BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 6bee913a50470a02b98ea3a8b2f475d3.SwissProt.fasta
18 sequences; 6,064 total letters
Query= ACIAD2305
Length=144
Score E
Sequences producing significant alignments: (Bits) Value
Q9LEV3 CBS domain-containing protein CBSX3, mitochondrial [Arabid... 104 4e-32
P54606 CBS domain-containing protein YhcV [Bacillus subtilis (str... 80.1 2e-23
P50100 Uncharacterized protein MK0525 [Methanopyrus kandleri (str... 76.3 2e-21
Q58069 Uncharacterized protein MJ0653 [Methanocaldococcus jannasc... 73.2 4e-20
O58045 Inosine-5'-monophosphate dehydrogenase [Pyrococcus horikos... 74.7 8e-20
P42851 Inosine-5'-monophosphate dehydrogenase [Pyrococcus furiosu... 73.9 2e-19
O34682 Uncharacterized protein YlbB [Bacillus subtilis (strain 168)] 68.6 8e-19
Q9UY49 Inosine-5'-monophosphate dehydrogenase [Pyrococcus abyssi ... 70.1 3e-18
P15889 Uncharacterized 33.4 kDa protein in ribosomal RNA operon [... 63.9 3e-16
Q58629 Uncharacterized protein MJ1232 [Methanocaldococcus jannasc... 60.8 4e-15
O23193 CBS domain-containing protein CBSX1, chloroplastic [Arabid... 55.5 2e-13
Q5NGP7 Arabinose 5-phosphate isomerase KdsD [Francisella tularens... 52.0 6e-12
P9WJA3 Hypoxic response protein 1 [Mycobacterium tuberculosis (st... 49.3 2e-11
O34992 Glycine betaine/carnitine/choline transport ATP-binding pr... 49.7 4e-11
Q45460 Choline transport ATP-binding protein OpuBA [Bacillus subt... 48.1 1e-10
P45395 Arabinose 5-phosphate isomerase KdsD [Escherichia coli (st... 45.8 8e-10
Q57564 L-aspartate semialdehyde sulfurtransferase [Methanocaldoco... 45.8 9e-10
O66728 A-adding tRNA nucleotidyltransferase [Aquifex aeolicus (st... 35.8 3e-06
>Q9LEV3 CBS domain-containing protein CBSX3, mitochondrial [Arabidopsis
thaliana]
Length=206
Score = 104 bits (259), Expect = 4e-32
Identities = 53/127 (42%), Positives = 84/127 (66%), Gaps = 5/127 (4%)
Query 22 DASVLEAISLMADKGIGAIVVV---EKESVVGILSERDYTRKVELMDRSSNSTVVSEIMT 78
D +V +A+ M +GA+VVV E++++ GI++ERDY RK+ + RSS ST V +IMT
Sbjct 78 DDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMT 137
Query 79 P--KVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDLVKAAMEEQRQLIEQ 136
K+ TV V +QLMTD +RH+PV++ ++G++SIGD+V+A + E R+ +++
Sbjct 138 EENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQR 197
Query 137 LKQYISG 143
L YI G
Sbjct 198 LNAYIQG 204
Score = 37.4 bits (85), Expect = 6e-07
Identities = 19/60 (32%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query 2 TNVAQVLNDKREHVVYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKV 61
T V ++ + E+ + T++P+ VL A+ LM D I I V++ + ++G++S D R V
Sbjct 130 TKVGDIMTE--ENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAV 187
>P54606 CBS domain-containing protein YhcV [Bacillus subtilis
(strain 168)]
Length=140
Score = 80.1 bits (196), Expect = 2e-23
Identities = 41/115 (36%), Positives = 70/115 (61%), Gaps = 1/115 (1%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSE 75
V T+SP+ ++ EA SLM +GAI VVE+ + G+L++RD + R T VSE
Sbjct 12 VATVSPNQTIQEAASLMKQHNVGAIPVVEQGVLKGMLTDRDIALRTTAQGRDGQ-TPVSE 70
Query 76 IMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDLVKAAMEEQ 130
