BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c3ba31961b3de47f34b4836c531a96e2.SwissProt.fasta
14 sequences; 4,927 total letters
Query= ACIAD2319
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
P06996 Outer membrane porin C [Escherichia coli (strain K12)] 61.6 7e-14
Q8CVW1 Outer membrane porin C [Escherichia coli O6:H1 (strain CFT... 61.2 9e-14
P0DQH0 Outer membrane porin C [Escherichia coli O6:K15:H31 (strai... 57.4 2e-12
P30692 Major outer membrane protein P.IB [Neisseria sicca] 56.2 4e-12
A0RZH5 Outer membrane protein Omp-EA [Erwinia amylovora] 56.2 4e-12
P57042 Major outer membrane protein P.IB [Neisseria meningitidis ... 53.5 3e-11
P30688 Major outer membrane protein P.IB [Neisseria meningitidis ... 53.5 3e-11
P0DSD9 Outer membrane porin F [Escherichia coli O6:K15:H31 (strai... 51.6 1e-10
A0A4P7TN82 Outer membrane porin F [Shigella flexneri serotype 5a ... 50.8 2e-10
P02931 Outer membrane porin F [Escherichia coli (strain K12)] 50.8 2e-10
E6MZM0 Major outer membrane protein P.IB [Neisseria meningitidis ... 50.1 3e-10
P30690 Major outer membrane protein P.IB [Neisseria meningitidis ... 50.1 3e-10
P30689 Major outer membrane protein P.IB [Neisseria meningitidis ... 49.7 5e-10
P30687 Major outer membrane protein P.IB [Neisseria meningitidis ... 49.7 5e-10
>P06996 Outer membrane porin C [Escherichia coli (strain K12)]
Length=367
Score = 61.6 bits (148), Expect = 7e-14
Identities = 60/233 (26%), Positives = 102/233 (44%), Gaps = 33/233 (14%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSD----FAGNNVTALNSNASRIG 57
MK +L+ V L ++ A A +Y K LD D F+ N + R+G
Sbjct 1 MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDNKDVDGDQTYMRLG 60
Query 58 IKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGK-----YD 112
KGE ++TD ++ E+ I + + ++ + R + GLKF+D+GS G+ YD
Sbjct 61 FKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLKFQDVGSFDYGRNYGVVYD 120
Query 113 --SYFKSAAGNNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNL----IIPGLQFNIM 166
S+ D + + ++R N GF T +N ++ GL F +
Sbjct 121 VTSWTDVLPEFGGDTYGSDNFM--------QQRGN---GFATYRNTDFFGLVDGLNFAVQ 169
Query 167 SQ------QGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGN 213
Q GE + T G++ R GDG+ S++YD + +G+ AI+ +
Sbjct 170 YQGKNGNPSGEGFTSGVTNNGRDALRQN-GDGVGGSITYDYEGFGIGGAISSS 221
Score = 17.7 bits (34), Expect = 6.9
Identities = 27/120 (23%), Positives = 44/120 (37%), Gaps = 26/120 (22%)
Query 52 NASRIGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLG--------LKFKDI 103
NA+R+G G N +A++ S L ++ + LG LK+ D+
Sbjct 264 NATRVGSLGWANKAQNFEA--VAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDV 321
Query 104 GSLKAGKYDSYFKSAAGNNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNLIIPGLQF 163
G+ YF N T +D L + + G TD N++ GL +
Sbjct 322 GA------TYYFNK---------NMSTYVDYKINLLDDNQFTRDAGINTD-NIVALGLVY 365
>Q8CVW1 Outer membrane porin C [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=375
Score = 61.2 bits (147), Expect = 9e-14
