BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 50a6239df0b3208c21be4e98f9bd672b.SwissProt.fasta
18 sequences; 10,272 total letters
Query= ACIAD2242
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
P76245 Diguanylate cyclase DgcP [Escherichia coli (strain K12)] 102 5e-28
P76237 Probable diguanylate cyclase DgcJ [Escherichia coli (strai... 83.6 6e-21
Q83KM9 Putative diguanylate cyclase DgcQ [Shigella flexneri] 82.4 2e-20
Q1RAI4 Probable diguanylate cyclase DgcQ [Escherichia coli (strai... 81.3 4e-20
Q32HJ0 Probable diguanylate cyclase DgcQ [Shigella dysenteriae se... 80.9 6e-20
Q8XB92 Probable diguanylate cyclase DgcQ [Escherichia coli O157:H7] 80.9 6e-20
P76330 Probable diguanylate cyclase DgcQ [Escherichia coli (strai... 80.9 6e-20
Q3Z0N3 Probable diguanylate cyclase DgcQ [Shigella sonnei (strain... 80.9 6e-20
Q8FGJ7 Probable diguanylate cyclase DgcQ [Escherichia coli O6:H1 ... 80.5 7e-20
Q9HT84 Diguanylate cyclase DgcP [Pseudomonas aeruginosa (strain A... 79.3 2e-19
Q9HYT3 Uncharacterized signaling protein PA3311 [Pseudomonas aeru... 79.3 2e-19
A0A0H2ZJS2 Diguanylate cyclase DgcP [Pseudomonas aeruginosa (stra... 78.2 5e-19
P54595 Uncharacterized protein YhcK [Bacillus subtilis (strain 168)] 77.0 6e-19
P24222 Uncharacterized protein in hutH 5'region [Streptomyces gri... 73.9 2e-18
P0AAP1 Probable diguanylate cyclase DgcC [Escherichia coli (strai... 74.7 4e-18
Q8EJM6 Cyclic di-GMP phosphodiesterase PdeB [Shewanella oneidensi... 74.3 1e-17
P38097 Probable diguanylate cyclase DgcE [Escherichia coli (strai... 74.3 1e-17
P77302 Diguanylate cyclase DgcM [Escherichia coli (strain K12)] 72.4 3e-17
>P76245 Diguanylate cyclase DgcP [Escherichia coli (strain K12)]
Length=341
Score = 102 bits (254), Expect = 5e-28
Identities = 76/266 (29%), Positives = 131/266 (49%), Gaps = 18/266 (7%)
Query 58 NWADSFCSHMVLGNAPRIAPYSEEIP-LYASAPIAKQVDIKAYIGQPLLNEDGSLFGTLC 116
+W S C + N +S+E+P + A+ + I ++ P+ DGS +GTLC
Sbjct 71 SWDYSLCKRAIDENCF----FSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126
Query 117 AIDPQPKSRKIIEDEDLIELFGNLLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNR 176
A + K + E +++LF L++ +Q+E + + L +++ D+LTG+ NR
Sbjct 127 AASSE-KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185
Query 177 RGWNQFIEAEEQRCKQYGYPAAIFMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQ 236
R + + + + I IDL++ KL+ND+ GH GD L Q L NTL+Q
Sbjct 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL-NTLQQ 244
Query 237 E-DLVARLGGDEFGILTLGHDIHRIEQLKNRIIAALKAA---------KISAAIGYAIRH 286
+++ RLGGDEF +++L ++ I L+ RI ++ A++G
Sbjct 245 NGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304
Query 287 P-SFDLESACAHADEQMYQHKRRNKR 311
P + D +SA AD MYQ K+ ++
Sbjct 305 PETTDADSALHAADIAMYQEKKHKQK 330
>P76237 Probable diguanylate cyclase DgcJ [Escherichia coli (strain
K12)]
Length=496
Score = 83.6 bits (205), Expect = 6e-21
Identities = 62/183 (34%), Positives = 94/183 (51%), Gaps = 11/183 (6%)