+M+ ++ + + + S+ED QLM +R LP+V+ + L+G++++GDL M +
Sbjct 71 VMSTELVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGDLAVNQMSNE 125
>P50100 Uncharacterized protein MK0525 [Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)]
Length=196
Score = 76.3 bits (186), Expect = 2e-21
Identities = 43/133 (32%), Positives = 79/133 (59%), Gaps = 9/133 (7%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVV-EKESVVGILSERDYTRKVELMDRSSNSTVVS 74
V T SP + +E M + GIG++V+V EK+ +GI++ERD KV ++ + +
Sbjct 14 VITGSPTETAVEIAYKMREHGIGSVVIVNEKDEPIGIITERDLVIKVVSQGKNPDEVIAR 73
Query 75 EIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVV-EHDKLLGLISIGD-------LVKAA 126
+IM+ V TV++ V + ++LM D+ +R LP+V ++ KL+G++++ D LV
Sbjct 74 DIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQDILQVEPYLVATI 133
Query 127 MEEQRQLIEQLKQ 139
EE ++ E+L++
Sbjct 134 EEEMKKFQEELEE 146
Score = 33.1 bits (74), Expect = 2e-05
Identities = 17/51 (33%), Positives = 28/51 (55%), Gaps = 1/51 (2%)
Query 7 VLNDKREHVVYTISPDASVLEAISLMADKGIGAIVVVEKE-SVVGILSERD 56
+ D V T+ D V EA+ LM DKGI + +V+ ++GI++ +D
Sbjct 71 IARDIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQD 121
>Q58069 Uncharacterized protein MJ0653 [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440)]
Length=194
Score = 73.2 bits (178), Expect = 4e-20
Identities = 34/127 (27%), Positives = 74/127 (58%), Gaps = 4/127 (3%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSE 75
V + + S+ + ++M + IGA+V+VE +GI++ERD ++V + + E
Sbjct 17 VIKATKNMSIYDIANIMTENNIGAVVIVENNKPIGIVTERDIVKRVVSKNLKPKDVLAEE 76
Query 76 IMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDLVKAAMEEQRQLIE 135
+M+ K+ T+ ++ S+ + ++M ++ LPVV+ +L+G+++ D+V+ + E L+E
Sbjct 77 VMSKKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSDIVRVSPE----LLE 132
Query 136 QLKQYIS 142
+ +Y S
Sbjct 133 IVIEYAS 139
Score = 38.5 bits (88), Expect = 2e-07
Identities = 17/57 (30%), Positives = 36/57 (63%), Gaps = 0/57 (0%)
Query 73 VSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDLVKAAMEE 129
VSE+M+ V K+ S+ D +MT+ ++ + +VE++K +G+++ D+VK + +
Sbjct 9 VSEVMSFPVIKATKNMSIYDIANIMTENNIGAVVIVENNKPIGIVTERDIVKRVVSK 65
>O58045 Inosine-5'-monophosphate dehydrogenase [Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3)]
Length=486
Score = 74.7 bits (182), Expect = 8e-20
Identities = 45/109 (41%), Positives = 66/109 (61%), Gaps = 9/109 (8%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSE 75
V TI+PD +V A+ LM GI + VVE E VVGI++++D + +V E
Sbjct 103 VITIAPDETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDIAAR--------EGKLVKE 154
Query 76 IMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVV-EHDKLLGLISIGDLV 123
+MT +V TV +S VE+ L++M + + LPVV E KL+GLI++ DLV
Sbjct 155 LMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLV 203
Score = 32.0 bits (71), Expect = 5e-05
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 14/95 (15%)
Query 28 AISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSEIMTPKVFTVDKS 87
A+++ + G+G I +GI + + ++V+ +R ++ V T+
Sbjct 64 AVAMAREGGLGVI-----HRNMGIEEQVEQVKRVKRAER---------LIVEDVITIAPD 109
Query 88 YSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDL 122