Identities = 94/398 (24%), Positives = 153/398 (38%), Gaps = 54/398 (14%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSD----FAGNNVTALNSNASRIG 57
MK +L+ V L ++ A A +Y K LD D F+ + + R+G
Sbjct 1 MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDDKSVDGDQTYMRLG 60
Query 58 IKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGK-----YD 112
KGE ++TD ++ E+ I + S+ + R + GLKF+DIGS G+ YD
Sbjct 61 FKGETQVTDQLTGYGQWEYQIQGNAPESENNSWTRVAFAGLKFQDIGSFDYGRNYGVVYD 120
Query 113 --SYFKSAAGNNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNL----IIPGLQFNIM 166
S+ D + + ++R N GF T +N ++ GL F +
Sbjct 121 VTSWTDVLPEFGGDTYGSDNFM--------QQRGN---GFATYRNTDFFGLVDGLNFAVQ 169
Query 167 SQ------QGED----TKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGV 216
Q GE+ T T G++ R GDG+ S++YD + +G+ AA++ +
Sbjct 170 YQGQNGSVSGENDPDFTGHGITNNGRKALRQN-GDGVGGSITYDYEGFGVGAAVSSSKRT 228
Query 217 AGKYNAYSLSGIYSDAIRVTGSFDFSKYGVDGLVFGALWQNAKPTDDTVLTVSGTGTSAV 276
+ N L G A TG KY + + A + V G +
Sbjct 229 WDQNNT-GLIGTGDRAETYTGGL---KYDANNIYLAAQYTQTY----NATRVGSLGWANK 280
Query 277 TTTFKGLEEDAFSLTAAYVIPSTPWKIKGEYVESNTSVDSRSDRKISQY-GLGVDYNLNK 335
F+ + + F + K K V + + D D I +Y +G Y NK
Sbjct 281 AQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVVAGRNYD---DEDILKYVDVGATYYFNK 337
Query 336 QARLY-----GVLAQQKRDWLASDDKKTVVGLGMEYNF 368
Y +L + A + +V LG+ Y F
Sbjct 338 NMSTYVDYKINLLDDNQFTRAAGINTDDIVALGLVYQF 375
>P0DQH0 Outer membrane porin C [Escherichia coli O6:K15:H31 (strain
536 / UPEC)]
Length=375
Score = 57.4 bits (137), Expect = 2e-12
Identities = 93/399 (23%), Positives = 155/399 (39%), Gaps = 56/399 (14%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSD----FAGNNVTALNSNASRIG 57
MK +L+ V L ++ A A +Y K LD D F+ + + R+G
Sbjct 1 MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYFSDDKSVDGDQTYMRLG 60
Query 58 IKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGK-----YD 112
KGE ++TD ++ E+ I + S+ + R + GLKF+DIGS G+ YD
Sbjct 61 FKGETQVTDQLTGYGQWEYQIQGNAPESENNSWTRVAFAGLKFQDIGSFDYGRNYGVVYD 120
Query 113 --SYFKSAAGNNQDIFNDHTILDMTSVLHGEERLNNVIGFETDKNL----IIPGLQFNIM 166
S+ D + + ++R N GF T +N ++ GL F +
Sbjct 121 VTSWTDVLPEFGGDTYGSDNFM--------QQRGN---GFATYRNTDFFGLVDGLNFAVQ 169
Query 167 SQ------QGED----TKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGV 216
Q GE+ T T G++ R GDG+ S++YD + +G+ AA++ +
Sbjct 170 YQGQNGSVSGENDPDFTGHGITNNGRKALRQN-GDGVGGSITYDYEGFGVGAAVSSSKRT 228
Query 217 AGKYNAYSLSGIYSDAIRVTGSFDFSKYGVDGLVFGALWQNAKPTDDTVLTVSGTGTSAV 276
+ N + G A TG KY + + A + V G +
Sbjct 229 DAQ-NTAAYIGNGDRAETYTGGL---KYDANNIYLAAQYTQTY----NATRVGSLGWANK 280
Query 277 TTTFKGLEEDAFSLTAAYVIPSTPW-KIKGEYVESNTSVDSRSDRKISQY-GLGVDYNLN 334
F+ + + F PS + + KG+ + + D I +Y +G Y N
Sbjct 281 AQNFEAVAQYQFDFGLR---PSVAYLQSKGKNL-GTIGTRNYDDEDILKYVDVGATYYFN 336
Query 335 KQARLY-----GVLAQQKRDWLASDDKKTVVGLGMEYNF 368
K Y +L + A + +V LG+ Y F
Sbjct 337 KNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF 375
>P30692 Major outer membrane protein P.IB [Neisseria sicca]
