BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: dfa36707183226ff9875e47c51b878ce.SwissProt.fasta
11 sequences; 4,684 total letters
Query= ACIAD2310
Length=399
Score E
Sequences producing significant alignments: (Bits) Value
A6V8R6 Ribonuclease D [Pseudomonas aeruginosa (strain PA7)] 171 9e-53
A0KXU5 Ribonuclease D [Shewanella sp. (strain ANA-3)] 156 3e-47
A1SVE6 Ribonuclease D [Psychromonas ingrahamii (strain DSM 17664 ... 152 1e-45
P44442 Ribonuclease D [Haemophilus influenzae (strain ATCC 51907 ... 146 2e-43
C6C608 Ribonuclease D [Musicola paradisiaca (strain Ech703)] 137 4e-40
Q6G329 Ribonuclease D [Bartonella henselae (strain ATCC 49882 / D... 135 2e-39
A8GFH0 Ribonuclease D [Serratia proteamaculans (strain 568)] 132 2e-38
C9XUE4 Ribonuclease D [Cronobacter turicensis (strain DSM 18703 /... 130 7e-38
Q5GZ75 Ribonuclease D [Xanthomonas oryzae pv. oryzae (strain KACC... 122 8e-35
P09155 Ribonuclease D [Escherichia coli (strain K12)] 120 7e-34
A9LLI8 Protein RRP6-like 3 [Arabidopsis thaliana] 67.4 2e-15
>A6V8R6 Ribonuclease D [Pseudomonas aeruginosa (strain PA7)]
Length=376
Score = 171 bits (432), Expect = 9e-53
Identities = 114/378 (30%), Positives = 200/378 (53%), Gaps = 16/378 (4%)
Query 19 MFQFIQQQDQLADVLSLMDQCSIY------GLDTEFIKVDTLWPKLGVFQINLNGQVYLL 72
MF + + D SL QC + LDTEF++VDT +P G+ Q+ + +L+
Sbjct 1 MFVTAPEIQWIRDDASLAQQCREWRTQPYLALDTEFMRVDTFYPAAGLVQVGDGRREWLI 60
Query 73 DGTAL-DLSIFWQKLYASKQ-NVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGL 130
D + D F + L + V HAC ED+++ + +FDTQ+ ++LG
Sbjct 61 DPLLVRDWGPFAELLEDPRVVKVLHACSEDLEVFLRLTGSLPVP-LFDTQLAAAYLGMAH 119
Query 131 QVSYQAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQ 190
+ Y +K VLDI++ KD+TRSDWL RPL++ Q++YAA+DV +L ++ + +L E++
Sbjct 120 SMGYSKLVKEVLDIDLPKDETRSDWLQRPLTEMQMRYAADDVQHLAQVYLALDARLSEEK 179
Query 191 LYDYVLEDCRHLTQEIGTDTPQHLLYTDVG-NYRHSRRQLMQLQQLMVWREQLIKAINQP 249
++LED L + ++ Y +V +R +QL L++L WRE+ + N+P
Sbjct 180 -RAWLLEDGAELVANLCRESDPREAYREVKLGWRLRPQQLAVLRELCAWREEQARLRNRP 238
Query 250 RSFILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLL---KFLPEEHEWPL 306
R+ +LR T+ L P+N L+ ++++ P +R+ G +++L+ LP+ EWP
Sbjct 239 RNHVLRERTLWPLARLLPKNKTDLAAIEDMHPRTVRQDGDFLIELIAEAARLPQS-EWPE 297
Query 307 RMAKPIRHSSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEY 366
+ +P+ + + + ++ E + E+++RKK L AL + H ELP+
Sbjct 298 ALPEPLPPEVTPLLKSLRAIGQREAETLGMAPELMLRKKILEALLKSGYPH-GPYELPDS 356
Query 367 LLGWRYEMLTRPLIQILK 384
L GWR E + + L+ L+
Sbjct 357 LRGWRRERMGQALLNALE 374
