BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d9e0bf7ee98dd37c2fd9745a7d037d5b.SwissProt.fasta
8 sequences; 3,657 total letters
Query= ACIAD2315
Length=368
Score E
Sequences producing significant alignments: (Bits) Value
I3R9Z4 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Halofera... 148 9e-44
G0HQZ6 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Haloarcu... 121 3e-34
Q5UYM0 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Haloarcu... 121 4e-34
P45370 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Allochro... 102 8e-28
P45366 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Thiocyst... 95.5 2e-25
P73390 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Synechoc... 94.4 5e-25
Q9ZHI2 Poly(3-hydroxyalkanoate) polymerase [Chromobacterium viola... 67.8 8e-16
P26496 Poly(3-hydroxyalkanoate) polymerase 2 [Pseudomonas oleovor... 52.8 5e-11
>I3R9Z4 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Haloferax
mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866
/ NBRC 14739 / NCIMB 2177 / R-4)]
Length=492
Score = 148 bits (373), Expect = 9e-44
Identities = 93/328 (28%), Positives = 167/328 (51%), Gaps = 13/328 (4%)
Query 37 TPYEVIAEFDQTKIRYYAAQ-QRLYKEPLVFVAPLAINMDIYDLYPYRSLIQYFQAQGFD 95
TP EV+ + ++ ++ +Y ++ + Y P++ V L I DL P RS++Q QGFD
Sbjct 43 TPNEVVYKENKLRLLHYESKTETQYDVPILIVYALINRPYILDLQPDRSVVQTLLEQGFD 102
Query 96 VYLIDWGRLTYQDRHLNFLSFIRKALPEYIQVIRTHSQSDKISLHGWSMAGIFVLLYSAL 155
VYLIDWG + D HL ++ + + + ++R S D I+L G+ M G ++Y+AL
Sbjct 103 VYLIDWGEPSRLDTHLTLDDYVTRYIDNCVDIVRDRSGQDSINLLGYCMGGTMSVMYAAL 162
Query 156 NQPNHVKNLIVLGSPIDSYASGRIGKLYQFVHKSIASNKKLQTRLYSGLPKRLIHTPGIL 215
P V+NL ++ + + +G G L ++ + S K + T + +P +
Sbjct 163 -FPEKVRNLGLMAAGLVFDDTG--GVLERWGDEQYYSPKAV-TDAFGNVPSEFLD----- 213
Query 216 NALGFKILDP-KGWIDGHIQLLKNLENKKLVQEHATLGHFLNNMIDYPAGINQDMLFNVW 274
+GF ++DP + ++ +++L +N+EN+ V+ + + +L++ ID + L +V+
Sbjct 214 --VGFALMDPVENFVTKYVRLFENVENESFVENFSRMEQWLSDGIDVAGETYKQFLEDVY 271
Query 275 LQNPLKHGAIRLQDQVIELKNIQSSLLIGAGRSDQLVTADAVKPLTQLTSSSDVTFTLIP 334
QN L + L + ++L+ ++ +L G D L+ +A KP L S D
Sbjct 272 QQNKLAQNELMLDGKQVDLERLEMPILQIVGEYDHLIPPEASKPFNDLVPSEDTEVIEGA 331
Query 335 GGHLGLMSSQASSEEFWPMFKHWLAQRS 362
GH+GL S S + WP W A+RS
Sbjct 332 TGHIGLSVSSRSHGDLWPAVSDWFAERS 359
>G0HQZ6 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Haloarcula