Length=357
Score = 56.2 bits (134), Expect = 4e-12
Identities = 90/384 (23%), Positives = 162/384 (42%), Gaps = 44/384 (11%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNA-------S 54
MKK L+A T+A L + AA A TLYG++ ++ V + N+V+ N A S
Sbjct 1 MKKSLIALTLAALPV-AAMADVTLYGQVKAGVE-VSRTKETVNHVSTKNKTATEIADFGS 58
Query 55 RIGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSY 114
RIG KG E L++N++ ++ E +T +G+D R ++GL+ G ++AGK ++
Sbjct 59 RIGFKGHEHLSNNLNAIWQVEQ--NTSVAGTDKGWGTRESFIGLE-GGFGKVRAGKLNTA 115
Query 115 FKSAAGNNQDIFNDHTILDMTSVLHGEERLNNV----IGFETDKNLIIPGLQFNIMSQQG 170
K +N D + D + + +L V + D + + G + Q
Sbjct 116 LK----DNSDSVDPWESSDANASVLQFGKLKRVDERKVSVRYD-SPVFAGFSASAQYQPR 170
Query 171 EDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGVAGKYNAYSLSGIYS 230
++ ++ + R+ F G L+Y+N G AG F + L S
Sbjct 171 DNANPEDKHVHDVKTRHSFDLG----LNYENS--GFFGRYAGTFAKRKVLSDDHLELFNS 224
Query 231 DAIRVTGSFDFSKYGVDGLVFGALWQNAKPTDDTVLTVSG--TGTSAVTTTFKGLEEDAF 288
+ GS + Y LV G ++ +++V+G G A K E
Sbjct 225 NT--TLGSGVYKDYQAHRLVGG------YDANNVLVSVAGQYEGFKADVADAKKNERTEV 276
Query 289 SLTAAYVIPSTPWKIKGEYVESNTSVDSRSDRKISQYG---LGVDYNLNKQARLYGVLAQ 345
++T Y + + ++ Y + ++ + SQY +G DY+ +K+ V A
Sbjct 277 AVTGGYRMGNVMPRL--SYAHGFKAKENGVKQGNSQYNQVIVGADYDFSKRTSAL-VSAG 333
Query 346 QKRDWLASDDKKTVVGL-GMEYNF 368
++ D ++ GL G+ + F
Sbjct 334 WLKEGKGGDKTQSTAGLVGLRHKF 357
>A0RZH5 Outer membrane protein Omp-EA [Erwinia amylovora]
Length=383
Score = 56.2 bits (134), Expect = 4e-12
Identities = 97/406 (24%), Positives = 160/406 (39%), Gaps = 62/406 (15%)
Query 2 MKKLLLAATV-ATLSLSAAHAAPT---------LYGKINLTLDQVDNSDFAGNNVTALNS 51
MK+ +LA + A L+ AA+AA LYGK+ D A NN +
Sbjct 1 MKRNILAVLIPALLAAGAANAAEIYNKDGNKLDLYGKVKAMRYLSDADSNASNNA---DK 57
Query 52 NASRIGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNR----YLGLKFKDIGSLK 107
+ +RIG KG+ + D ++ E+ S S S +D + N+ + GLK KD GS+
Sbjct 58 SYTRIGFKGQTLINDQLTGYGQWEYNFSLSNSESSSDAQSGNKTRLGFAGLKLKDYGSVD 117
Query 108 AGKYDS--YFKSAAGNNQDIF--NDHTILDMTSVLHGEERLNNVIGFETDKNLIIPGLQF 163
G+ Y A + F +T D + G L +D ++ GL+
Sbjct 118 YGRNYGVIYDVEAFTDMMPEFGATGYTRTDTYMLTRGNSMLT---WRNSDFFGLVDGLKI 174
Query 164 NIMSQ---QGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGVAGKY 220
+ Q +G T+ N + GDG SLSY + GL+ I G + +
Sbjct 175 ALQYQGKNEGSGTRATNVS---------NGDGYGASLSYKIVE-GLT--INGAMSSSNRL 222
Query 221 NAYSLSGIYSDAIRVTGSFDFS-------KYGVDGLVFGALW---QNAKPTDDTVLTVSG 270
NA S S S + GS + KY +G+ + +N P T +G
Sbjct 223 NANSASSTTSQKMAAYGSGGRAEAWATGLKYDANGVYLAGTYAETRNTNPFSGASYTFAG 282
Query 271 TGTSAVTTTFKGLEEDAFSLTAAYVIPSTPWKIKGEYVESNTS--VDSRSDRKISQY-GL 327
T+ + + ++ L A Y S + YV++ + D +S++ +
Sbjct 283 NSTATAVSGYANKVQNT-ELVAQYQFDS-GLRPSLAYVQTKAKDIENGIGDADLSKFVDV 340
Query 328 GVDYNLNKQARLY-----GVLAQQKRDWLASDDKKTVVGLGMEYNF 368
Y NK + +L+ + L +DD +V +G+ Y F
Sbjct 341 AATYYFNKNMSAFVDYKVNLLSDSNKLHLNTDD---IVAVGLVYQF 383
>P57042 Major outer membrane protein P.IB [Neisseria meningitidis
