Comparative Genomics

ACIAD2260 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 762e1af6ed4590df0d0a96e960fd806d.SwissProt.fasta
           8 sequences; 2,033 total letters



Query= ACIAD2260

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AFN9 Inner membrane transport permease YadH [Shigella flexneri]     318     5e-114
P0AFN6 Inner membrane transport permease YadH [Escherichia coli (...  318     5e-114
P0AFN7 Inner membrane transport permease YadH [Escherichia coli O...  318     5e-114
P0AFN8 Inner membrane transport permease YadH [Escherichia coli O...  318     5e-114
P50333 Nodulation protein J [Neorhizobium galegae]                    75.5    7e-20 
P55475 Nodulation protein J [Sinorhizobium fredii (strain NBRC 10...  66.6    1e-16 
P72336 Nodulation protein J [Rhizobium sp. (strain N33)]              60.8    1e-14 
Q9I3N6 Heme exporter protein B [Pseudomonas aeruginosa (strain AT...  35.4    3e-06 


>P0AFN9 Inner membrane transport permease YadH [Shigella flexneri]
Length=256

 Score = 318 bits (814),  Expect = 5e-114
 Identities = 148/248 (60%), Positives = 196/248 (79%), Gaps = 0/248 (0%)

Query  9    ALGTLVRKEIRRFMRIWPQTLLPPAITMSLYFVIFGNLVGSRVGQMGGFSYMQFIVPGLI  68
            AL ++  KEI RFMRIW QTL+PP ITM+LYF+IFGNL+GSR+G M GFSYMQFIVPGLI
Sbjct  8    ALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQFIVPGLI  67

Query  69   MMAIITNSYANVSSSFFSAKFQKSIEELIMSPVPLHLILWGYVIGGICRGVLVGIIVTLM  128
            MM++ITN+YANV+SSFF AKFQ++IEEL+++PVP H+I+ GYV GG+ RG+ VGI+VT +
Sbjct  68   MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI  127

Query  129  SLFFTDLYIHNWFVTIYTVFITSFLFSLGGFINAVYAKSFDDISIIPTFVLTPLTYLGGV  188
            SLFF    +H+W     T+ +T+ LFSL G +N V+AK+FDDIS++PTFVLTPLTYLGGV
Sbjct  128  SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV  187

Query  189  FYAMSALSPFWQNLSLVNPIVYMVNAFRFGILGQSDVNVSLSLIVVTLCCAILYGVAYYL  248
            FY+++ L PFWQ LS +NPIVYM++ FR+G LG +DV +  +  V+ +     Y + + L
Sbjct  188  FYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAFYLICWSL  247

Query  249  LSRGSGMR  256
            + RG G+R
Sbjct  248  IQRGRGLR  255


>P0AFN6 Inner membrane transport permease YadH [Escherichia coli 
(strain K12)]
Length=256

 Score = 318 bits (814),  Expect = 5e-114
 Identities = 148/248 (60%), Positives = 196/248 (79%), Gaps = 0/248 (0%)

Query  9    ALGTLVRKEIRRFMRIWPQTLLPPAITMSLYFVIFGNLVGSRVGQMGGFSYMQFIVPGLI  68
            AL ++  KEI RFMRIW QTL+PP ITM+LYF+IFGNL+GSR+G M GFSYMQFIVPGLI
Sbjct  8    ALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQFIVPGLI  67

Query  69   MMAIITNSYANVSSSFFSAKFQKSIEELIMSPVPLHLILWGYVIGGICRGVLVGIIVTLM  128
            MM++ITN+YANV+SSFF AKFQ++IEEL+++PVP H+I+ GYV GG+ RG+ VGI+VT +
Sbjct  68   MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI  127

Query  129  SLFFTDLYIHNWFVTIYTVFITSFLFSLGGFINAVYAKSFDDISIIPTFVLTPLTYLGGV  188
            SLFF    +H+W     T+ +T+ LFSL G +N V+AK+FDDIS++PTFVLTPLTYLGGV
Sbjct  128  SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV  187