+V+ L LM + LPVVE +K++G+I+ D+
Sbjct 110 ETVDFALFLMEKHGIDGLPVVEDEKVVGIITKKDI 144
>P42851 Inosine-5'-monophosphate dehydrogenase [Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)]
Length=485
Score = 73.9 bits (180), Expect = 2e-19
Identities = 43/109 (39%), Positives = 66/109 (61%), Gaps = 9/109 (8%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSE 75
V TI+PD ++ A+ LM GI + VVE++ VVGI++++D + V E
Sbjct 103 VITIAPDETIDYALFLMEKHGIDGLPVVEEDRVVGIITKKDIAAR--------EGRTVKE 154
Query 76 IMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHD-KLLGLISIGDLV 123
+MT +V TV +S VE+ L++M + + LPVV D KL+GLI++ DLV
Sbjct 155 LMTREVITVPESVDVEEALKIMMENRIDRLPVVNEDGKLVGLITMSDLV 203
>O34682 Uncharacterized protein YlbB [Bacillus subtilis (strain
168)]
Length=148
Score = 68.6 bits (166), Expect = 8e-19
Identities = 38/110 (35%), Positives = 67/110 (61%), Gaps = 3/110 (3%)
Query 24 SVLEAISLMADKGIGAIVVVEK--ESVVGILSERDYTRKVELMDRSSNSTVVSEIMTPKV 81
+V EA M D +GAI VV++ E++VGI+++RD + + + NS +++ MT K
Sbjct 20 NVYEAAVKMKDANVGAIPVVDEDGETLVGIVTDRDLVLR-GIAIKKPNSQKITDAMTEKP 78
Query 82 FTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDLVKAAMEEQR 131
+V++ SV++ L LM LR +PV ++ KL G++++GDL + +R
Sbjct 79 VSVEEDASVDEVLHLMASHQLRRIPVTKNKKLTGIVTLGDLSLSEQTNER 128
Score = 28.9 bits (63), Expect = 4e-04
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 0/66 (0%)
Query 5 AQVLNDKREHVVYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELM 64
+Q + D ++ DASV E + LMA + I V + + + GI++ D + +
Sbjct 67 SQKITDAMTEKPVSVEEDASVDEVLHLMASHQLRRIPVTKNKKLTGIVTLGDLSLSEQTN 126
Query 65 DRSSNS 70
+R+ ++
Sbjct 127 ERAGSA 132
Score = 23.5 bits (49), Expect = 0.026
Identities = 15/55 (27%), Positives = 29/55 (53%), Gaps = 2/55 (4%)
Query 71 TVVSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHD--KLLGLISIGDLV 123
T + ++MT + +V + M D ++ +PVV+ D L+G+++ DLV
Sbjct 2 TKIKDLMTADLQYCTVLDNVYEAAVKMKDANVGAIPVVDEDGETLVGIVTDRDLV 56
>Q9UY49 Inosine-5'-monophosphate dehydrogenase [Pyrococcus abyssi
(strain GE5 / Orsay)]
Length=485
Score = 70.1 bits (170), Expect = 3e-18
Identities = 42/109 (39%), Positives = 65/109 (60%), Gaps = 9/109 (8%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSE 75
V TISP+ +V A+ LM I + VVE E VVGI+S++D + +V E
Sbjct 103 VITISPEETVDFALFLMEKHDIDGLPVVENEKVVGIISKKDIAAR--------EGKLVKE 154
Query 76 IMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHD-KLLGLISIGDLV 123
+MT V TV ++ VE+ L++M + + LPVV+ + +L+GLI++ DLV
Sbjct 155 LMTKDVITVPENIEVEEALKIMIENRIDRLPVVDKEGRLIGLITMSDLV 203
>P15889 Uncharacterized 33.4 kDa protein in ribosomal RNA operon
[Thermofilum pendens]
Length=300
Score = 63.9 bits (154), Expect = 3e-16
Identities = 42/125 (34%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKE-SVVGILSERDYTRKVELMDRSSNSTVVS 74
VYT S + E I LM ++GIGA+ VV+++ VVGI+SER + L+ V
Sbjct 96 VYTRS---DLREVIELMVERGIGALAVVDEDLRVVGIVSERHV---ISLLANVETHVKVK 149
Query 75 EIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDLVKAAMEEQRQLI 134
EIMT +V + S+ + +++M++R +R LP+V ++L G+++I D++ E ++
Sbjct 150 EIMTSEVVYLSPMDSLFEGMRVMSERRIRRLPLVSGEELRGIVTIKDVLSYVSRE--DVL 207
Query 135 EQLKQ 139
+LK+
Sbjct 208 ARLKE 212
