BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: addc1a0e1b3db1621d8a1dbcd9579863.SwissProt.fasta
4 sequences; 1,483 total letters
Query= ACIAD2246
Length=350
Score E
Sequences producing significant alignments: (Bits) Value
Q04064 Outer membrane porin protein BP0840 [Bordetella pertussis ... 67.8 2e-16
A9ZM27 Monosaccharide porin [Halomonas sp] 57.4 4e-13
E1V825 Major outer membrane protein [Halomonas elongata (strain A... 57.4 4e-13
Q9KK91 Chitoporin [Vibrio furnissii] 41.6 5e-08
>Q04064 Outer membrane porin protein BP0840 [Bordetella pertussis
(strain Tohama I / ATCC BAA-589 / NCTC 13251)]
Length=385
Score = 67.8 bits (164), Expect = 2e-16
Identities = 62/247 (25%), Positives = 105/247 (43%), Gaps = 34/247 (14%)
Query 19 NLQLSGLIDTGIA--SVSNVKQGTKTKTTG----------VDSILGVSNLGLSGDYKIDE 66
++ L G+IDTGI V +G + ++ + S GL G + +
Sbjct 23 SVTLYGIIDTGIGYNDVDFKVKGANADDSDFKYNHSRFGMINGVQNGSRWGLRGTEDLGD 82
Query 67 DYQAFFKLQAGFNPSKGEQSKDGELFDRNAYIGMKT-PYGAVSIGKQWTFNDDWLVGSVF 125
QA F+L++GFN G ++DG LF R A IG+++ +G + G+Q + GS+
Sbjct 83 GLQAVFQLESGFNSGNGNSAQDGRLFGRQATIGLQSESWGRLDFGRQTNIASKYF-GSID 141
Query 126 KGGYNSGAIFKFSEFDAVSEI-YSNLVKYTSPEMNGWQFGAIYGL----KDDSTKNTHG- 179
G G A++ + Y N+V Y +P +G+QFG Y KD N G
Sbjct 142 PFGAGFGQANIGMGMSAMNTVRYDNMVMYQTPSYSGFQFGIGYSFSANDKDADAVNRVGF 201
Query 180 ------QIFSGAFKYATNQWMIGGAYEDHEAQDNDHHYKLST------LASRYNFSKLST 227
+ + +Y + +Y+ A +N ++ L Y+F +
Sbjct 202 ATADNVRAITTGLRYVNGPLNVALSYDQLNASNNQAQGEVDATPRSYGLGGSYDFEVV-- 259
Query 228 RLGIAYA 234
+L +AYA
Sbjct 260 KLALAYA 266
Score = 20.8 bits (42), Expect = 0.21
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 7/45 (16%)
Query 92 FDRNAY-IGMKTPYGAVS-IGKQWTFNDDWLVG-----SVFKGGY 129
F N+Y +G+ P G S + W D L G +VF GY
Sbjct 302 FKANSYMVGLSAPIGGASNVFGSWQMVDPKLTGGDEKMNVFSLGY 346
Score = 16.2 bits (30), Expect = 6.0
Identities = 5/8 (63%), Positives = 6/8 (75%), Gaps = 0/8 (0%)
Query 230 GIAYADID 237
GI Y D+D
Sbjct 33 GIGYNDVD 40
>A9ZM27 Monosaccharide porin [Halomonas sp]
Length=366
Score = 57.4 bits (137), Expect = 4e-13
Identities = 62/284 (22%), Positives = 108/284 (38%), Gaps = 45/284 (16%)
Query 7 SHAAINLTSGGVNLQLSGLIDTGIASVSNVKQGTKTKTTGVDSILGVSNLGLSGDYKIDE 66
+ AA G L + G + G ++ +T D S +G + ++ I +