Query  189  FYAMSALSPFWQNLSLVNPIVYMVNAFRFGILGQSDVNVSLSLIVVTLCCAILYGVAYYL  248
            FY+++ L PFWQ LS +NPIVYM++ FR+G LG +DV +  +  V+ +     Y + + L
Sbjct  188  FYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAFYLICWSL  247

Query  249  LSRGSGMR  256
            + RG G+R
Sbjct  248  IQRGRGLR  255


>P0AFN7 Inner membrane transport permease YadH [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=256

 Score = 318 bits (814),  Expect = 5e-114
 Identities = 148/248 (60%), Positives = 196/248 (79%), Gaps = 0/248 (0%)

Query  9    ALGTLVRKEIRRFMRIWPQTLLPPAITMSLYFVIFGNLVGSRVGQMGGFSYMQFIVPGLI  68
            AL ++  KEI RFMRIW QTL+PP ITM+LYF+IFGNL+GSR+G M GFSYMQFIVPGLI
Sbjct  8    ALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQFIVPGLI  67

Query  69   MMAIITNSYANVSSSFFSAKFQKSIEELIMSPVPLHLILWGYVIGGICRGVLVGIIVTLM  128
            MM++ITN+YANV+SSFF AKFQ++IEEL+++PVP H+I+ GYV GG+ RG+ VGI+VT +
Sbjct  68   MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI  127

Query  129  SLFFTDLYIHNWFVTIYTVFITSFLFSLGGFINAVYAKSFDDISIIPTFVLTPLTYLGGV  188
            SLFF    +H+W     T+ +T+ LFSL G +N V+AK+FDDIS++PTFVLTPLTYLGGV
Sbjct  128  SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV  187

Query  189  FYAMSALSPFWQNLSLVNPIVYMVNAFRFGILGQSDVNVSLSLIVVTLCCAILYGVAYYL  248
            FY+++ L PFWQ LS +NPIVYM++ FR+G LG +DV +  +  V+ +     Y + + L
Sbjct  188  FYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAFYLICWSL  247

Query  249  LSRGSGMR  256
            + RG G+R
Sbjct  248  IQRGRGLR  255


>P0AFN8 Inner membrane transport permease YadH [Escherichia coli 
O157:H7]
Length=256

 Score = 318 bits (814),  Expect = 5e-114
 Identities = 148/248 (60%), Positives = 196/248 (79%), Gaps = 0/248 (0%)

Query  9    ALGTLVRKEIRRFMRIWPQTLLPPAITMSLYFVIFGNLVGSRVGQMGGFSYMQFIVPGLI  68
            AL ++  KEI RFMRIW QTL+PP ITM+LYF+IFGNL+GSR+G M GFSYMQFIVPGLI
Sbjct  8    ALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQFIVPGLI  67

Query  69   MMAIITNSYANVSSSFFSAKFQKSIEELIMSPVPLHLILWGYVIGGICRGVLVGIIVTLM  128
            MM++ITN+YANV+SSFF AKFQ++IEEL+++PVP H+I+ GYV GG+ RG+ VGI+VT +
Sbjct  68   MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI  127

Query  129  SLFFTDLYIHNWFVTIYTVFITSFLFSLGGFINAVYAKSFDDISIIPTFVLTPLTYLGGV  188
            SLFF    +H+W     T+ +T+ LFSL G +N V+AK+FDDIS++PTFVLTPLTYLGGV
Sbjct  128  SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV  187

Query  189  FYAMSALSPFWQNLSLVNPIVYMVNAFRFGILGQSDVNVSLSLIVVTLCCAILYGVAYYL  248
            FY+++ L PFWQ LS +NPIVYM++ FR+G LG +DV +  +  V+ +     Y + + L
Sbjct  188  FYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAFYLICWSL  247

