BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d066fa5fa1a4b3658f837b7cb93f7835.SwissProt.fasta
6 sequences; 2,231 total letters
Query= ACIAD2291
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
P0ABK3 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia c... 431 6e-155
P0ABK4 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia c... 431 6e-155
P0ABK2 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia c... 431 6e-155
P45020 Probable cytochrome oxidase subunit 2 [Haemophilus influen... 419 3e-150
P26458 Cytochrome bd-II ubiquinol oxidase subunit 2 [Escherichia ... 395 1e-140
P94365 Cytochrome bd ubiquinol oxidase subunit 2 [Bacillus subtil... 188 2e-60
>P0ABK3 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=379
Score = 431 bits (1109), Expect = 6e-155
Identities = 212/381 (56%), Positives = 270/381 (71%), Gaps = 2/381 (1%)
Query 1 MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGN 60
MI+YE+L+ IWW+LVGVLLIGFA+TDGFDMG + F+G+ D+ERR IN+IAPHWDGN
Sbjct 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
Query 61 QVWFITAGGALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD 120
QVW ITAGGALFAAWPMVYA AFSG Y A++LVL +LF RPVGFDYRSK+E T+WRN WD
Sbjct 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
Query 121 WALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSML 180
W + IG VP LV GVAFGNL GVPF++D+ LR YTG+FF LLNPF LL G+VS+ M+
Sbjct 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180
Query 181 CAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA 240
G +L +RT G L R+ Q+ +V L+CF AG W+ + + GY +D A
Sbjct 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG-IDGYVVKSTMDHYA 239
Query 241 ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLA 300
A NPL K+VV A A W+ N++ P+ P + ++ L+ I+ A KA +F +SL
Sbjct 240 ASNPLNKEVVREAGA-WLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298
Query 301 IIGAILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWS 360
+ ILTAG A+FPF++PSS +SLTMWDA SS TL VMT A + VP+IL+YT+W
Sbjct 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358
Query 361 YYKMWGVITNKHIEANSHSLY 381
Y+KM+G IT + IE N+HSLY
Sbjct 359 YWKMFGRITKEDIERNTHSLY 379
>P0ABK4 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia
coli O157:H7]
Length=379
Score = 431 bits (1109), Expect = 6e-155
Identities = 212/381 (56%), Positives = 270/381 (71%), Gaps = 2/381 (1%)
Query 1 MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGN 60
MI+YE+L+ IWW+LVGVLLIGFA+TDGFDMG + F+G+ D+ERR IN+IAPHWDGN
Sbjct 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
Query 61 QVWFITAGGALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD 120
QVW ITAGGALFAAWPMVYA AFSG Y A++LVL +LF RPVGFDYRSK+E T+WRN WD
Sbjct 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
Query 121 WALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSML 180
W + IG VP LV GVAFGNL GVPF++D+ LR YTG+FF LLNPF LL G+VS+ M+
Sbjct 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180
Query 181 CAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA 240
G +L +RT G L R+ Q+ +V L+CF AG W+ + + GY +D A
Sbjct 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG-IDGYVVKSTMDHYA 239
Query 241 ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLA 300
A NPL K+VV A A W+ N++ P+ P + ++ L+ I+ A KA +F +SL
Sbjct 240 ASNPLNKEVVREAGA-WLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298