hispanica (strain ATCC 33960 / DSM 4426 / JCM 8911 /
NBRC 102182 / NCIMB 2187 / VKM B-1755)]
Length=474
Score = 121 bits (304), Expect = 3e-34
Identities = 88/340 (26%), Positives = 156/340 (46%), Gaps = 28/340 (8%)
Query 37 TPYEVIAEFDQTKIRYY--------AAQQRLYKEPLVFVAPLAINMDIYDLYPYRSLIQY 88
TP +V+ E ++ ++ +Y A++ P++ V L I DL RS+++
Sbjct 48 TPSDVVYEENKLELLHYDAEATGIEVAEEDKEAVPILIVYALINRPYILDLQEERSVVRR 107
Query 89 FQAQGFDVYLIDWGRLTYQDRHLNFLSFIRKALPEYIQVIRTHSQSDKISLHGWSMAGIF 148
G DVYLIDW + D+HL ++ + + + V+R S D I++ G+ M G
Sbjct 108 LLEAGHDVYLIDWNEPSRLDQHLTLDDYVNRYMDNCVDVVRERSGQDAINILGYCMGGTM 167
Query 149 VLLYSALNQPNHVKNLIVLGSPIDSYASGRIGKLYQFVHKSIASNKKLQTRLYSGLPKRL 208
++Y+AL H + + LG A+G F H + YS P+ +
Sbjct 168 SVMYTAL----HKEKVNTLGL----MAAGLC-----FDHTGGVLEEWGSEEYYS--PQDV 212
Query 209 IHT----PGILNALGFKILDP-KGWIDGHIQLLKNLENKKLVQEHATLGHFLNNMIDYPA 263
+ T P + +GF ++DP + ++ +I+ +N+EN+ V+ + +L + ID
Sbjct 213 VDTFGNVPSDMLDIGFALMDPVENYVTKYIRFAENMENEGFVENFGRMEQWLGDGIDVAG 272
Query 264 GINQDMLFNVWLQNPLKHGAIRLQDQVIELKNIQSSLLIGAGRSDQLVTADAVKPLTQLT 323
L +V+ N L + L + ++L NI +L G D L+ +A KP +
Sbjct 273 EAYVQFLEDVYQDNKLYKNELELNGKHVDLDNIDMPVLQLMGEYDHLIPPEASKPFNDVI 332
Query 324 SSSDVTFTLIPGGHLGLMSSQASSEEFWPMFKHWLAQRST 363
+S D GH+GL S ++ + WP W ++RST
Sbjct 333 ASDDTRTIEFSTGHIGLSVSSSTHADLWPEVAEWYSERST 372
>Q5UYM0 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966
/ VKM B-1809)]
Length=475
Score = 121 bits (303), Expect = 4e-34
Identities = 89/340 (26%), Positives = 156/340 (46%), Gaps = 28/340 (8%)
Query 37 TPYEVIAEFDQTKIRYYAAQ--------QRLYKEPLVFVAPLAINMDIYDLYPYRSLIQY 88
TP V+ E ++ ++ +Y A+ + P++ V L I DL RS+++
Sbjct 48 TPSNVVYEENKLELLHYDAEAAGIEVPDEEKEDVPILIVYALINRPYILDLQEERSVVRR 107
Query 89 FQAQGFDVYLIDWGRLTYQDRHLNFLSFIRKALPEYIQVIRTHSQSDKISLHGWSMAGIF 148
G DVYLIDW + D+HL ++ + + + V+R S D I++ G+ M G
Sbjct 108 LLEAGHDVYLIDWNEPSRLDQHLTLDDYVNRYMDNCVDVVRDRSGQDAINILGYCMGGTM 167
Query 149 VLLYSALNQPNHVKNLIVLGSPIDSYASGRIGKLYQFVHKSIASNKKLQTRLYSGLPKRL 208
++Y+AL H + + LG A+G F H + YS P+ +
Sbjct 168 SVMYTAL----HKEKVNTLGL----MAAGLC-----FDHTGGVLEEWGSEEYYS--PQDV 212
Query 209 IHTPGILNA----LGFKILDP-KGWIDGHIQLLKNLENKKLVQEHATLGHFLNNMIDYPA 263
+ T G + A +GF ++DP + ++ +I+ +N+EN+ V+ + +L + ID
Sbjct 213 VDTFGNVPADMLDIGFALMDPVENYVTKYIRFAENMENEGFVENFGRMEQWLGDGIDVAG 272
Query 264 GINQDMLFNVWLQNPLKHGAIRLQDQVIELKNIQSSLLIGAGRSDQLVTADAVKPLTQLT 323