Query 136 LFGNLLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGY 195
LF L + IL +R + RL++ + E + DA+TG+YNR+ +E Q+ Q G
Sbjct 317 LFWILTALILLNMVRMH--FRLYQNVSRENISDAMTGLYNRKILTPELEQRLQKLVQSGS 374
Query 196 PAAIFMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGH 255
ID++ LK +ND GH EGD + A +K ++R+ D RLGGDEF I+ +
Sbjct 375 SVMFIAIDMDKLKQINDTLGHQEGDLAITLLAQAIKQSIRKSDYAIRLGGDEFCIILVDS 434
Query 256 DIHRIEQLKNRI------IAALKAAKISAAIGYAIRHPSFDLESACAHADEQMYQHKR-R 308
QL RI IA K S+ I YA++ + L A +DE++Y +K+ +
Sbjct 435 TPQIAAQLPERIEKRLQHIAPQKEIGFSSGI-YAMKE-NDTLHDAYKASDERLYVNKQNK 492
Query 309 NKR 311
N R
Sbjct 493 NSR 495
>Q83KM9 Putative diguanylate cyclase DgcQ [Shigella flexneri]
Length=569
Score = 82.4 bits (202), Expect = 2e-20
Identities = 52/183 (28%), Positives = 96/183 (52%), Gaps = 13/183 (7%)
Query 140 LLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAI 199
LLS + R + N + L L+ +A D LT +YNR + + C+ + +P ++
Sbjct 379 LLSWYVIRRMVSNMYV-LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSV 437
Query 200 FMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIHR 259
+DL+ K +ND+ GH GDR+L AA ++ ++LR +D+ R+GG+EF ++ G ++ +
Sbjct 438 IQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGANLTQ 497
Query 260 IEQLKNRI----------IAALKAAKISAAIGYAIRHPS--FDLESACAHADEQMYQHKR 307
++ RI IA +ISA++G + + +D E + AD ++Y K+
Sbjct 498 AAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQ 557
Query 308 RNK 310
+
Sbjct 558 AGR 560
>Q1RAI4 Probable diguanylate cyclase DgcQ [Escherichia coli (strain
UTI89 / UPEC)]
Length=569
Score = 81.3 bits (199), Expect = 4e-20
Identities = 51/183 (28%), Positives = 95/183 (52%), Gaps = 13/183 (7%)
Query 140 LLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAI 199
L+S + R + N + L L+ +A D LT +YNR + + C+ + +P ++
Sbjct 379 LISWYVIRRMVSNMYV-LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSV 437
Query 200 FMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIHR 259
+DL+ K +ND+ GH GDR+L AA ++ ++LR +D+ R+GG+EF ++ G + +
Sbjct 438 IQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTQ 497
Query 260 IEQLKNRI----------IAALKAAKISAAIGYAIRHPS--FDLESACAHADEQMYQHKR 307
++ RI IA +ISA++G + + +D E + AD ++Y K+
Sbjct 498 AAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQ 557
Query 308 RNK 310
+
Sbjct 558 AGR 560
>Q32HJ0 Probable diguanylate cyclase DgcQ [Shigella dysenteriae
serotype 1 (strain Sd197)]
Length=564
Score = 80.9 bits (198), Expect = 6e-20
Identities = 51/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query 140 LLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAI 199
L+S + R + N + L L+ +A D LT +YNR + + C+ + +P ++
Sbjct 374 LISWYVIRRMVSNMYV-LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSV 432
Query 200 FMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIHR 259
+DL+ K +ND+ GH GDR+L AA ++ ++LR +D+ R+GG+EF ++ G +
Sbjct 433 IQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTE 492