Score = 33.5 bits (75), Expect = 1e-05
Identities = 18/41 (44%), Positives = 23/41 (56%), Gaps = 0/41 (0%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERD 56
V + D V A+SLM GIGA+VV GI++ERD
Sbjct 231 VLAVEDDVDVGLAVSLMKKHGIGALVVTHDGKPRGIVTERD 271
Score = 28.5 bits (62), Expect = 7e-04
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query 79 PKVFTVDKSYSVEDCLQLMTDRHLRHLPVV-EHDKLLGLISIGDLV 123
P + V S V D L M +RH+P+V E L G++S DLV
Sbjct 12 PPLAVVPSSSRVLDVLVAMGRNRVRHVPLVDERGVLKGMVSARDLV 57
>Q58629 Uncharacterized protein MJ1232 [Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440)]
Length=296
Score = 60.8 bits (146), Expect = 4e-15
Identities = 32/110 (29%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSE 75
V+TI+P+ ++ E L A+K I VV+ + +VG++S D ++ +D+ V E
Sbjct 180 VWTINPNCTLRETAKLFAEKYISGAPVVDNDKLVGVISLHDIAENIDNIDKK-----VKE 234
Query 76 IMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVV-EHDKLLGLISIGDLVK 124
+M V T+ K + D L++M ++ L +V +++K++G+I+ D++K
Sbjct 235 VMRRDVITIHKDEKIYDALKIMNKNNVGRLVIVDDNNKIVGIITRTDILK 284
Score = 40.0 bits (92), Expect = 8e-08
Identities = 20/79 (25%), Positives = 48/79 (61%), Gaps = 4/79 (5%)
Query 50 GILSERDYTRKVELMDRSSNSTV----VSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHL 105
G + RD ++ L+D S++ V ++ +V+T++ + ++ + +L ++++
Sbjct 145 GKIIGRDDIHRILLIDVLGVSSIPNIKVGDVGIKEVWTINPNCTLRETAKLFAEKYISGA 204
Query 106 PVVEHDKLLGLISIGDLVK 124
PVV++DKL+G+IS+ D+ +
Sbjct 205 PVVDNDKLVGVISLHDIAE 223
>O23193 CBS domain-containing protein CBSX1, chloroplastic [Arabidopsis
thaliana]
Length=236
Score = 55.5 bits (132), Expect = 2e-13
Identities = 35/144 (24%), Positives = 74/144 (51%), Gaps = 28/144 (19%)
Query 16 VYTISPDASVLEAISLMADKGIGAIVVVEKE-SVVGILSERDYT---------------- 58
++ + P +V EA+ L+ + I V++++ +VG++S+ D
Sbjct 87 LHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSISGSGRTENSMF 146
Query 59 ----------RKVELMDRSSNSTVVSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVV 108
V+ + +N +V ++MTP V++ ++ED +++ + R LPVV
Sbjct 147 PEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVV 206
Query 109 EHD-KLLGLISIGDLVKAAMEEQR 131
+ D KL+G+I+ G++V+AA++ +R
Sbjct 207 DSDGKLVGIITRGNVVRAALQIKR 230
Score = 26.9 bits (58), Expect = 0.002
Identities = 21/77 (27%), Positives = 39/77 (51%), Gaps = 20/77 (26%)
Query 67 SSNSTVVSEIMTPK------VFTVDK-------------SYSVEDCLQLMTDRHLRHLPV 107
S++S S +MT V+TV + + +V++ L+L+ + + PV
Sbjct 54 SASSAAGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPV 113
Query 108 VEHD-KLLGLISIGDLV 123
++ D KL+GL+S DL+
Sbjct 114 IDEDWKLVGLVSDYDLL 130
>Q5NGP7 Arabinose 5-phosphate isomerase KdsD [Francisella tularensis
subsp. tularensis (strain SCHU S4 / Schu 4)]
Length=327
Score = 52.0 bits (123), Expect = 6e-12
Identities = 29/107 (27%), Positives = 59/107 (55%), Gaps = 2/107 (2%)
Query 19 ISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSEIMT 78
+ P ++ +AI ++DKG+G +V E +++GI ++ D R E + ++ +SE+MT
Sbjct 218 VKPTDNIRKAILEISDKGVGNTLVAENNTLLGIFTDGDLRRMFE-AESFNSQRAISEVMT 276
Query 79 PKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEH-DKLLGLISIGDLVK 124
++ K L+ M + L VV++ +LG++++ DL+K