Sbjct 19 AQAATVYNQDGTKLDIYGNVQIGFRNIEAENDNGNIETQN-DVFDNGSTIGFAAEHVIYD 77
Query 67 DYQAFFKLQAGFNPSKGEQSKD-GELFDRNAYIGMKTPYGAVSIGKQWTFNDDWLVGSVF 125
+ K++ F+ K ++ K G AY+G+K +G V +G T DDW+ +
Sbjct 78 GLTGYMKIE--FDDFKADEMKTAGRDAGDTAYVGLKGNFGDVKLGSYDTLMDDWIQDPIT 135
Query 126 KGGYNSGAIFKFSEFDAVS---EIYSNLVKYTSPEMNGWQFGAIYGLKDDS-----TKNT 177
Y + S V+ E+ ++ + Y SP NG + K D T
Sbjct 136 NNEYFDVSDTSGSGSSVVAVGGEVETDQLTYVSPSFNGLELAIGTQYKGDMEEENVTSRG 195
Query 178 HGQIFSGAFKYATNQWMIGGAYE------------DHEAQDNDHH-----YKLSTL--AS 218
+ +F GA KY + + Y+ D++ + D + Y+ ++L A
Sbjct 196 NASVFGGA-KYTAGNFSVAATYDNLDNYEVTQTGVDNKQEFGDRYGVTGQYQWNSLRVAL 254
Query 219 RY-------------NFSKLSTRLGIAYADIDGPGQYAAIASNS 249
+Y NF L R G Y DI G QY + ++
Sbjct 255 KYERFDSDLDNVDSVNFYGLGARYGYGYGDIYGAYQYVDVGGDT 298
Score = 20.8 bits (42), Expect = 0.21
Identities = 19/84 (23%), Positives = 33/84 (39%), Gaps = 15/84 (18%)
Query 136 KFSEFDAVSEIYSNLVKYTSPEMNGWQFGAIYGLKD--DSTKNTHGQIFSGAFKYAT--- 190
K+ FD+ + ++ Y G+ +G IYG D +T G + A +
Sbjct 255 KYERFDSDLDNVDSVNFYGLGARYGYGYGDIYGAYQYVDVGGDTFGNVVDDATSGDSPSD 314
Query 191 ----------NQWMIGGAYEDHEA 204
N+++IGG Y +A
Sbjct 315 TASDRGDDTYNEFIIGGTYNISDA 338
Score = 16.2 bits (30), Expect = 5.9
Identities = 7/18 (39%), Positives = 8/18 (44%), Gaps = 0/18 (0%)
Query 155 SPEMNGWQFGAIYGLKDD 172
S M W A Y +DD
Sbjct 336 SDAMYTWVEAAFYDREDD 353
>E1V825 Major outer membrane protein [Halomonas elongata (strain
ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)]
Length=366
Score = 57.4 bits (137), Expect = 4e-13
Identities = 62/284 (22%), Positives = 108/284 (38%), Gaps = 45/284 (16%)
Query 7 SHAAINLTSGGVNLQLSGLIDTGIASVSNVKQGTKTKTTGVDSILGVSNLGLSGDYKIDE 66
+ AA G L + G + G ++ +T D S +G + ++ I +
Sbjct 19 AQAATVYNQDGTKLDIYGNVQIGFRNIEAENDNGNIETQN-DVFDNGSTIGFAAEHVIYD 77
Query 67 DYQAFFKLQAGFNPSKGEQSKD-GELFDRNAYIGMKTPYGAVSIGKQWTFNDDWLVGSVF 125
+ K++ F+ K ++ K G AY+G+K +G V +G T DDW+ +
Sbjct 78 GLTGYMKIE--FDDFKADEMKTAGRDAGDTAYVGLKGNFGDVKLGSYDTLMDDWIQDPIT 135
Query 126 KGGYNSGAIFKFSEFDAVS---EIYSNLVKYTSPEMNGWQFGAIYGLKDDS-----TKNT 177
Y + S V+ E+ ++ + Y SP NG + K D T
Sbjct 136 NNEYFDVSDTSGSGSSVVAVGGEVETDQLTYVSPSFNGLELAIGTQYKGDMEEENVTSRG 195