L +V+ N L + L + ++L NI +L G D L+ +A KP +
Sbjct 273 EAYVQFLEDVYQDNKLYKNELELDGKHVDLDNIDMPVLQLMGEYDHLIPPEASKPFNDVI 332
Query 324 SSSDVTFTLIPGGHLGLMSSQASSEEFWPMFKHWLAQRST 363
+S D GH+GL S ++ + WP W ++RST
Sbjct 333 ASDDTRTIEFSTGHIGLSVSSSTHADLWPEVAEWYSERST 372
>P45370 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Allochromatium
vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801
/ NCIMB 10441 / D)]
Length=355
Score = 102 bits (253), Expect = 8e-28
Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 14/300 (5%)
Query 63 PLVFVAPLAINMDIYDLYPYRSLIQYFQAQGFDVYLIDWGRLTYQDRHLNFLSFIRKALP 122
PL+ V L + D+ RS I+ A G DVYLIDWG DR L +I +
Sbjct 69 PLLIVYALVNRPYMTDIQEDRSTIKGLLATGQDVYLIDWGYPDQADRALTLDDYINGYID 128
Query 123 EYIQVIRTHSQSDKISLHGWSMAGIFVLLYSALNQPNHVKNLIVLGSPIDSYASGRIGKL 182
+ +R DK++L G G F L+YSAL+ P+ V+NL+ + +P+D +
Sbjct 129 RCVDYLREAHGVDKVNLLGICQGGAFSLMYSALH-PDKVRNLVTMVTPVDFKTPDNLLSA 187
Query 183 Y-QFVHKSIASNKKLQTRLYSGLPKRLIHTPGILNALGFKILDPKGWIDGHIQLLKNLEN 241
+ Q V +A + +P L++ L+ F + K ++ ++ L++
Sbjct 188 WVQNVDIDLAVDTM------GNIPGELLNWT-FLSLKPFSLTGQK-----YVNMVDLLDD 235
Query 242 KKLVQEHATLGHFLNNMIDYPAGINQDMLFNVWLQNPLKHGAIRLQDQVIELKNIQSSLL 301
V+ + ++ + D + + + + N +G + L Q ++LK+I +L
Sbjct 236 PDKVKNFLRMEKWIFDSPDQAGETFRQFIKDFYQNNGFLNGGVVLGGQEVDLKDITCPVL 295
Query 302 IGAGRSDQLVTADAVKPLTQLTSSSDVTFTLIPGGHLGLMSSQASSEEFWPMFKHWLAQR 361
D LV DA + L LTSS D T PGGH+G+ S + +E P WL +R
Sbjct 296 NIFALQDHLVPPDASRALKGLTSSPDYTELAFPGGHIGIYVSGKAQKEVTPAIGKWLNER 355
>P45366 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Thiocystis
violacea]
Length=355
Score = 95.5 bits (236), Expect = 2e-25
Identities = 76/303 (25%), Positives = 137/303 (45%), Gaps = 14/303 (5%)
Query 61 KEPLVFVAPLAINMDIYDLYPYRSLIQYFQAQGFDVYLIDWGRLTYQDRHLNFLSFIRKA 120
K PL+ V L + D+ RS I+ A G DVYLIDWG D L +I
Sbjct 66 KTPLLIVYALVNRPYMTDIQEDRSTIKGLLATGQDVYLIDWGYPDQADSALTLDDYINGY 125
Query 121 LPEYIQVIRTHSQSDKISLHGWSMAGIFVLLYSALNQPNHVKNLIVLGSPIDSYASGRIG 180
+ + + + D++++ G G F L+Y++L+ P+ VKNL+ + +P+D G +
Sbjct 126 IDSCVDYLCETHEVDQVNILGICQGGAFSLMYASLH-PDKVKNLVTMVTPVDFKTPGNLL 184
Query 181 KLY-QFVHKSIASNKKLQTRLYSGLPKRLIHTPGILNALGFKILDPKGWIDGHIQLLKNL 239
+ Q V +A + +P L++ L+ F + K ++ ++ L
Sbjct 185 SAWVQNVDIDLAVDTM------GNIPGELLNWT-FLSLKPFSLTGQK-----YVNMVDML 232
Query 240 ENKKLVQEHATLGHFLNNMIDYPAGINQDMLFNVWLQNPLKHGAIRLQDQVIELKNIQSS 299
++ V+ + ++ + D + + + +N +G ++L + I+LKN+