Sbjct 277 KNPKSISKEEMAITALEKMEKYEITSLAVVDNGHNILGIVTMHDLIK 323
>P9WJA3 Hypoxic response protein 1 [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=143
Score = 49.3 bits (116), Expect = 2e-11
Identities = 27/125 (22%), Positives = 61/125 (49%), Gaps = 5/125 (4%)
Query 1 MTNVAQVLNDKREHVVYTISPDASVLEAISLMADKGIGAIVVV-EKESVVGILSERDYTR 59
MT ++N V + ++ A M + IGA+ + + + + G+L++RD
Sbjct 1 MTTARDIMNAG----VTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVI 56
Query 60 KVELMDRSSNSTVVSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISI 119
K N+ E+ ++ VD + S+++ L +M + +R +PV+ +L+G+++
Sbjct 57 KGLAAGLDPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISEHRLVGIVTE 116
Query 120 GDLVK 124
D+ +
Sbjct 117 ADIAR 121
>O34992 Glycine betaine/carnitine/choline transport ATP-binding
protein OpuCA [Bacillus subtilis (strain 168)]
Length=380
Score = 49.7 bits (117), Expect = 4e-11
Identities = 28/108 (26%), Positives = 67/108 (62%), Gaps = 8/108 (7%)
Query 18 TISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRS-SNSTVVSEI 76
T+S D ++ +AI LM +K + +++VV++++V+ + Y VE++D++ +++V ++
Sbjct 261 TVSADKTLSQAIQLMREKRVDSLLVVDRQNVL-----KGYV-DVEMIDQNRKKASIVGDV 314
Query 77 MTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVV-EHDKLLGLISIGDLV 123
++TV K + D ++ + + ++++PVV E + L G+++ LV
Sbjct 315 YRSDIYTVQKGALLRDTVRKILKQGIKYVPVVDEQNHLAGIVTRASLV 362
Score = 22.7 bits (47), Expect = 0.063
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 13/64 (20%)
Query 51 ILSERDYTRKVELMDRSSNSTVVSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEH 110
I S D R ++M+R TP + DK+ S +QLM ++ + L VV+
Sbjct 242 IQSRPDIERVEQMMNR-----------TPVTVSADKTLS--QAIQLMREKRVDSLLVVDR 288
Query 111 DKLL 114
+L
Sbjct 289 QNVL 292
Score = 22.7 bits (47), Expect = 0.063
Identities = 11/50 (22%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query 5 AQVLNDKREHVVYTISPDASVLEAISLMADKGIGAIVVVEKES-VVGILS 53
A ++ D +YT+ A + + + + +GI + VV++++ + GI++
Sbjct 308 ASIVGDVYRSDIYTVQKGALLRDTVRKILKQGIKYVPVVDEQNHLAGIVT 357
>Q45460 Choline transport ATP-binding protein OpuBA [Bacillus
subtilis (strain 168)]
Length=381
Score = 48.1 bits (113), Expect = 1e-10
Identities = 34/122 (28%), Positives = 70/122 (57%), Gaps = 12/122 (10%)
Query 18 TISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRS-SNSTVVSEI 76
TI+ D ++ EAI LM + + +++VV E V+ + Y VE++D+ + +VSE+
Sbjct 262 TITADKTLSEAIQLMRQERVDSLLVVNDERVL-----QGYV-DVEIIDQCRKKANLVSEV 315
Query 77 MTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHD-KLLGLISIGDLVKAAME----EQR 131
+ ++TV + D ++ + R ++++PVV+ D +L+G+++ LV + E++
Sbjct 316 LHEDIYTVLGGTLLRDTVRKILKRGVKYVPVVDEDRRLIGIVTRASLVDIVYDSLWGEEK 375
Query 132 QL 133
QL
Sbjct 376 QL 377
Score = 24.3 bits (51), Expect = 0.019
Identities = 15/55 (27%), Positives = 29/55 (53%), Gaps = 2/55 (4%)
Query 62 ELMDRSSNSTV--VSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLL 114
E + +SS+ V V +IM + T+ ++ + +QLM + L VV +++L
Sbjct 239 ERLIQSSSPDVERVDQIMNTQPVTITADKTLSEAIQLMRQERVDSLLVVNDERVL 293
Score = 18.9 bits (37), Expect = 1.2
Identities = 8/50 (16%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query 5 AQVLNDKREHVVYTISPDASVLEAISLMADKGIGAIVVVEKE-SVVGILS 53