>A0KXU5 Ribonuclease D [Shewanella sp. (strain ANA-3)]
Length=388
Score = 156 bits (395), Expect = 3e-47
Identities = 103/370 (28%), Positives = 188/370 (51%), Gaps = 9/370 (2%)
Query 18 NMFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTAL 77
++FQ++ + L +++ Q + LDTEF++ T + KLG+ Q + L+D AL
Sbjct 21 SVFQYVSDEASLNALVAQYQQSPLLVLDTEFVRTRTYYAKLGLIQAYDGKTLALIDPVAL 80
Query 78 -DLSIFWQKLYASKQNVF---HACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVS 133
DLS FW L N+ H+C ED+++ HY Q++ +FD+Q+ S G G +
Sbjct 81 PDLSAFWSLL--DNPNIIKLVHSCSEDLEVFAHYGQRQPTP-LFDSQIAASLCGMGHGLG 137
Query 134 YQAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYD 193
Y ++ L I+K ++R+DW+ RPL++ QL YAANDVLYL +L Q+ +L+ +
Sbjct 138 YAKLVETCLGEVIDKGESRTDWMRRPLTEAQLSYAANDVLYLYQLYPQLADKLKAQDRLG 197
Query 194 YVLEDCRHLTQEIGTDTPQHLLYTDVGN-YRHSRRQLMQLQQLMVWREQLIKAINQPRSF 252
++ E+ +T+ Y V N ++ + QL L+ L WR + A + F
Sbjct 198 WLYEEGERMTEGRLATPDMDTAYLRVKNAFQLTEHQLAYLKVLAKWRLEKALARDLALGF 257
Query 253 ILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPEEHEWPLRMAKPI 312
++++ +I L +K P++ L ++ ++ R HGK IL +++ + L +
Sbjct 258 VIKDHGLIALAKKQPKSMGDLLKLNDLTEQEKRIHGKDILRVMQTADLSNPPELVDVLAL 317
Query 313 RHSSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRY 372
+ + + + ++ EQ IP E+L K+ ++ Y + + + ELP L GWR
Sbjct 318 KPGYKSAFKNIKTCLSELCEQHAIPMEMLGSKRHIHE-YLQWRWDKQQGELPTVLSGWRG 376
Query 373 EMLTRPLIQI 382
++ L ++
Sbjct 377 QIAAESLAKL 386
>A1SVE6 Ribonuclease D [Psychromonas ingrahamii (strain DSM 17664
/ CCUG 51855 / 37)]
Length=369
Score = 152 bits (383), Expect = 1e-45
Identities = 105/366 (29%), Positives = 189/366 (52%), Gaps = 15/366 (4%)
Query 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTAL-D 78
F+ I QL D ++ +D I LDTEF++ T LG+ QI+ N Q+ L+D A+ D
Sbjct 3 FEIITTTAQLHDFIATLDGSPI-SLDTEFVRTRTYAANLGLLQISQNTQITLIDPIAVGD 61
Query 79 LSIFWQKLYASKQNVFHACGEDIDLIY-HYAQQKFLENVFDTQVGLSFLGHGLQVSYQAA 137
LS FWQ + +K + HA ED+++I H F +FDTQ+ SFL G + Y
Sbjct 62 LSSFWQAI-DNKNIILHASSEDLEIIRDHKGDLNF--TLFDTQIACSFLNMGASLGYAKM 118
Query 138 LKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLE 197
++ + + ++K ++R+DW ARPLS++Q+ YA DVLYL ++++ QL+ K+++ + +
Sbjct 119 VETLEAVIVDKGESRTDWCARPLSEKQINYAGVDVLYLQPCLEKLQQQLENKKMFPFFEQ 178
Query 198 DCRH-LTQEIGTDTPQHLLYTDVGNYRHSRRQLMQLQQLMVWREQLIKAINQPRSFILRN 256
+C+ L Q++ P ++ R+ L ++ L WR + N +F+++
Sbjct 179 ECQSVLAQKMVKQDPDKAYKLLNNLFKLDRQGLAIIKALAKWRLLTAQERNLALNFVVKA 238
Query 257 STMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLK--FLPEEHEWPLRMAKPIRH 314