Sbjct 233 DDPDKVKNFLRMEKWIFDSPDQAGETFRQFTKDFYQKNGFINGGVKLGGKEIDLKNVDCP 292
Query 300 LLIGAGRSDQLVTADAVKPLTQLTSSSDVTFTLIPGGHLGLMSSQASSEEFWPMFKHWLA 359
+L D LV DA K L +++ T PGGH+G+ S + +E P WL
Sbjct 293 VLNIYALQDHLVPPDASKALNPWSAARTYTELAFPGGHIGIYVSGKAQKEVTPAIGKWLN 352
Query 360 QRS 362
+RS
Sbjct 353 ERS 355
>P73390 Poly(3-hydroxyalkanoate) polymerase subunit PhaC [Synechocystis
sp. (strain PCC 6803 / Kazusa)]
Length=378
Score = 94.4 bits (233), Expect = 5e-25
Identities = 86/333 (26%), Positives = 144/333 (43%), Gaps = 20/333 (6%)
Query 37 TPYEVIAEFDQTKI-RYYAAQQRLYKEPLVFVAPLAINMDIYDLYPYRSLIQYFQAQGFD 95
TP E + + D+ + R+ + P++ V L + DL RSL+ G D
Sbjct 57 TPKEAVYQEDKVILYRFQPVVENPLPIPVLIVYALVNRPYMVDLQEGRSLVANLLKLGLD 116
Query 96 VYLIDWGRLTYQDRHLNFLSFIRKALPEYIQVIRTHSQSDKISLHGWSMAGIFVLLYSAL 155
VYLIDWG + DR L ++ L + +I SQ +KI+L G G F L Y++L
Sbjct 117 VYLIDWGYPSRGDRWLTLEDYLSGYLNNCVDIICQRSQQEKITLLGVCQGGTFSLCYASL 176
Query 156 NQPNHVKNLIVLGSPIDSYASGRIGKLYQFVHKSIASNKKLQTRLYSGLPKRLIHTPGIL 215
P+ VKNL+V+ +P+D G + ++ + + + + PG
Sbjct 177 -FPDKVKNLVVMVAPVDFEQPGTL------LNARGGCTLGAEAVDIDLMVDAMGNIPGDY 229
Query 216 NALGFKILDPKGWIDGHIQLLKNLENKKLVQEHATLGHFLN------NMIDYPAGINQDM 269
L F +L P + K L+ ++ + A L +FL + D +
Sbjct 230 LNLEFLMLKPL-----QLGYQKYLDVPDIMGDEAKLLNFLRMEKWIFDSPDQAGETYRQF 284
Query 270 LFNVWLQNPLKHGAIRLQDQVIELKNIQSSLLIGAGRSDQLVT-ADAVKPLTQLTSSSDV 328
L + + QN L G + + D++++L N+ +L D LV A ++ L + D
Sbjct 285 LKDFYQQNKLIKGEVMIGDRLVDLHNLTMPILNLYAEKDHLVAPASSLALGDYLPENCDY 344
Query 329 TFTLIPGGHLGLMSSQASSEEFWPMFKHWLAQR 361
T P GH+G+ S + P HWL++R
Sbjct 345 TVQSFPVGHIGMYVSGKVQRDLPPAIAHWLSER 377
>Q9ZHI2 Poly(3-hydroxyalkanoate) polymerase [Chromobacterium violaceum
(strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614
/ NCIMB 9131 / NCTC 9757)]
Length=568
Score = 67.8 bits (164), Expect = 8e-16
Identities = 72/319 (23%), Positives = 147/319 (46%), Gaps = 28/319 (9%)
Query 29 KSLVLSQTTPYEVIAEFDQTK-IRYYAAQQRLYKEPLVFVAPLAINMDIYDLYPYRSLIQ 87
K+LV+ TP +V+ + + I+Y ++Y++PL+FV P + DL P S+++
Sbjct 180 KNLVV---TPGQVVFRNELIELIQYTPTTDKVYEKPLLFVPPCINKYYLMDLQPDNSMVR 236
Query 88 YFQAQGFDVYLIDWGRLTYQDRHLNFLSFIRKALPEYIQVIRTHSQSDKISLHGWSMAGI 147
+F AQG+ V+LI W + +H + ++I K + + ++ ++ +++ G+ + G+
Sbjct 237 HFVAQGYRVFLISWRSAVAEMKHFTWETYIEKGVFAAAEAVQKITKQPTMNVLGFCVGGV 296
Query 148 FVLLYSALNQPNHVK---NLIVLGSPIDSYASGRIGKLYQFVHKSIASNKKLQTRLYSGL 204