A ++++ +YT+ + + + + +G+ + VV+++ ++GI++
Sbjct 309 ANLVSEVLHEDIYTVLGGTLLRDTVRKILKRGVKYVPVVDEDRRLIGIVT 358
>P45395 Arabinose 5-phosphate isomerase KdsD [Escherichia coli
(strain K12)]
Length=328
Score = 45.8 bits (107), Expect = 8e-10
Identities = 29/110 (26%), Positives = 56/110 (51%), Gaps = 2/110 (2%)
Query 19 ISPDASVLEAISLMADKGIGAIVVVEKESVV-GILSERDYTRKVELMDRSSNSTVVSEIM 77
+ AS+ +A+ + K +G V+ + ++ GI ++ D R+V M ++++M
Sbjct 219 VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDL-RRVFDMGVDVRQLSIADVM 277
Query 78 TPKVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHDKLLGLISIGDLVKAAM 127
TP V + L LM RH+ + V + D LLG++ + DL++A +
Sbjct 278 TPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGV 327
>Q57564 L-aspartate semialdehyde sulfurtransferase [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 /
JCM 10045 / NBRC 100440)]
Length=509
Score = 45.8 bits (107), Expect = 9e-10
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query 58 TRKVELMDRSSNS------TVVSEIMTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVV-EH 110
T +V+ + R+ N T+V +I++ T + S+ + +++ ++ HLP+V EH
Sbjct 369 TERVDTLGRAENKPMKSPITLVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEH 428
Query 111 DKLLGLISIGDLVKAAMEEQRQLIE 135
KL+G+I+ D+ KA + ++ + E
Sbjct 429 GKLVGIITSWDIAKALAQNKKTIEE 453
Score = 37.4 bits (85), Expect = 8e-07
Identities = 24/107 (22%), Positives = 55/107 (51%), Gaps = 7/107 (7%)
Query 18 TISPDASVLEAISLMADKGIGAIVVVEKES-VVGILSERDYTRKVELMDRSSNSTVVSEI 76
T + S++EA ++ I + +V++ +VGI++ D + + + N + EI
Sbjct 400 TAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKAL-----AQNKKTIEEI 454
Query 77 MTPKVFTVDKSYSVEDCLQLMTDRHLRHLPVV-EHDKLLGLISIGDL 122
MT V T + V+ M+ ++ +PVV ++ +++G+++ D+
Sbjct 455 MTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDI 501
>O66728 A-adding tRNA nucleotidyltransferase [Aquifex aeolicus
(strain VF5)]
Length=824
Score = 35.8 bits (81), Expect = 3e-06
Identities = 19/46 (41%), Positives = 28/46 (61%), Gaps = 0/46 (0%)
Query 17 YTISPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVE 62
YT+SPDA V EA ++ G I VVE +VVG+++ D + V+
Sbjct 372 YTLSPDAPVWEAEEILTKFGQKLIPVVEDGTVVGVVTRLDILQAVK 417
Score = 33.9 bits (76), Expect = 1e-05
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (4%)
Query 20 SPDASVLEAISLMADKGIGAIVVVEKESVVGILSERDYTRKVELMDRSSNSTVVSEIMTP 79
S D V E +S G V+ E+V +ER + R V +IM
Sbjct 251 SEDVDVGEILSHFGGGGHREAGAVKLENVS---AERIKELIKAFLKRKYVKLKVRDIMNT 307
Query 80 KVFTVDKSYSVEDCLQLMTDRHLRHLPVVEHD-KLLGLISIGDLVK 124
F +++ SV+D L +++R + + PV+ + KL+G+IS L+K
Sbjct 308 PPFVLEEHVSVKDALTELSERGIANAPVINREGKLVGIISKKALLK 353
Score = 18.5 bits (36), Expect = 1.6
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query 15 VVYTISPDASVLEAISLMADKGIGAIVVVEKESVVGI-LSERDYT 58
+VY P V E + G +VVE+ GI ++ RD T
Sbjct 87 IVYDHHPIGDVKEFEGKIEKVGAATTLVVEEIKEKGIDINPRDAT 131
Lambda K H a alpha
0.321 0.135 0.363 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 548578
Database: 6bee913a50470a02b98ea3a8b2f475d3.SwissProt.fasta
Posted date: May 20, 2024 3:35 AM
Number of letters in database: 6,064
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