+ L P + L ++ + PN IR HG+ IL ++ +E +P + + +
Sbjct 239 DHLWLLAYYQPTSLDDLRRL-NLLPNEIRIHGQQILTIMTQVISQDESTYPPLVNRLVDF 297
Query 315 SS-QDVTDQMTQLIEQVVEQTQIPKEVLIRKK----WLNALYQHVVFHRSEDELPEYLLG 369
+ + M I+ E+ +P E+L K+ +L+ L++ R P+ L G
Sbjct 298 PAYKSTVKSMRDKIQLCAEKYDLPLELLASKRVINEYLSWLWKLTNLQRQTANKPKLLTG 357
Query 370 WRYEML 375
WR+E++
Sbjct 358 WRFELI 363
>P44442 Ribonuclease D [Haemophilus influenzae (strain ATCC 51907
/ DSM 11121 / KW20 / Rd)]
Length=399
Score = 146 bits (369), Expect = 2e-43
Identities = 116/381 (30%), Positives = 194/381 (51%), Gaps = 27/381 (7%)
Query 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTAL-D 78
F+ + L +V +L Q S LDTEF++V T +PKLG+ Q+ V L+D A+ D
Sbjct 30 FRVVTDNTALLEVCNLAQQKSAVALDTEFMRVSTYFPKLGLIQLYDGEHVSLIDPLAITD 89
Query 79 LSIFWQKLYASKQ-NVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAA 137
S F L K + H+C ED+ L++ + + DTQ+ FLG G
Sbjct 90 FSPFVALLANPKVLKILHSCSEDL-LVFLQEFDQLPRPMIDTQIMARFLGLGTSAGLAKL 148
Query 138 LKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLE 197
+ L++EI+K TR++W+ RPLSD QL+YAA DV YLL L ++ +L + V +
Sbjct 149 AQQYLNVEIDKGATRTNWIKRPLSDIQLQYAAGDVWYLLPLYHILEKELAKTPWEQAVRD 208
Query 198 DCR------HLTQEIGTDTPQHLLYTDVGN-YRHSRRQLMQLQQLMVWREQLIKAINQPR 250
DC H QE ++ Y D+ N ++ + +L +L+ L WR+ + +
Sbjct 209 DCELVLAKTHKLQERDSEK----AYLDIPNAWKLNPLELSRLRVLAQWRQNVAIERDLAL 264
Query 251 SFILRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLP--EEHEWPLRM 308
S+I+++ + + + NPRNT ++ ++ + N +R GK IL LL +++P
Sbjct 265 SYIVKSEHLWKVAKNNPRNTSEMLEM-GLTENEVRVRGKEILQLLSQARRISSNDYP--- 320
Query 309 AKPIRHSSQDVTDQMT-QLIEQVVEQTQ---IPKEVLIRKKWLNALYQHV-VFHRSEDEL 363
K I S+D + T +L+++ V + E++ K+ L L + V + S+D+
Sbjct 321 -KSIERISEDPRYKKTIRLLQEKVNSLTPEGLTPEIVASKRTLEELIKWVWKYDCSQDKR 379
Query 364 PEYLLGWRYEMLTRPLIQILK 384
PE L+GWR + + L+ LK
Sbjct 380 PELLIGWR-KPIGEKLVDALK 399
Score = 17.3 bits (33), Expect = 9.5
Identities = 6/13 (46%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 17 ENMFQFIQQQDQL 29
E++ F+Q+ DQL
Sbjct 111 EDLLVFLQEFDQL 123
>C6C608 Ribonuclease D [Musicola paradisiaca (strain Ech703)]
Length=374
Score = 137 bits (344), Expect = 4e-40
Identities = 102/373 (27%), Positives = 184/373 (49%), Gaps = 14/373 (4%)
Query 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDL 79
+Q I D L++V S + LDTEF++ T +P+LG+ Q+ ++ L+D ++ +
Sbjct 3 YQLITTDDGLSEVCSQARRMPQVALDTEFVRTRTYYPQLGLIQLFDGERLSLIDPLSITV 62
Query 80 SIFWQK-----LYASKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSY 134
WQ L + HA ED+++ + A DTQ+ ++FLG L +