+ + Q +K + + S ID G I F+ +S+ + + + ++ SG
Sbjct 297 ILTTALCVAQAKGLKYFDSATFMTSLIDHAEPGEIS---FFIDESVVAGR--EAKMASG- 350
Query 205 PKRLIHTPGILNALGFKILDPKGWIDGHIQLLKNLENKKLVQEHAT---LGHFLNNMIDY 261
GI++ G +I + + + + N L+ + L + N+ +D
Sbjct 351 --------GIIS--GKEIGRTFASLRANDLVWNYVVNNYLLGKTPAPFDLLFWNNDAVDL 400
Query 262 PAGINQDMLFNVWLQNPL-KHGAIRLQDQVIELKNIQSSLLIGAGRSDQLVT-ADAVKPL 319
P ++ +L ++ N L + GAI L I++ I + + A R D +V + A L
Sbjct 401 PLPMHTFLLRQFYMNNALVRPGAITLCGVPIDIAKIDVPVYMFAARDDHIVLWSSAFSGL 460
Query 320 TQLTSSSDVTFTLIPGGHL 338
L + F L GH+
Sbjct 461 KYLQGAPSRRFVLGASGHI 479
>P26496 Poly(3-hydroxyalkanoate) polymerase 2 [Pseudomonas oleovorans]
Length=560
Score = 52.8 bits (125), Expect = 5e-11
Identities = 73/347 (21%), Positives = 132/347 (38%), Gaps = 53/347 (15%)
Query 50 IRYYAAQQRLYKEPLVFVAPLAINMDIYDLYPYRSLIQYFQAQGFDVYLIDWGRLTYQDR 109
I+Y ++ + PL+ V P I+DL S +QY G V+++ W + R
Sbjct 204 IQYKPMSEKQHARPLLVVPPQINKFYIFDLSSTNSFVQYMLKNGLQVFMVSWRNPDPRHR 263
Query 110 HLNFLSFIRKALPEYIQVIRTHSQSDKISLHGWSMAGIFVLLYSALNQPNH----VKNLI 165
S++ +AL E + R+ S + +L G G+ + Q H V++
Sbjct 264 EWGLSSYV-QALEEALNACRSISGNRDPNLMGACAGGLTMAALQGHLQAKHQLRRVRSAT 322
Query 166 VLGSPIDSYASGRIGKLYQFVHKSIASNKKLQTRLYSGLPKRLIHTPGILNALGFKILDP 225
L S +DS ++ A + ++ KR + G+L+ G ++
Sbjct 323 YLVSLLDS--------KFESPASLFADEQTIEA------AKRRSYQRGVLD--GAEVARI 366
Query 226 KGWIDGHIQLLKNLENKKLVQEHATLGHFLNNMID---YPAGINQDMLFNVWLQNPLKHG 282
W+ + + N L+ + L D PA ++ D+L + + NPL H
Sbjct 367 FAWMRPNDLIWNYWVNNYLLGKTPPAFDILYWNADSTRLPAALHGDLL-DFFKLNPLTHP 425
Query 283 A-IRLQDQVIELKNIQSSLLIGAGRSDQLVTADAVKPLTQLTSSSDVTFTLIPGGHL--- 338
A + + I+L+ ++ AG +D + DAV + L D F L GH+
Sbjct 426 AGLEVCGTPIDLQKVELDSFTVAGSNDHITPWDAVY-RSALLLGGDRRFVLANSGHIQSI 484
Query 339 -----------------------GLMSSQASSEEFWPMFKHWLAQRS 362
L ++ S +WP++ W+ RS
Sbjct 485 INPPGNPKAYYLANPKLSSDPRAWLHDAKRSEGSWWPLWLEWITARS 531
Score = 17.3 bits (33), Expect = 7.0
Identities = 7/22 (32%), Positives = 11/22 (50%), Gaps = 0/22 (0%)
Query 239 LENKKLVQEHATLGHFLNNMID 260
+E L + HFL N+I+
Sbjct 108 IEESHLDDDDRARAHFLFNLIN 129
Lambda K H a alpha
0.324 0.138 0.412 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1064931
Database: d9e0bf7ee98dd37c2fd9745a7d037d5b.SwissProt.fasta
Posted date: May 30, 2024 2:09 AM
Number of letters in database: 3,657
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