serogroup A / serotype 4A (strain DSM 15465 / Z2491)]
Length=329
Score = 53.5 bits (127), Expect = 3e-11
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNA------SR 55
MKK L+A T+A L + AA A TLYG I ++ + + G V ++ + S+
Sbjct 1 MKKSLIALTLAALPV-AAMADVTLYGTIKTGVETSRSVEHNGGQVVSVETGTGIVDLGSK 59
Query 56 IGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYF 115
IG KG+E L + + ++ E S +G+D+ R ++GLK G L+ G+ +S
Sbjct 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLK-GGFGKLRVGRLNSVL 116
Query 116 KSAAG-NNQDIFNDHTILDMTSVLHGEERLNNV 147
K N D +D+ L + + E RL +V
Sbjct 117 KDTGDINPWDSKSDY--LGVNKIAEPEARLISV 147
>P30688 Major outer membrane protein P.IB [Neisseria meningitidis
serogroup B]
Length=331
Score = 53.5 bits (127), Expect = 3e-11
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNA------SR 55
MKK L+A T+A L + AA A TLYG I ++ + + G V ++ + S+
Sbjct 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVEHNGGQVVSVETGTGIVDLGSK 59
Query 56 IGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYF 115
IG KG+E L + + ++ E S +G+D+ R ++GLK G L+ G+ +S
Sbjct 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLK-GGFGKLRVGRLNSVL 116
Query 116 KSAAG-NNQDIFNDHTILDMTSVLHGEERLNNV 147
K N D +D+ L + + E RL +V
Sbjct 117 KDTGDINPWDSKSDY--LGVNKIAEPEARLISV 147
>P0DSD9 Outer membrane porin F [Escherichia coli O6:K15:H31 (strain
536 / UPEC)]
Length=362
Score = 51.6 bits (122), Expect = 1e-10
Identities = 89/401 (22%), Positives = 150/401 (37%), Gaps = 72/401 (18%)
Query 1 LMKKLLLAATVATLSLSAAHAAPTLYGK----INLTLDQVDNSDFA-GNNVTALNSNA-- 53
+MK+ +LA V L ++ A +Y K ++L V F+ GN + N
Sbjct 1 MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDM 60
Query 54 --SRIGIKGEEKLTDNISVLYLAEWAI---STDGSGSDTDLSARNRYLGLKFKDIGSLKA 108
+R+G KGE ++ +++ E+ +++G+ + T R + GLK+ D+GS
Sbjct 61 TYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDY 120
Query 109 GKYDSYFKSAAGNNQDIFNDHTILDMTSVLHGEER------LNNVIGFETDKNL----II 158
G+ A G DM G+ + V G T +N ++
Sbjct 121 GRNYGVVYDALG----------YTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLV 170
Query 159 PGLQFNI--MSQQGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGV 216
GL F + + + DT R GDG+ S+SY+ + +G I G +G
Sbjct 171 DGLNFAVQYLGKNERDT-----------ARRSNGDGVGGSISYEYEGFG----IVGAYGA 215
Query 217 AGKYNAYSLSGIYSDAIRVTGSFDFSKYGVDGLVFGALW---QNAKPTDDTVLTVSGTGT 273
A + N S + + KY + + A + +NA P + SG
Sbjct 216 ADRTNLQEESSL-GKGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFAN 274
Query 274 SAVTTTFKGLEEDAFSLTAAYVIPSTPW-KIKGEYVESNTSVDSRSDRKISQYGLGVDYN 332
+ F L PS + K K + VE VD ++ + +G Y
Sbjct 275 KTQDVLLVAQYQFDFGLR-----PSIAYTKSKAKDVEGIGDVD-----LVNYFEVGATYY 324
Query 333 LNKQARLY-----GVLAQQKRDWLASDDKKTVVGLGMEYNF 368
NK Y + + + SDD V +G+ Y F
Sbjct 325 FNKNMSTYVDYIINQIDSDNKLGVGSDD---TVAVGIVYQF 362
>A0A4P7TN82 Outer membrane porin F [Shigella flexneri serotype
5a (strain M90T)]
Length=362
Score = 50.8 bits (120), Expect = 2e-10
Identities = 88/401 (22%), Positives = 150/401 (37%), Gaps = 72/401 (18%)