Sbjct 63 ---WQPFCDLLLDPAVTKYLHAGSEDLEVFLN-AFGLLPTPFVDTQILVAFLGKPLSYGF 118
Query 135 QAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDY 194
A + + + ++K ++R+DWLARPLS++Q +YAA DV YLL ++ ++ + ++
Sbjct 119 AALVADYMQVTLDKSESRTDWLARPLSEKQCQYAAADVYYLLPMAIRLVEETTSAGWWEA 178
Query 195 VLEDCRHLTQEIGTDTPQHLLYTDVGN-YRHSRRQLMQLQQLMVWREQLIKAINQPRSFI 253
L++CR L Q Y ++GN ++ R L LQ+L WR + + + +FI
Sbjct 179 ALDECRQLCQRKQDVLAPEQAYREIGNAWQLKGRHLACLQKLADWRLRKARERDSAVNFI 238
Query 254 LRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLP--EEHEWPLRMAKP 311
+R + + P + +L + P IR HGKT+L+L+ + E+P +
Sbjct 239 VREEHLGQVARYLPGSLGELGALGLSGPE-IRYHGKTLLELVAETQTMDAAEYPEPVINL 297
Query 312 IRHSS-QDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGW 370
I + + ++ L++Q E++ + E+L ++ +N L + +PE L GW
Sbjct 298 IDYPGYKKAFREIKDLVQQQAERSGLSAELLASRRQINRLLSWHWKLAPQTHVPELLSGW 357
Query 371 RYEMLTRPLIQIL 383
R + PL IL
Sbjct 358 RGRLFGEPLKGIL 370
>Q6G329 Ribonuclease D [Bartonella henselae (strain ATCC 49882
/ DSM 28221 / CCUG 30454 / Houston 1)]
Length=406
Score = 135 bits (341), Expect = 2e-39
Identities = 100/394 (25%), Positives = 182/394 (46%), Gaps = 29/394 (7%)
Query 19 MFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTA-- 76
M + I Q L L+ + +DTEFI+ T WP+L + Q+ L+D +
Sbjct 23 MMKLITQTTDLEIALATLRNSDFVTIDTEFIRETTFWPQLCLIQLASPDTTVLIDPISQD 82
Query 77 LDLSIFWQKLYASK-QNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQ 135
+DL F+ + K VFHA +DI+ IYH +FDTQ+ S G G +SY
Sbjct 83 IDLKPFFDLMVNKKIVKVFHAARQDIETIYHLGGV-IPSPLFDTQIAGSICGFGDSISYD 141
Query 136 AALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYV 195
++ +++K +DW RPLS++QL YA DV YL + +K QL++ + ++
Sbjct 142 QIVQRCTGYQLDKSSRFTDWSFRPLSEKQLLYALADVTYLRDVYLLLKKQLEKNKRTHWM 201
Query 196 LEDCRHLTQEIGTDTPQHLLYTDVGNYRHSRRQLMQLQQLMVWREQLIKAINQPRSFILR 255
++ L + D P++ + V R+L LQ++ WRE+ + N PR I++
Sbjct 202 DDEIAVLLEPKTYDMPENEAWKKVKGKIKKPRELAVLQKIAAWRERKARQYNIPRRHIIK 261
Query 256 NSTMIDLVEKNPRNTFQLSQVKEIRPN------------VIREHGKTILDLLKFLPEEHE 303
+ +I++ + P++ L +++ + N + E + L L LP+ +
Sbjct 262 DECLIEIAIQQPKDEADLKRLRSLNKNWDKFSIAHTLIKAVHEGLEVDLATLPALPKHN- 320
Query 304 WPLRMAKPIRHSSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDEL 363
P+ +S V D + L++ V + I +++ L + + + +
Sbjct 321 -------PLNETSSAVIDLLKVLLKLVANENGIAPKIIATSNDLEKIANGCI----KKNI 369
Query 364 PEYLLGWRYEMLTRPLIQILKQDVKYLSTQMKID 397
P + GWRYE+ + Q+LK + + + KI+
Sbjct 370 PA-MNGWRYEIFGQKAEQMLKGKIGFYLSNGKIN 402
>A8GFH0 Ribonuclease D [Serratia proteamaculans (strain 568)]
