posted date: May 19, 2024 10:15 PM
Number of letters in database: 2,028
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