Query 260 IEQLKNRI----------IAALKAAKISAAIGYAIRHPS--FDLESACAHADEQMYQHKR 307
++ RI IA +ISA++G + + +D E + AD ++Y K+
Sbjct 493 AAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQ 552
Query 308 RNK 310
+
Sbjct 553 AGR 555
>Q8XB92 Probable diguanylate cyclase DgcQ [Escherichia coli O157:H7]
Length=564
Score = 80.9 bits (198), Expect = 6e-20
Identities = 51/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query 140 LLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAI 199
L+S + R + N + L L+ +A D LT +YNR + + C+ + +P ++
Sbjct 374 LISWYVIRRMVSNMYV-LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSV 432
Query 200 FMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIHR 259
+DL+ K +ND+ GH GDR+L AA ++ ++LR +D+ R+GG+EF ++ G +
Sbjct 433 IQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTE 492
Query 260 IEQLKNRI----------IAALKAAKISAAIGYAIRHPS--FDLESACAHADEQMYQHKR 307
++ RI IA +ISA++G + + +D E + AD ++Y K+
Sbjct 493 AAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQ 552
Query 308 RNK 310
+
Sbjct 553 AGR 555
>P76330 Probable diguanylate cyclase DgcQ [Escherichia coli (strain
K12)]
Length=564
Score = 80.9 bits (198), Expect = 6e-20
Identities = 51/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query 140 LLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAI 199
L+S + R + N + L L+ +A D LT +YNR + + C+ + +P ++
Sbjct 374 LISWYVIRRMVSNMYV-LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSV 432
Query 200 FMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIHR 259
+DL+ K +ND+ GH GDR+L AA ++ ++LR +D+ R+GG+EF ++ G +
Sbjct 433 IQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTE 492
Query 260 IEQLKNRI----------IAALKAAKISAAIGYAIRHPS--FDLESACAHADEQMYQHKR 307
++ RI IA +ISA++G + + +D E + AD ++Y K+
Sbjct 493 AAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQ 552
Query 308 RNK 310
+
Sbjct 553 AGR 555
>Q3Z0N3 Probable diguanylate cyclase DgcQ [Shigella sonnei (strain
Ss046)]
Length=569
Score = 80.9 bits (198), Expect = 6e-20
Identities = 51/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query 140 LLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAI 199
L+S + R + N + L L+ +A D LT +YNR + + C+ + +P ++
Sbjct 379 LISWYVIRRMVSNMYV-LQSSLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSV 437
Query 200 FMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIHR 259
+DL+ K +ND+ GH GDR+L AA ++ ++LR +D+ R+GG+EF ++ G +
Sbjct 438 IQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTE 497
Query 260 IEQLKNRI----------IAALKAAKISAAIGYAIRHPS--FDLESACAHADEQMYQHKR 307
++ RI IA +ISA++G + + +D E + AD ++Y K+
Sbjct 498 AAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQ 557
Query 308 RNK 310
+
Sbjct 558 AGR 560
>Q8FGJ7 Probable diguanylate cyclase DgcQ [Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC)]
Length=569
Score = 80.5 bits (197), Expect = 7e-20