Length=373
Score = 132 bits (333), Expect = 2e-38
Identities = 102/371 (27%), Positives = 177/371 (48%), Gaps = 8/371 (2%)
Query 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDL 79
+Q I L V + + LDTEF++ T +P+LG+ Q+ Q+ L+D +
Sbjct 3 YQLITTDAGLQQVCDQAKKHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLPIKQ 62
Query 80 SIFWQKLYASKQNV--FHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAA 137
+ +L ++ Q V HA ED+++ + A + + DTQ+ +F G + +
Sbjct 63 WQPFIELLSNTQVVKFLHAGSEDLEVFLN-AFKTLPTPMVDTQILAAFTGRPMSCGFATL 121
Query 138 LKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLE 197
+ +++E++K + R+DWLARPL+++Q YAA DV YLL ++ ++ + +E
Sbjct 122 VAEYMEVELDKSEARTDWLARPLTEKQCVYAAADVFYLLPMAKRLVQETEEAGWTAAASN 181
Query 198 DCRHLTQEIGTDTPQHLLYTDVGNYRHSR-RQLMQLQQLMVWREQLIKAINQPRSFILRN 256
+C L Q L Y ++ N R RQL LQ+L WR + + + +F++R
Sbjct 182 ECLLLCQRRSETLAPELAYREITNAWQLRPRQLGCLQKLAEWRLRQARERDLAVNFVVRE 241
Query 257 STMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPEEHEWPLRMAKP---IR 313
+ + P + +L + P IR HGKT++ L+ E E L P +
Sbjct 242 ENLWQVARHMPTSLGELDSLGLSGPE-IRYHGKTLVALVAEAAELEESALPEPLPNLIDQ 300
Query 314 HSSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRYE 373
+ V ++ I EQ+ + E+L ++ +N L + D LPE + GWR +
Sbjct 301 PGYKKVFKEIKAAIVIASEQSGLSSELLASRRQINQLLNWHWKLKVGDNLPELVSGWRGD 360
Query 374 MLTRPLIQILK 384
+L PL ILK
Sbjct 361 LLAAPLQDILK 371
>C9XUE4 Ribonuclease D [Cronobacter turicensis (strain DSM 18703
/ CCUG 55852 / LMG 23827 / z3032)]
Length=369
Score = 130 bits (328), Expect = 7e-38
Identities = 101/369 (27%), Positives = 179/369 (49%), Gaps = 10/369 (3%)
Query 23 IQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDLSIF 82
I D LA + LDTEF++ T +P+LG+ Q+ V L+D +
Sbjct 2 ITTNDALAALCETARTQRALALDTEFVRTRTYYPQLGLIQLYDGENVALIDPLTITEWAP 61
Query 83 WQKLYASKQNV---FHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQAALK 139
+Q L QN+ HA ED++ ++ A + DTQV SF+GH L + ++
Sbjct 62 FQALLQD-QNITKFLHAGSEDLE-VFQNAFGMMPDPFIDTQVLASFVGHPLSCGFATLVE 119
Query 140 LVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVLEDC 199
+ ++K ++R+DWLARPL++ Q YAA DV YLL ++ ++ Q++E + +C
Sbjct 120 HHTGVALDKSESRTDWLARPLTERQCDYAAADVWYLLPIAHKLMEQVREAGWLTAAINEC 179
Query 200 RHLTQEIGTDTPQHLLYTDVGNYRHSR-RQLMQLQQLMVWREQLIKAINQPRSFILRNST 258
R +TQ G + ++ N R RQL L+ L WR + + + +F++R
Sbjct 180 RLMTQRRGEVLDPDEAWREITNAWQLRPRQLACLKLLAGWRLRKARERDMAVNFVVREEN 239
Query 259 MIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKFLPE--EHEWPLRMAKPI-RHS 315