Query  249  LSRGSGMR  256
            + RG G+R
Sbjct  248  IQRGRGLR  255


>P50333 Nodulation protein J [Neorhizobium galegae]
Length=262

 Score = 75.5 bits (184),  Expect = 7e-20
 Identities = 54/241 (22%), Positives = 111/241 (46%), Gaps = 7/241 (3%)

Query  15   RKEIRRFMRIWPQTLLPPAITMSLYFVIFGNLVGSRVGQMGGFSYMQFIVPGLIMMAIIT  74
            R+    + ++ P +LL       +Y    G+ +G  +G +GG SY  F+  G++  + +T
Sbjct  21   RRNFLAWKKVAPASLLGNLADPMIYIFGLGSGLGVMLGNVGGVSYSAFLAAGMVATSAMT  80

Query  75   NS-YANVSSSFFSAKFQKSIEELIMSPVPLHLILWGYVIGGICRGVLVGIIVTLMSLFFT  133
             S +  + ++F   +  ++ E ++ + + L  I+ G +     +  L G   T + +   
Sbjct  81   ASTFETIYATFARMRDHRTWEAMLYTKLTLGDIVLGEMAWAATKASLAG---TAIGIVTA  137

Query  134  DLYIHNWFVTIYT---VFITSFLFSLGGFINAVYAKSFDDISIIPTFVLTPLTYLGGVFY  190
             L    W   IY    + +T   F+    + A  A S+D +    + V+TP+  L G  +
Sbjct  138  TLAYSEWDSLIYVFPVIALTGLAFASLSMVVAALAPSYDYLVFYQSLVITPMLVLSGSVF  197

Query  191  AMSALSPFWQNLSLVNPIVYMVNAFRFGILGQSDVNVSLSLIVVTLCCAILYGVAYYLLS  250
             +  LSP  Q ++ + P+ + ++  R  +LG    +++L L  + L   + + V+  LL 
Sbjct  198  PVEQLSPMLQRITHLLPLAHSIDLIRPAMLGHPVPDITLHLGALCLYIVLPFFVSIALLR  257

Query  251  R  251
            R
Sbjct  258  R  258


>P55475 Nodulation protein J [Sinorhizobium fredii (strain NBRC 
101917 / NGR234)]
Length=262

 Score = 66.6 bits (161),  Expect = 1e-16
 Identities = 49/219 (22%), Positives = 104/219 (47%), Gaps = 9/219 (4%)

Query  37   SLYFVIFGNLVGSRVGQMGGFSYMQFIVPGLIMM-AIITNSYANVSSSFFSAKFQKSIEE  95
            SL+ + FG  +G+ VG++ G  Y+ F+  G++   A+I+ ++  + ++F   + +++ E 
Sbjct  45   SLFGLGFG--LGAMVGRVDGIPYVAFLAAGMVATSAMISATFETIHATFARMQAKRTWES  102

Query  96   LIMSPVPLHLILWGYVIGGICRGVLVGIIVTLMSLFFTDLYIHNWFVTIYT---VFITSF  152
             + + + L  I+ G +     + +L G   T M L    +   +W   ++    + +T F
Sbjct  103  ALCTQLTLGDIVLGELAWAASKALLAG---TAMMLVAATMGFASWPSVLFALPVIALTGF  159

Query  153  LFSLGGFINAVYAKSFDDISIIPTFVLTPLTYLGGVFYAMSALSPFWQNLSLVNPIVYMV  212
             F+    I    A  +D      T  LTP+ +L G  + +S L   +Q LS + P+ + +
Sbjct  160  AFASLAMIVTALAPGYDYFIFYQTLFLTPMLFLSGAVFPVSQLPDIFQKLSHLLPLAHSI  219

Query  213  NAFRFGILGQSDVNVSLSLIVVTLCCAILYGVAYYLLSR  251
               R  +L +    V+L +  + +   + + ++  LL R
Sbjct  220  ELIRPAMLDRPGGGVALHISALCIFAVMPFFLSVGLLQR  258