Identities = 52/183 (28%), Positives = 95/183 (52%), Gaps = 13/183 (7%)
Query 140 LLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAI 199
LLS + R + N + L L+ +A D LT +YNR + + C + +P ++
Sbjct 379 LLSWYVIRRMVSNMYV-LQSSLQWQAWHDTLTRLYNRGALFEKACPLAKLCHTHQHPFSV 437
Query 200 FMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIHR 259
+DL+ K +ND+ GH GDR+L AA ++ ++LR +D+ R+GG+EF ++ G ++ +
Sbjct 438 IQVDLDHFKAINDRFGHQAGDRVLSHAAGLISSSLRAQDIAGRVGGEEFCVILPGANLTQ 497
Query 260 IEQLKNRI----------IAALKAAKISAAIGYAIRHPS--FDLESACAHADEQMYQHKR 307
++ RI IA +ISA++G + + +D E + AD ++Y K+
Sbjct 498 AAEVAERIRLKLNEKEMLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQ 557
Query 308 RNK 310
+
Sbjct 558 AGR 560
>Q9HT84 Diguanylate cyclase DgcP [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=671
Score = 79.3 bits (194), Expect = 2e-19
Identities = 60/215 (28%), Positives = 100/215 (47%), Gaps = 16/215 (7%)
Query 108 DGSLFGTLCAIDPQPKSRKIIEDEDLIELFGNLLSHILQREIRENEQIRLHERL---RSE 164
D L G L ++D + + E E + G L + + + E + H L R +
Sbjct 455 DSRLNGLLASMDEHQREQAEHEQE----VSGRLQALMERVNSMEQDAKAFHSHLEDQRQK 510
Query 165 AVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAIFMIDLNDLKLMNDQRGHAEGDRLLQ 224
A+ D LTG+ NR ++ +E E R + G + ++D++ K +ND GH GD++L+
Sbjct 511 ALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLK 570
Query 225 QAATILKNTLRQEDLVARLGGDEFGILTLGHDIHRIEQLKNRIIAALKAA---------K 275
A L+ LRQ D +AR GG+EF +L + QL R+ AA+ A
Sbjct 571 IIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLS 630
Query 276 ISAAIGYAIRHPSFDLESACAHADEQMYQHKRRNK 310
I+ + G + E+ AD+ +Y+ KR +
Sbjct 631 ITCSAGITAFEGNEAGEAVFERADQALYRAKRAGR 665
Score = 20.0 bits (40), Expect = 2.4
Identities = 25/76 (33%), Positives = 37/76 (49%), Gaps = 13/76 (17%)
Query 146 QREIRENEQIRLHERLRSEA--VIDALTG----IYNRRGWNQFIEAEEQRCKQYGYPAAI 199
QR+ E + +L+ERL S + DA G + N RG++Q + + G A++
Sbjct 388 QRDFEEYLR-QLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVS-----GLQASV 441
Query 200 FMI-DLNDLKLMNDQR 214
DLN LKL D R
Sbjct 442 QQATDLNSLKLAVDSR 457
>Q9HYT3 Uncharacterized signaling protein PA3311 [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=783
Score = 79.3 bits (194), Expect = 2e-19
Identities = 47/155 (30%), Positives = 79/155 (51%), Gaps = 16/155 (10%)
Query 146 QREIRENEQIRL--------HERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPA 197
+R + EN ++ H LR A D+LTG+ NR +N+ + C+ G
Sbjct 318 ERRLSENSRVNALLNQLDHAHASLRQMARYDSLTGLQNRTAFNEVFVQHLENCRLRGKGL 377
Query 198 AIFMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGI---LTLG 254
A+ +DL+ K +ND GH GD+LL+ + +++ LR D+VAR GDEF + LT
Sbjct 378 AVMFLDLDHFKRINDSLGHDSGDQLLKIVSERIRSVLRDSDVVARFAGDEFCVLADLTQD 437
Query 255 HDIHRIEQ-----LKNRIIAALKAAKISAAIGYAI 284
H+ H + Q +K I + ++A++G ++
Sbjct 438 HEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSL 472
Score = 19.6 bits (39), Expect = 3.2
Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 0/12 (0%)