Query 1 LMKKLLLAATVATLSLSAAHAAPTLYGK----INLTLDQVDNSDFA-GNNVTALNSNA-- 53
+MK+ +LA V L ++ A +Y K ++L V F+ GN + N
Sbjct 1 MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDM 60
Query 54 --SRIGIKGEEKLTDNISVLYLAEWAI---STDGSGSDTDLSARNRYLGLKFKDIGSLKA 108
+R+G KGE ++ +++ E+ +++G+ + T R + GLK+ D+GS
Sbjct 61 TYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDY 120
Query 109 GKYDSYFKSAAGNNQDIFNDHTILDMTSVLHGEER------LNNVIGFETDKNL----II 158
G+ A G DM G+ + V G T +N ++
Sbjct 121 GRNYGVVYDALG----------YTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLV 170
Query 159 PGLQFNI--MSQQGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGV 216
GL F + + + DT R GDG+ S+SY+ + +G I G +G
Sbjct 171 DGLNFAVQYLGKNERDT-----------ARRSNGDGVGGSISYEYEGFG----IVGAYGA 215
Query 217 AGKYNAYSLSGIYSDAIRVTGSFDFSKYGVDGLVFGALW---QNAKPTDDTVLTVSGTGT 273
A + N + + + KY + + A + +NA P + SG
Sbjct 216 ADRTNLQEAQPL-GNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFAN 274
Query 274 SAVTTTFKGLEEDAFSLTAAYVIPSTPW-KIKGEYVESNTSVDSRSDRKISQYGLGVDYN 332
+ F L PS + K K + VE VD ++ + +G Y
Sbjct 275 KTQDVLLVAQYQFDFGLR-----PSIAYTKSKAKDVEGIGDVD-----LVNYFEVGATYY 324
Query 333 LNKQARLY-----GVLAQQKRDWLASDDKKTVVGLGMEYNF 368
NK Y + + + SDD V +G+ Y F
Sbjct 325 FNKNMSTYVDYIINQIDSDNKLGVGSDD---TVAVGIVYQF 362
>P02931 Outer membrane porin F [Escherichia coli (strain K12)]
Length=362
Score = 50.8 bits (120), Expect = 2e-10
Identities = 88/401 (22%), Positives = 150/401 (37%), Gaps = 72/401 (18%)
Query 1 LMKKLLLAATVATLSLSAAHAAPTLYGK----INLTLDQVDNSDFA-GNNVTALNSNA-- 53
+MK+ +LA V L ++ A +Y K ++L V F+ GN + N
Sbjct 1 MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHYFSKGNGENSYGGNGDM 60
Query 54 --SRIGIKGEEKLTDNISVLYLAEWAI---STDGSGSDTDLSARNRYLGLKFKDIGSLKA 108
+R+G KGE ++ +++ E+ +++G+ + T R + GLK+ D+GS
Sbjct 61 TYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNKTRLAFAGLKYADVGSFDY 120
Query 109 GKYDSYFKSAAGNNQDIFNDHTILDMTSVLHGEER------LNNVIGFETDKNL----II 158
G+ A G DM G+ + V G T +N ++
Sbjct 121 GRNYGVVYDALG----------YTDMLPEFGGDTAYSDDFFVGRVGGVATYRNSNFFGLV 170
Query 159 PGLQFNI--MSQQGEDTKTDNTTLGQEGKRNGFGDGISTSLSYDNKDYGLSAAIAGNFGV 216
GL F + + + DT R GDG+ S+SY+ + +G I G +G
Sbjct 171 DGLNFAVQYLGKNERDT-----------ARRSNGDGVGGSISYEYEGFG----IVGAYGA 215
Query 217 AGKYNAYSLSGIYSDAIRVTGSFDFSKYGVDGLVFGALW---QNAKPTDDTVLTVSGTGT 273
A + N + + + KY + + A + +NA P + SG
Sbjct 216 ADRTNLQEAQPL-GNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFAN 274
Query 274 SAVTTTFKGLEEDAFSLTAAYVIPSTPW-KIKGEYVESNTSVDSRSDRKISQYGLGVDYN 332
+ F L PS + K K + VE VD ++ + +G Y
Sbjct 275 KTQDVLLVAQYQFDFGLR-----PSIAYTKSKAKDVEGIGDVD-----LVNYFEVGATYY 324
Query 333 LNKQARLY-----GVLAQQKRDWLASDDKKTVVGLGMEYNF 368
NK Y + + + SDD V +G+ Y F
Sbjct 325 FNKNMSTYVDYIINQIDSDNKLGVGSDD---TVAVGIVYQF 362
>E6MZM0 Major outer membrane protein P.IB [Neisseria meningitidis
serogroup B / serotype 15 (strain H44/76)]
Length=331
Score = 50.1 bits (118), Expect = 3e-10
