BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: c0a970bcc461ef61da9955ad46e00678.SwissProt.fasta
           1 sequences; 607 total letters



Query= ACIAD2208

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9HUK7 Cyclic-di-GMP receptor FimW [Pseudomonas aeruginosa (strai...  176     4e-52


>Q9HUK7 Cyclic-di-GMP receptor FimW [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 
12228 / 1C / PRS 101 / PAO1)]
Length=607

 Score = 176 bits (445),  Expect = 4e-52
 Identities = 141/571 (25%), Positives = 243/571 (43%), Gaps = 55/571 (10%)

Query  17   RKELSFAHTNTQSMTEWVQSLSLLQLGDTAQALFEALIEISELECSETLRFDLLQILQPQ  76
            ++ LSF     + +  W+  L    LG+TA+ L++ LIE+++L      R  LL++ +P+
Sbjct  17   QQNLSFCDATPKDIKYWLAHLPKANLGETARQLYQGLIELNQLVLPVEARLQLLELFRPE  76

Query  77   FEHVLRHLEEHFFNQGLIHSDRNEHIIELAFQLRTYFAHAYIIIVKCSAEQLRQQKFSLF  136
               V  HLE HF NQ ++  +R   I  L   L+ + A  Y +IV   A +  + +  LF
Sbjct  77   VHFVCAHLERHFLNQAIVLDERPRKIANLCQALQNHLAIGYKLIVVQEAPRNSRDRAQLF  136

Query  137  RFHHKKNLKVAQTLAIYYAMQQFTQLLYQQHMLYSQPVYGQWQRIHWLFDIAQKNRIEHQ  196
                         + I  A++     L +   LY     G W  +H L+ +A +  +   
Sbjct  137  ------------AVGIQRAIRSLCGPLIRASQLYCPVPEGLWLELHQLYQLASQRGVHRL  184

Query  197  NINQLQGVHYTLKNISLLYQQLILLHILNTNQIRQSEIRALYQCSFEWAKLLDIEFKETQ  256
             +      H    ++   Y   +LL     NQ+RQ+ I  L +    W++LL I+     
Sbjct  185  AVRDELAKHTPGLSVEQAYLIPLLLGCARCNQMRQNNIARLAEVLEPWSQLLSIQSATLP  244

Query  257  TSKYVIDKKIDQAPTYNKKQYP--HLDPDFFISTQPLLEHITATLHKTDDYLSPVER---  311
             S ++   +ID  P Y +  YP   L     I TQPL+E I   L + +   +       
Sbjct  245  GSLFIAVPQIDGPPRY-RSLYPETQLASALGIDTQPLVELIREYLLQPEAERAKARLPLI  303

Query  312  QYLTPALKFHVQNILGSIGERRHERFESSGQLHICFGITTAHYYISRHKNFTDSLPHSEL  371
            + +T  L  H+ +  G I ER  +R +  GQL +C G++  HY+++  + F + L   E 
Sbjct  304  EGVTLDLLQHLSSAWGDIAERTFQRTQGQGQLTLCIGMSALHYFLAGRRPFNEVLQIQEA  363

Query  372  S----------------------------------SFYETQDRIKVDSSFFQASARL-SR  396
                                                +   Q    V     QA A+  + 
Sbjct  364  PEAPRFKADVQDAWAGAFDAQKVTDWQPGMPLEEIEYRPHQSPRSVQPGHPQAHAQADAT  423

Query  397  EAKRIYQSHILDMSVSGYRIKWSDEVPKNLKTGEFILVKEGTHSSWRGGVIRWIKQSSEK  456
            E    Y   I++ S  GY + W  EVP  L+ GE + +++    +W   V+RWI+Q    
Sbjct  424  EDYPTYALPIVNHSPGGYCLSWPKEVPAQLQAGELVGLQDLPGQAWSIAVVRWIRQVRNG  483

Query  457  NLEMGLEILSKNILPCTLLIQEVSNQQIPVLQPGLLLQSLHLDHGHMSLVSPNITSHEQQ  516
              +MG+E+++    PC L +   + Q    L+  LLL ++       ++++P +   E  
Sbjct  484  GTQMGIEMIAPAAQPCGLQLLRKTEQSSHYLR-ALLLPAIAAISRPATVITPRLPFQEGS  542

Query  517  QSISIYVDQQKFELYLLKTQLITQSFIQFEF  547
            + + I +  ++    L + Q  T SF QFE+
Sbjct  543  R-VQINLHGEERRAVLNRRQASTGSFSQFEY  572



Lambda      K        H        a         alpha
   0.323    0.135    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 303810


  Database: c0a970bcc461ef61da9955ad46e00678.SwissProt.fasta
    Posted date:  May 19, 2024  7:01 PM
  Number of letters in database: 607
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40