Query 132 DLIELFGNLLSH 143
D++E GN LSH
Sbjct 102 DMVERVGNSLSH 113
>A0A0H2ZJS2 Diguanylate cyclase DgcP [Pseudomonas aeruginosa (strain
UCBPP-PA14)]
Length=671
Score = 78.2 bits (191), Expect = 5e-19
Identities = 60/215 (28%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query 108 DGSLFGTLCAIDPQPKSRKIIEDEDLIELFGNLLSHILQREIRENEQIRLHERL---RSE 164
D L G L ++D + + E E + G L + + + E + H L R +
Sbjct 455 DSRLNGLLASMDEHQREQAEHEQE----VSGRLQALMERVNSMEQDAKAFHSHLEDQRQK 510
Query 165 AVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAIFMIDLNDLKLMNDQRGHAEGDRLLQ 224
A+ D LTG+ NR ++ +E E R + G + ++D++ K +ND GH GD++L+
Sbjct 511 ALTDPLTGLPNRAALSERLEQEVARRHRDGGDLLLAVLDIDHFKRINDDFGHLAGDKVLK 570
Query 225 QAATILKNTLRQEDLVARLGGDEFGILTLGHDIHRIEQLKNRIIAALKAA---------K 275
A L+ LRQ D +AR GG+EF +L + QL R+ AA+ A
Sbjct 571 IIAGELRKRLRQADFIARFGGEEFVVLLPATSLEAGRQLLERLRAAIAACPFHFKGEPLS 630
Query 276 ISAAIGYAIRHPSFDLESACAHADEQMYQHKRRNK 310
I+ + G + E AD+ +Y+ KR +
Sbjct 631 ITCSAGITAFEGNEAGEVVFERADQALYRAKRAGR 665
Score = 20.0 bits (40), Expect = 2.4
Identities = 25/76 (33%), Positives = 37/76 (49%), Gaps = 13/76 (17%)
Query 146 QREIRENEQIRLHERLRSEA--VIDALTG----IYNRRGWNQFIEAEEQRCKQYGYPAAI 199
QR+ E + +L+ERL S + DA G + N RG++Q + + G A++
Sbjct 388 QRDFEEYLR-QLNERLESFLGHLGDAHAGYTDVLDNARGFDQSLREQVS-----GLQASV 441
Query 200 FMI-DLNDLKLMNDQR 214
DLN LKL D R
Sbjct 442 QQATDLNSLKLAVDSR 457
>P54595 Uncharacterized protein YhcK [Bacillus subtilis (strain
168)]
Length=359
Score = 77.0 bits (188), Expect = 6e-19
Identities = 46/146 (32%), Positives = 81/146 (55%), Gaps = 5/146 (3%)
Query 133 LIELFGNLLS-HILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEA-EEQRC 190
+I + G +LS +I+ E + L ++ + +A D LTG+YNRR + + +A +Q
Sbjct 162 IISIAGGMLSLYIIDHETNAH---LLFKQYKFQAHFDFLTGVYNRRKFEETTKALYQQAA 218
Query 191 KQYGYPAAIFMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGI 250
+ A+ +D++ K +NDQ GH EGD++L++ LK T+R D AR+GG+EF +
Sbjct 219 DTPHFQFALIYMDIDHFKTINDQYGHHEGDQVLKELGLRLKQTIRNTDPAARIGGEEFAV 278
Query 251 LTLGHDIHRIEQLKNRIIAALKAAKI 276
L + + ++ RI + + A I
Sbjct 279 LLPNCSLDKAARIAERIRSTVSDAPI 304
>P24222 Uncharacterized protein in hutH 5'region [Streptomyces
griseus]
Length=241
Score = 73.9 bits (180), Expect = 2e-18
Identities = 44/120 (37%), Positives = 68/120 (57%), Gaps = 5/120 (4%)
Query 137 FGNLLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYP 196
F +L+ ++ I + E++ E +R A D LTG+ NRR + ++ +R +
Sbjct 29 FATVLAAVVASGIAQTERL---EEVRKLAFTDPLTGLANRRAVDVRLDEAMERHRVDATV 85
Query 197 AAIFMIDLNDLKLMNDQRGHAEGDRLLQQAATILK--NTLRQEDLVARLGGDEFGILTLG 254
++ + DLN LK +ND GHA GDRLL++ ++L + E L ARLGGDEF +LT G
Sbjct 86 VSLVVCDLNGLKAVNDTHGHAVGDRLLERFGSVLSLCGAMLPEALAARLGGDEFCLLTAG 145
>P0AAP1 Probable diguanylate cyclase DgcC [Escherichia coli (strain
K12)]
Length=371
Score = 74.7 bits (182), Expect = 4e-18
Identities = 34/95 (36%), Positives = 53/95 (56%), Gaps = 0/95 (0%)