Query 178 HGQIFSGAFKYATNQWMIGGAYE------------DHEAQDNDHH-----YKLSTL--AS 218
+ +F GA KY + + Y+ D++ + D + Y+ ++L A
Sbjct 196 NASVFGGA-KYTAGNFSVAATYDNLDNYEVTQTGVDNKQEFGDRYGVTGQYQWNSLRVAL 254
Query 219 RY-------------NFSKLSTRLGIAYADIDGPGQYAAIASNS 249
+Y NF L R G Y DI G QY + ++
Sbjct 255 KYERFDSDLDNVDSVNFYGLGARYGYGYGDIYGAYQYVDVGGDT 298
Score = 20.8 bits (42), Expect = 0.21
Identities = 19/84 (23%), Positives = 33/84 (39%), Gaps = 15/84 (18%)
Query 136 KFSEFDAVSEIYSNLVKYTSPEMNGWQFGAIYGLKD--DSTKNTHGQIFSGAFKYAT--- 190
K+ FD+ + ++ Y G+ +G IYG D +T G + A +
Sbjct 255 KYERFDSDLDNVDSVNFYGLGARYGYGYGDIYGAYQYVDVGGDTFGNVVDDATSGDSPSD 314
Query 191 ----------NQWMIGGAYEDHEA 204
N+++IGG Y +A
Sbjct 315 TASDRGDDTYNEFIIGGTYNISDA 338
Score = 16.2 bits (30), Expect = 5.9
Identities = 7/18 (39%), Positives = 8/18 (44%), Gaps = 0/18 (0%)
Query 155 SPEMNGWQFGAIYGLKDD 172
S M W A Y +DD
Sbjct 336 SDAMYTWVEAAFYDREDD 353
>Q9KK91 Chitoporin [Vibrio furnissii]
Length=366
Score = 41.6 bits (96), Expect = 5e-08
Identities = 48/216 (22%), Positives = 86/216 (40%), Gaps = 35/216 (16%)
Query 9 AAINLTSGGVNLQLSGL-----IDT-GIASVSNVKQGTKTKTTGVDSIL--GVSNLGLSG 60
AA+ L S G+ + G+ +D G+A++S V T + S +G
Sbjct 12 AAVALASTGLMAKEVGVNSDFNVDVYGVAAMSVVNYNTTDNRDDSSGYVLENESRIGFRA 71
Query 61 DYKIDEDYQAFFKLQAGFNPSK--GEQSKDGELFD-RNAYIGMKTPYGAVSIGK------ 111
++ E++ ++++G+ S G G + R+ YIG +G V +G+
Sbjct 72 HKEMFENFTVTMQIESGYVDSTDWGHGGVSGGVLGFRDTYIGASGDWGNVRVGRVLTPLY 131
Query 112 ---QWTFNDDWLVGSVFKGGYNSGAIFKFSEFDAVSEIYSNLVKYTSPEMNGWQFGAIYG 168
W F++ L GA F + +A + SN ++Y SP+ G+ F A G
Sbjct 132 EIVDWPFSNPGL-----------GAAFDWGGINAHYDRQSNQIRYDSPKFGGFSFAASVG 180
Query 169 LKDD----STKNTHGQIFSGAFKYATNQWMIGGAYE 200
D+ F +Y+ + + GA E
Sbjct 181 RDDNDNGGGAATRDANFFGANARYSFEKITLLGAVE 216
Score = 19.6 bits (39), Expect = 0.48
Identities = 10/28 (36%), Positives = 12/28 (43%), Gaps = 0/28 (0%)
Query 322 VNTDSNLAGGGYANQDQLSTAVGVRLTF 349
V D N GGG A +D R +F
Sbjct 179 VGRDDNDNGGGAATRDANFFGANARYSF 206
Lambda K H a alpha
0.316 0.133 0.389 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 412697
Database: addc1a0e1b3db1621d8a1dbcd9579863.SwissProt.fasta
Posted date: May 19, 2024 7:01 PM
Number of letters in database: 1,483
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