Identities = 46/153 (30%), Positives = 73/153 (48%), Gaps = 13/153 (8%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNA------SR 55
MKK L+A T+A L + AA A TLYG I ++ + VT + + S+
Sbjct 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVFHQNGQVTEVTTATGIVDLGSK 59
Query 56 IGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYF 115
IG KG+E L + + ++ E S +G+D+ R ++GLK G L+ G+ +S
Sbjct 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLK-GGFGKLRVGRLNSVL 116
Query 116 KSAAG-NNQDIFNDHTILDMTSVLHGEERLNNV 147
K N D +D+ L + + E RL +V
Sbjct 117 KDTGDINPWDSKSDY--LGVNKIAEPEARLISV 147
>P30690 Major outer membrane protein P.IB [Neisseria meningitidis
serogroup B (strain MC58)]
Length=331
Score = 50.1 bits (118), Expect = 3e-10
Identities = 46/153 (30%), Positives = 73/153 (48%), Gaps = 13/153 (8%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNA------SR 55
MKK L+A T+A L + AA A TLYG I ++ + VT + + S+
Sbjct 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVFHQNGQVTEVTTATGIVDLGSK 59
Query 56 IGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYF 115
IG KG+E L + + ++ E S +G+D+ R ++GLK G L+ G+ +S
Sbjct 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLK-GGFGKLRVGRLNSVL 116
Query 116 KSAAG-NNQDIFNDHTILDMTSVLHGEERLNNV 147
K N D +D+ L + + E RL +V
Sbjct 117 KDTGDINPWDSKSDY--LGVNKIAEPEARLISV 147
>P30689 Major outer membrane protein P.IB [Neisseria meningitidis
serogroup B]
Length=331
Score = 49.7 bits (117), Expect = 5e-10
Identities = 45/153 (29%), Positives = 73/153 (48%), Gaps = 13/153 (8%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNA------SR 55
MKK L+A T+A L + AA A TLYG I ++ + G ++ + S+
Sbjct 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59
Query 56 IGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYF 115
IG KG+E L + + ++ E S +G+D+ R ++GLK G L+ G+ +S
Sbjct 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLK-GGFGKLRVGRLNSVL 116
Query 116 KSAAG-NNQDIFNDHTILDMTSVLHGEERLNNV 147
K N D +D+ L + + E RL +V
Sbjct 117 KDTGDINPWDSKSDY--LGVNKIAEPEARLISV 147
>P30687 Major outer membrane protein P.IB [Neisseria meningitidis
serogroup B]
Length=331
Score = 49.7 bits (117), Expect = 5e-10
Identities = 45/153 (29%), Positives = 73/153 (48%), Gaps = 13/153 (8%)
Query 2 MKKLLLAATVATLSLSAAHAAPTLYGKINLTLDQVDNSDFAGNNVTALNSNA------SR 55
MKK L+A T+A L + AA A TLYG I ++ + G ++ + S+
Sbjct 1 MKKSLIALTLAALPV-AAMADVTLYGTIKAGVETSRSVAHNGAQAASVETGTGIVDLGSK 59
Query 56 IGIKGEEKLTDNISVLYLAEWAISTDGSGSDTDLSARNRYLGLKFKDIGSLKAGKYDSYF 115
IG KG+E L + + ++ E S +G+D+ R ++GLK G L+ G+ +S
Sbjct 60 IGFKGQEDLGNGLKAIWQVEQKASI--AGTDSGWGNRQSFIGLK-GGFGKLRVGRLNSVL 116
Query 116 KSAAG-NNQDIFNDHTILDMTSVLHGEERLNNV 147
K N D +D+ L + + E RL +V
Sbjct 117 KDTGDINPWDSKSDY--LGVNKIAEPEARLISV 147
Lambda K H a alpha
0.314 0.132 0.376 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1374618
Database: c3ba31961b3de47f34b4836c531a96e2.SwissProt.fasta
Posted date: May 19, 2024 9:22 PM
Number of letters in database: 4,927
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