+ + P + +L + + + IR HGKT+L L+ E P +A +
Sbjct 240 LWKVARHMPGSLGELDGL-GLSGSEIRFHGKTLLALVAQAQALLEDALPEPLANLVDMPG 298
Query 316 SQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRYEML 375
+ V ++ L+++ E +I E++ ++ +N L + +++LPE + GWR E+L
Sbjct 299 YRKVFKEIKALVQETSEAHKISAELMASRRQINQLLNWHWKLKPQNQLPELISGWRGELL 358
Query 376 TRPLIQILK 384
L +L+
Sbjct 359 GEALKTLLQ 367
>Q5GZ75 Ribonuclease D [Xanthomonas oryzae pv. oryzae (strain
KACC10331 / KXO85)]
Length=363
Score = 122 bits (306), Expect = 8e-35
Identities = 96/370 (26%), Positives = 169/370 (46%), Gaps = 15/370 (4%)
Query 19 MFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALD 78
M +I +L D L I GLDTEFI+ T WP+L + Q+ + ++ L+D
Sbjct 1 MPHWITHPSELTDRLQAARPARI-GLDTEFIRERTYWPQLALVQMAIGEEILLIDPLIPG 59
Query 79 LSIFWQKLYASKQ--NVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSYQA 136
++ ++ + V H+ ED+ + + A +FDTQ+ + G G + YQ
Sbjct 60 MNAALKEWLTATDIVKVMHSASEDL-VTFKCACGVLPRPLFDTQIAAALAGVGGGMGYQK 118
Query 137 ALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDYVL 196
++ V + K +TRSDW+ RPLS QL+YAA+DV YL + D++ +L E+ ++
Sbjct 119 LVQEVTGTLLTKGETRSDWMRRPLSPSQLEYAADDVRYLFAIHDELTRRLTEQNRLGWLA 178
Query 197 EDCRHLTQEIGTDTPQHLLYTDVGNYRHSRRQLM-QLQQLMVWREQLIKAINQPRSFILR 255
ED L + D + + + + +L +L+ WR+ + ++PRS+IL
Sbjct 179 EDAERLLATVEHDDGERWPHVSLRTAQFLEPAAQRRLLRLLRWRDLQARQSDRPRSWILD 238
Query 256 NSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLLKF-LPEEHEWPLRMAKPIRH 314
N L P + L Q + P R+ + D L LP+E PL A+
Sbjct 239 NEVASQLARFPPADLDALLQQFDKFPKAPRKLANAVWDALNTPLPDEEHAPL--AQAATD 296
Query 315 SSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGWRYEM 374
++ V ++ + Q + +P +L ++ L L + + P L WR +
Sbjct 297 GNKAVLKRLQDTVAQRSHELGLPDGLLASRRHLETLIE-------QRSWPAALGQWRRAV 349
Query 375 LTRPLIQILK 384
L ++ +L+
Sbjct 350 LEAQVMPLLE 359
>P09155 Ribonuclease D [Escherichia coli (strain K12)]
Length=375
Score = 120 bits (300), Expect = 7e-34
Identities = 94/375 (25%), Positives = 176/375 (47%), Gaps = 14/375 (4%)
Query 20 FQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLDGTALDL 79
+Q I D LA + + LDTEF++ T +P+LG+ Q+ + L+D +
Sbjct 3 YQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGIT- 61
Query 80 SIFWQKLYA-----SKQNVFHACGEDIDLIYHYAQQKFLENVFDTQVGLSFLGHGLQVSY 134
W L A S HA ED+++ + + + + DTQ+ +F G + +
Sbjct 62 --DWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGE-LPQPLIDTQILAAFCGRPMSWGF 118
Query 135 QAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEKQLYDY 194
+ ++ + ++K ++R+DWLARPL++ Q +YAA DV YLL ++ ++ + +