Query 160 RLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAAIFMIDLNDLKLMNDQRGHAEG 219
RL+ + D +TG+YNRR W + E C+++ A + +ID++ K +ND GH G
Sbjct 205 RLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVG 264
Query 220 DRLLQQAATILKNTLRQEDLVARLGGDEFGILTLG 254
D + L+ TLR D++ R GGDEF ++ G
Sbjct 265 DEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSG 299
>Q8EJM6 Cyclic di-GMP phosphodiesterase PdeB [Shewanella oneidensis
(strain MR-1)]
Length=856
Score = 74.3 bits (181), Expect = 1e-17
Identities = 50/179 (28%), Positives = 88/179 (49%), Gaps = 24/179 (13%)
Query 139 NLLSH--------ILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRC 190
N+L+H ++ R+I + E ++ +L+ A D +TG+ NR+ + + + +
Sbjct 396 NVLNHEKEIVGTVVVLRDITQEELLK--HQLQKRANFDGITGLLNRQAFEEQLPEFASQA 453
Query 191 KQYGYPAAIFMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGI 250
+ A+ +DL KL+ND GH GDR+L A +++ L ++L+AR+GGDEFG+
Sbjct 454 RSL----AVCYLDLEQFKLINDSCGHTAGDRMLAMVARAIQSCLGPQELLARIGGDEFGL 509
Query 251 LTLGHDIHRIEQLKNRIIAALKAA---------KISAAIGYAI-RHPSFDLESACAHAD 299
+ + QL +IIA + K+ +IG A R P + + AD
Sbjct 510 VICDRTALAVAQLLKQIIAQVSLQVLHDKNCNYKVGLSIGVAFGRAPYINAQELLKDAD 568
>P38097 Probable diguanylate cyclase DgcE [Escherichia coli (strain
K12)]
Length=1105
Score = 74.3 bits (181), Expect = 1e-17
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 2/133 (2%)
Query 139 NLLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQYGYPAA 198
N+ S ++ +++ E+ ++ +L A DALT + NR + + + Q A
Sbjct 658 NIGSVLVIQDVTESR--KMLRQLSYSASHDALTHLANRASFEKQLRILLQTVNSTHQRHA 715
Query 199 IFMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTLGHDIH 258
+ IDL+ K +ND GHA GD LL++ A+++ + LR D++ARLGGDEFG+L ++
Sbjct 716 LVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVE 775
Query 259 RIEQLKNRIIAAL 271
+ RII+A+
Sbjct 776 SARFIATRIISAV 788
>P77302 Diguanylate cyclase DgcM [Escherichia coli (strain K12)]
Length=410
Score = 72.4 bits (176), Expect = 3e-17
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 8/179 (4%)
Query 134 IELFGNLLSHILQREIRENEQIRLHERLRSEAVIDALTGIYNRRGWNQFIEAEEQRCKQY 193
IE++G+ L + +I EQ RL E+L A DA+TG+ NRR + E + +
Sbjct 224 IEIYGDKLMLCIVHDI--TEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAI 281
Query 194 GYPAAIFMIDLNDLKLMNDQRGHAEGDRLLQQAATILKNTLRQEDLVARLGGDEFGILTL 253
++ +ID + K +ND GH++GD +L A L++ R+ DLV R GG+EF +L
Sbjct 282 AQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLLP 341
Query 254 GHDIHRIEQLKNRIIAALKAAKIS------AAIGYAIRHPSFDLESACAHADEQMYQHK 306
+ L I ++ IS +IG A + ++ D+ +Y+ K
Sbjct 342 RTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAK 400
Lambda K H a alpha
0.324 0.139 0.420 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2450748
Database: 50a6239df0b3208c21be4e98f9bd672b.SwissProt.fasta
Posted date: May 30, 2024 3:51 PM
Number of letters in database: 10,272
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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