Query 301 IIGAILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWS 360
+ ILTAG A+FPF++PSS +SLTMWDA SS TL VMT A + VP+IL+YT+W
Sbjct 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358
Query 361 YYKMWGVITNKHIEANSHSLY 381
Y+KM+G IT + IE N+HSLY
Sbjct 359 YWKMFGRITKEDIERNTHSLY 379
>P0ABK2 Cytochrome bd-I ubiquinol oxidase subunit 2 [Escherichia
coli (strain K12)]
Length=379
Score = 431 bits (1109), Expect = 6e-155
Identities = 212/381 (56%), Positives = 270/381 (71%), Gaps = 2/381 (1%)
Query 1 MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGN 60
MI+YE+L+ IWW+LVGVLLIGFA+TDGFDMG + F+G+ D+ERR IN+IAPHWDGN
Sbjct 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60
Query 61 QVWFITAGGALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD 120
QVW ITAGGALFAAWPMVYA AFSG Y A++LVL +LF RPVGFDYRSK+E T+WRN WD
Sbjct 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120
Query 121 WALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSML 180
W + IG VP LV GVAFGNL GVPF++D+ LR YTG+FF LLNPF LL G+VS+ M+
Sbjct 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180
Query 181 CAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA 240
G +L +RT G L R+ Q+ +V L+CF AG W+ + + GY +D A
Sbjct 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYG-IDGYVVKSTMDHYA 239
Query 241 ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLA 300
A NPL K+VV A A W+ N++ P+ P + ++ L+ I+ A KA +F +SL
Sbjct 240 ASNPLNKEVVREAGA-WLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLT 298
Query 301 IIGAILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWS 360
+ ILTAG A+FPF++PSS +SLTMWDA SS TL VMT A + VP+IL+YT+W
Sbjct 299 LACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWC 358
Query 361 YYKMWGVITNKHIEANSHSLY 381
Y+KM+G IT + IE N+HSLY
Sbjct 359 YWKMFGRITKEDIERNTHSLY 379
>P45020 Probable cytochrome oxidase subunit 2 [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=378
Score = 419 bits (1078), Expect = 3e-150
Identities = 203/381 (53%), Positives = 265/381 (70%), Gaps = 3/381 (1%)
Query 1 MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGN 60
MI+YE L+ IWWVLV VLLIGF++TDGFDMG A++P +GK + ERR INTIAPHWDGN
Sbjct 1 MIDYEFLRFIWWVLVIVLLIGFSVTDGFDMGVTALLPVIGKKEVERRIMINTIAPHWDGN 60
Query 61 QVWFITAGGALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD 120
QVW +TAGGA+FAAWP+VYAV+FSG Y AL+LVL ALFLRP+GF+YR+K++N WR+ WD
Sbjct 61 QVWLLTAGGAIFAAWPIVYAVSFSGFYIALVLVLAALFLRPLGFEYRAKIDNPTWRSVWD 120
Query 121 WALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSML 180
W L GG VPALVFGVAFGNL GVPF ++ + YTGSFF LLNPFALLCG++SLSML
Sbjct 121 WGLFAGGFVPALVFGVAFGNLLQGVPFHFNELTQVTYTGSFFELLNPFALLCGVISLSML 180
Query 181 CAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA 240
HG WL ++T L+ R+ +QI IV LI F+ AG WLY GY ID A
Sbjct 181 VTHGANWLQMKTTEALRDRARTVSQIGSIVTLIAFVLAGVWLY--SKDGYVVTSTIDHFA 238
Query 241 ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLA 300
+P+ K+V A W N++ P+ + P +A++ AL+ + ++ G +F ++L
Sbjct 239 PSSPMNKEVAVETGA-WFRNFNEMPILWIFPALAVVAALLNAAFSKANRCGFAFFFSALT 297
Query 301 IIGAILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWS 360
+ G I+TA ++FPF++PSS +P SL MWD+ SS TL +M + A +FV + L YT WS
Sbjct 298 MAGVIITAAVSMFPFVMPSSSHPEQSLLMWDSTSSELTLTLMLIFAVVFVVIALAYTIWS 357
Query 361 YYKMWGVITNKHIEANSHSLY 381