Sbjct 119 ASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPA 178
Query 195 VLEDCRHLTQEIGTDTPQHLLYTDVGN-YRHSRRQLMQLQQLMVWREQLIKAINQPRSFI 253
L++CR + + D+ N ++ RQL LQ L WR + + + +F+
Sbjct 179 ALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFV 238
Query 254 LRNSTMIDLVEKNPRNTFQLSQVKEIRPNVIREHGKTILDLL---KFLPEEHEWPLRMAK 310
+R + + P + +L + + + IR HGKT+L L+ + LPE+ +
Sbjct 239 VREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALPQPMLNL 297
Query 311 PIRHSSQDVTDQMTQLIEQVVEQTQIPKEVLIRKKWLNALYQHVVFHRSEDELPEYLLGW 370
+ + LI V E +I E+L ++ +N L + ++ LPE + GW
Sbjct 298 MDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGW 357
Query 371 RYEMLTRPLIQILKQ 385
R E++ L +L++
Sbjct 358 RGELMAEALHNLLQE 372
>A9LLI8 Protein RRP6-like 3 [Arabidopsis thaliana]
Length=892
Score = 67.4 bits (163), Expect = 2e-15
Identities = 62/289 (21%), Positives = 129/289 (45%), Gaps = 32/289 (11%)
Query 14 LNQENMFQFIQQQDQLADVLSLMDQCSIYGLDTEFIKVDTLWPKLGVFQINLNGQVYLLD 73
L + + +++ + QL ++ ++ + ++ +DTE + + + QI+ + + +L+D
Sbjct 113 LEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEEDFLVD 172
Query 74 GTAL-DLSIFWQKLYASKQ--NVFHACGEDIDLIYHYAQ-QKFLENVFDTQVGLSFLGHG 129
AL D+ + +++ VFH G D D+I+ ++ N+FDT L
Sbjct 173 TIALHDVMSILRPVFSDPNICKVFH--GADNDVIWLQRDFHIYVVNMFDTAKACEVLSKP 230
Query 130 LQVSYQAALKLVLDIEIEKDQTRSDWLARPLSDEQLKYAANDVLYLLKLSDQIKHQLQEK 189
Q S L+ V + K R DW RPLS+E ++YA D YLL ++D + +L++
Sbjct 231 -QRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQL 289
Query 190 QLYD---------YVLEDCRH--------LTQEI----GTDTPQHLLYTDVGNYRHSRRQ 228
D ++LE R T+E G+ ++Y + +
Sbjct 290 ATEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNI 349
Query 229 LMQLQQLM----VWREQLIKAINQPRSFILRNSTMIDLVEKNPRNTFQL 273
+ ++L+ WR+ + + ++ ++L + ++ L K P T ++
Sbjct 350 SLNAEELVRKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEI 398
Score = 17.3 bits (33), Expect = 10.0
Identities = 7/29 (24%), Positives = 15/29 (52%), Gaps = 4/29 (14%)
Query 89 SKQNVFHACGEDIDLIYHYAQQKFLENVF 117
+K+N+ CGE HY + + + + +
Sbjct 578 TKRNICVGCGEG----KHYLRYRIIPSCY 602
Score = 17.3 bits (33), Expect = 10.0
Identities = 6/13 (46%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 277 KEIRPNVIREHGK 289
K+I ++REHG+
Sbjct 828 KQIVEYLLREHGE 840
Lambda K H a alpha
0.324 0.138 0.416 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1458756
Database: dfa36707183226ff9875e47c51b878ce.SwissProt.fasta
Posted date: May 20, 2024 3:33 AM
Number of letters in database: 4,684
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