>P72336 Nodulation protein J [Rhizobium sp. (strain N33)]
Length=262

 Score = 60.8 bits (146),  Expect = 1e-14
 Identities = 41/215 (19%), Positives = 100/215 (47%), Gaps = 1/215 (0%)

Query  38   LYFVIFGNLVGSRVGQMGGFSYMQFIVPGLIMMAIITNS-YANVSSSFFSAKFQKSIEEL  96
            +Y    G  +G  VG++   SY  F+  G++  + +T S +  + ++F     Q++ E +
Sbjct  44   IYLFGLGTGLGMMVGRVEDASYPAFLAAGMVATSAMTASTFETIYATFPRMNEQRTWEAI  103

Query  97   IMSPVPLHLILWGYVIGGICRGVLVGIIVTLMSLFFTDLYIHNWFVTIYTVFITSFLFSL  156
            + + + L  I+ G ++    R  L G  + ++++        +    +  + +T   F+ 
Sbjct  104  LHTQLTLGDIVLGELVWATTRAFLAGTAIAMVAVIAGYSAWSSVLYVLPVIALTGLAFAS  163

Query  157  GGFINAVYAKSFDDISIIPTFVLTPLTYLGGVFYAMSALSPFWQNLSLVNPIVYMVNAFR  216
               I    A S+       T  LTP+ +L G  + ++ L   +Q+++ + P+ + ++  R
Sbjct  164  LAMIVTALAPSYHYFIFYQTLFLTPMLFLSGAVFPVTQLPSTFQHIAGILPLAHSIDLIR  223

Query  217  FGILGQSDVNVSLSLIVVTLCCAILYGVAYYLLSR  251
             G+L +   +++L +  + +   + + ++  LL R
Sbjct  224  PGMLDRPAGDIALHIGALCIYAVVPFFLSMVLLRR  258


>Q9I3N6 Heme exporter protein B [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 
/ 1C / PRS 101 / PAO1)]
Length=223

 Score = 35.4 bits (80),  Expect = 3e-06
 Identities = 43/211 (20%), Positives = 85/211 (40%), Gaps = 14/211 (7%)

Query  6    LKTALGTLVRKEIRRFMRIWPQTLLPPAITMSLYFVIFGNLVGSRVGQMGGFSYMQFIVP  65
            +      L+ +E R   R  P  L  P +  ++   +F   VG           +Q + P
Sbjct  1    MSNVFSLLLAREARLLFRR-PAELANPLVFFAIVIALFPLAVGPES------QLLQTLSP  53

Query  66   GLIMMAIITNSYANVSSSFFSAKFQKSIEELIMSPVPLHLILWGYVIGGICRGVLVGIIV  125
            GL+ +A +     ++   F S     S+E+ ++SP PL L++   V   +   +  G+ +
Sbjct  54   GLVWVAALLAVLLSLEGLFRSDFEDGSMEQWVLSPHPLALLVLAKV---LAHWLFSGLAL  110

Query  126  TLMSLFFT---DLYIHNWFVTIYTVFITSFLFSLGGFINAVYAKSFDDISIIPTFVLTPL  182
             LMS  F     L      V + ++ + + + SL G + A          ++   ++ PL
Sbjct  111  VLMSPLFALMLGLPARCIPVLLLSLLLGTPVLSLLGAVGAALTVGLKRGGLLLALLILPL  170

Query  183  TYLGGVFYAMSALSPFWQNLSLVNPIVYMVN  213
             Y+  +     AL    Q L     ++++ +
Sbjct  171  -YIPVLILGSGALQASLQGLPSSGHLLWLAS  200



Lambda      K        H        a         alpha
   0.333    0.146    0.451    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 380380


  Database: 762e1af6ed4590df0d0a96e960fd806d.SwissProt.fasta
    Posted date:  May 8, 2024  6:39 AM
  Number of letters in database: 2,033
  Number of sequences in database:  8



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40