BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e45a50fdac90b6773641bef845fd005e.SwissProt.fasta
4 sequences; 511 total letters
Query= ACIAD2240
Length=127
Score E
Sequences producing significant alignments: (Bits) Value
P0ADU5 Protein YgiW [Escherichia coli (strain K12)] 63.5 2e-18
P0ADU6 Protein YgiW [Escherichia coli O157:H7] 63.5 2e-18
P44293 Uncharacterized protein HI_1709 [Haemophilus influenzae (s... 50.1 3e-13
P31130 Uncharacterized protein YdeI [Escherichia coli (strain K12)] 48.9 1e-12
>P0ADU5 Protein YgiW [Escherichia coli (strain K12)]
Length=130
Score = 63.5 bits (153), Expect = 2e-18
Identities = 35/88 (40%), Positives = 54/88 (61%), Gaps = 4/88 (5%)
Query 39 PTTSVS-VKDALTFKDNTPVKLQGQVVKSLGDEKYQFRDKTGVITVDIDDELWQGRPVSP 97
P SV+ V+ A + +D+T V L+G +V+ + D+ Y F+D +G I VDID + W G V+P
Sbjct 42 PNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTP 101
Query 98 TTYITLIGEVDIDYKPMKRVEIEADQIQ 125
+ + GEVD D+ VEI+ QI+
Sbjct 102 KDTVEIQGEVDKDW---NSVEIDVKQIR 126
>P0ADU6 Protein YgiW [Escherichia coli O157:H7]
Length=130
Score = 63.5 bits (153), Expect = 2e-18
Identities = 35/88 (40%), Positives = 54/88 (61%), Gaps = 4/88 (5%)
Query 39 PTTSVS-VKDALTFKDNTPVKLQGQVVKSLGDEKYQFRDKTGVITVDIDDELWQGRPVSP 97
P SV+ V+ A + +D+T V L+G +V+ + D+ Y F+D +G I VDID + W G V+P
Sbjct 42 PNGSVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTP 101
Query 98 TTYITLIGEVDIDYKPMKRVEIEADQIQ 125
+ + GEVD D+ VEI+ QI+
Sbjct 102 KDTVEIQGEVDKDW---NSVEIDVKQIR 126
>P44293 Uncharacterized protein HI_1709 [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=121
Score = 50.1 bits (118), Expect = 3e-13
Identities = 29/101 (29%), Positives = 51/101 (50%), Gaps = 2/101 (2%)
Query 8 AMRRLAALVLTSGLTITGLSYAQPVNQSALIPTTSVSVKDALTFKDNTPVKLQGQVVKSL 67
A+ + AL TS + +Q Q A ++SVK AL+ DN+ + L G + + +
Sbjct 5 ALATIFALATTSAFAGFNGNNSQGGFQQAA--PAAISVKQALSAADNSMITLVGNITQQI 62
Query 68 GDEKYQFRDKTGVITVDIDDELWQGRPVSPTTYITLIGEVD 108
D+++ F D TG I ++I +W G V + + G++D
Sbjct 63 DDDEFWFTDGTGQIKIEIKKRVWNGLNVDSKDKVKIYGKLD 103
>P31130 Uncharacterized protein YdeI [Escherichia coli (strain
K12)]
Length=130
Score = 48.9 bits (115), Expect = 1e-12
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 0/66 (0%)
Query 43 VSVKDALTFKDNTPVKLQGQVVKSLGDEKYQFRDKTGVITVDIDDELWQGRPVSPTTYIT 102
++V A T D V L+G ++ G+++Y FRDK+G I V I ++ GR V P I
Sbjct 50 MTVDFAKTMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREVQPDQMIN 109
Query 103 LIGEVD 108
+ G +D
Sbjct 110 ISGSLD 115
Lambda K H a alpha
0.322 0.138 0.392 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 43576
Database: e45a50fdac90b6773641bef845fd005e.SwissProt.fasta
Posted date: May 19, 2024 9:25 PM
Number of letters in database: 511
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