Y KM+G + I+ N HSLY
Sbjct 358 YSKMFGRLDANFIDKNKHSLY 378
>P26458 Cytochrome bd-II ubiquinol oxidase subunit 2 [Escherichia
coli (strain K12)]
Length=378
Score = 395 bits (1014), Expect = 1e-140
Identities = 187/381 (49%), Positives = 252/381 (66%), Gaps = 3/381 (1%)
Query 1 MIEYELLKIIWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGN 60
M +YE L+ IWW+L+GV+L+ F ++DGFDMG ++P V + D ERR IN++ HW+GN
Sbjct 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60
Query 61 QVWFITAGGALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWD 120
QVW I AGGALFAAWP VYA AFSG Y A++LVL +LF RP+ FDYR K+ + +WR WD
Sbjct 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120
Query 121 WALSIGGAVPALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSML 180
L IG VP +VFG+AFGNL LGVPF+ LR EY GSF+ LL PF LLCG++SL M+
Sbjct 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180
Query 181 CAHGGAWLMLRTDGVLKQRSAKATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNA 240
GG WL L+T GV+ RS AT+ ++ ++CF+ AG WL+ + G+ + D N
Sbjct 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVG-IDGF-VLLAQDANG 238
Query 241 ALNPLAKKVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSFTGTSLA 300
NPL K V A WMNN+ PV + P++ L+ ++ + + G F SL
Sbjct 239 PSNPLMKLVAVLPGA-WMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLM 297
Query 301 IIGAILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWS 360
G I TAG LFPF++PSS++P+SSLT+WD+ SS TL +M V IF+P++L+YT WS
Sbjct 298 QFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWS 357
Query 361 YYKMWGVITNKHIEANSHSLY 381
YYKMWG +T + + N + LY
Sbjct 358 YYKMWGRMTTETLRRNENELY 378
>P94365 Cytochrome bd ubiquinol oxidase subunit 2 [Bacillus subtilis
(strain 168)]
Length=338
Score = 188 bits (478), Expect = 2e-60
Identities = 122/358 (34%), Positives = 185/358 (52%), Gaps = 45/358 (13%)
Query 10 IWWVLVGVLLIGFALTDGFDMGSMAIMPFVGKTDSERRAAINTIAPHWDGNQVWFITAGG 69
+W++LV VL +GF +GFD G F+G + ERR INTI P WD N+VW +T G
Sbjct 7 LWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLLTGAG 66
Query 70 ALFAAWPMVYAVAFSGLYWALLLVLFALFLRPVGFDYRSKLENTQWRNSWDWALSIGGAV 129
A+FAA+P YA SG Y ++VL AL R V F++R K+++ +W WDW + G +
Sbjct 67 AIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFFGSLI 126
Query 130 PALVFGVAFGNLFLGVPFSLDDTLRSEYTGSFFALLNPFALLCGIVSLSMLC-AHGGAWL 188
P V GV F LF G+P D + + + +N +++L G V++++LC HG ++
Sbjct 127 PPFVLGVLFTTLFRGMPIDADMNIHAHVSD----YINVYSILGG-VTVTLLCFQHGLMFI 181
Query 189 MLRTDGVLKQRSAK-ATQIMGIVFLICFIAAGAWLYFAQVPGYSYAVPIDPNAALNPLAK 247
LRT G L+ R+ K A +IMG+VF+ A L FA + Y + PLA
Sbjct 182 TLRTIGDLQNRARKMAQKIMGVVFV-------AVLAFAALSAYQTDMFTRRGEITIPLA- 233
Query 248 KVVTNANAGWMNNYHLYPVSMLAPIVAIIGALVLIVGASKSKAGLSF--TGTSLAI-IGA 304
++ +I ++ V K K G +F TG LA+ +G
Sbjct 234 ------------------------VLIVICFMLAAVFIRKKKDGWTFGMTGAGLALTVGM 269
Query 305 ILTAGFALFPFLLPSSINPVSSLTMWDAVSSHRTLGVMTVAACIFVPLILIYTSWSYY 362
I +LFP ++ SS++ LT+ +A S +L VM++AA +P ++ WSYY
Sbjct 270 IF---ISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIWSYY 324
Lambda K H a alpha
0.328 0.140 0.458 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 672860
Database: d066fa5fa1a4b3658f837b7cb93f7835.SwissProt.fasta
Posted date: May 9, 2024 3:00 AM
Number of letters in database: 2,231
Number of sequences in database: 6
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
