BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 76d8dbb32dcb69cc226e5d6d6a9a7015.SwissProt.fasta
           10 sequences; 1,381 total letters



Query= ACIAD2342

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P77626 HTH-type transcriptional regulator SutR [Escherichia coli ...  65.5    1e-17
P06533 HTH-type transcriptional regulator SinR [Bacillus subtilis...  42.4    1e-09
P22753 HTH-type transcriptional regulator SinR [Bacillus lichenif...  41.6    3e-09
P9WMH7 Transcriptional regulator ClgR [Mycobacterium tuberculosis...  38.9    3e-08
P9WMH6 Transcriptional regulator ClgR [Mycobacterium tuberculosis...  38.9    3e-08
C1CYP4 HTH-type transcriptional regulator DdrOC [Deinococcus dese...  38.1    7e-08
P71049 HTH-type transcriptional regulator SlrR [Bacillus subtilis...  38.1    9e-08
P9WMH9 Uncharacterized HTH-type transcriptional regulator Rv0474 ...  34.7    1e-06
P9WMH8 Uncharacterized HTH-type transcriptional regulator MT0491 ...  34.7    1e-06
P55411 Uncharacterized HTH-type transcriptional regulator y4dL [S...  33.5    4e-06


>P77626 HTH-type transcriptional regulator SutR [Escherichia coli 
(strain K12)]
Length=178

 Score = 65.5 bits (158),  Expect = 1e-17
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (8%)

Query  12   LHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAKLMESNI  71
            L + RQ+ G SL+ LA   G++K+ L Q+E  + +P++ TLW +   L +PF+  +    
Sbjct  12   LKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPFSTFISP--  69

Query  72   PQTQVIRFGEGPSVASEIAHYQAILLANC-PTGARR--DVYILNTQPGEPRLSHPHPIGS  128
            PQ+        PSV       QA+++ +  P   +   + + +    G    S PH  G 
Sbjct  70   PQSAT------PSVYD--PQQQAMVITSLFPYDPQLCFEHFSIQMASGAISESTPHEKGV  121

Query  129  IEHIIIMKGCAKVGLTAEPVVLNEGDYICYPADQEHIFEALDEDT  173
            IEH++++ G   + +  E   LN G+ + + AD  HI+    E T
Sbjct  122  IEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYRNGGEQT  166


>P06533 HTH-type transcriptional regulator SinR [Bacillus subtilis 
(strain 168)]
Length=111

 Score = 42.4 bits (98),  Expect = 1e-09
 Identities = 22/63 (35%), Positives = 40/63 (63%), Gaps = 1/63 (2%)

Query  7   IVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEA-AQGNPSLETLWSLCVALEIPFAK  65
           ++ + + + R++ G SL+ELA +AG+AKS LS +E   Q NPS++ L  +   L++    
Sbjct  1   MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT  60

Query  66  LME  68
           L++
Sbjct  61  LLD  63


>P22753 HTH-type transcriptional regulator SinR [Bacillus licheniformis]
Length=111

 Score = 41.6 bits (96),  Expect = 3e-09
 Identities = 22/62 (35%), Positives = 39/62 (63%), Gaps = 1/62 (2%)

Query  7   IVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEA-AQGNPSLETLWSLCVALEIPFAK  65
           ++ + + + R++ G SL+ELA +AG+AKS LS +E   Q NPS++ L  +   L++    
Sbjct  1   MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT  60

Query  66  LM  67
           L+
Sbjct  61  LL  62


>P9WMH7 Transcriptional regulator ClgR [Mycobacterium tuberculosis 
(strain ATCC 25618 / H37Rv)]
Length=112

 Score = 38.9 bits (89),  Expect = 3e-08
 Identities = 19/62 (31%), Positives = 35/62 (56%), Gaps = 0/62 (0%)

Query  6   EIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAK  65
           E+V   L   R   G +L E++  A ++   LS++E  +  PS E L ++C AL++P + 
Sbjct  7   EVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLPLSV  66

Query  66  LM  67
           ++
Sbjct  67  VL  68


>P9WMH6 Transcriptional regulator ClgR [Mycobacterium tuberculosis 
(strain CDC 1551 / Oshkosh)]
Length=112

 Score = 38.9 bits (89),  Expect = 3e-08
 Identities = 19/62 (31%), Positives = 35/62 (56%), Gaps = 0/62 (0%)

Query  6   EIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAK  65
           E+V   L   R   G +L E++  A ++   LS++E  +  PS E L ++C AL++P + 
Sbjct  7   EVVGDVLRGARMSQGRTLREVSDSARVSLGYLSEIERGRKEPSSELLSAICTALQLPLSV  66

Query  66  LM  67
           ++
Sbjct  67  VL  68


>C1CYP4 HTH-type transcriptional regulator DdrOC [Deinococcus 
deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)]
Length=129

 Score = 38.1 bits (87),  Expect = 7e-08
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 0/57 (0%)

Query  12  LHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEIPFAKLME  68
           L   R + GL L ++A  A I+   LS LE  + NPSLETL +L  A  I    L+E
Sbjct  7   LRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLE  63


>P71049 HTH-type transcriptional regulator SlrR [Bacillus subtilis 
(strain 168)]
Length=152

 Score = 38.1 bits (87),  Expect = 9e-08
 Identities = 21/67 (31%), Positives = 38/67 (57%), Gaps = 1/67 (1%)

Query  16  RQKAGLSLAELARRAGIAKSTLSQLE-AAQGNPSLETLWSLCVALEIPFAKLMESNIPQT  74
           R++ G S+ +LA  +G++KS LS++E     NPS++ L  +   LE+   +L ++     
Sbjct  10  RKRKGYSINQLAVESGVSKSYLSKIERGVHTNPSVQFLKKVSATLEVELTELFDAETMMY  69

Query  75  QVIRFGE  81
           + I  GE
Sbjct  70  EKISGGE  76


>P9WMH9 Uncharacterized HTH-type transcriptional regulator Rv0474 
[Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)]
Length=140

 Score = 34.7 bits (78),  Expect = 1e-06
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 0/50 (0%)

Query  12  LHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEI  61
           +  +R+ A +S+ +LA R+G++   LSQ+E     PS + L  +  AL +
Sbjct  26  IRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75


>P9WMH8 Uncharacterized HTH-type transcriptional regulator MT0491 
[Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)]
Length=140

 Score = 34.7 bits (78),  Expect = 1e-06
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 0/50 (0%)

Query  12  LHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALEI  61
           +  +R+ A +S+ +LA R+G++   LSQ+E     PS + L  +  AL +
Sbjct  26  IRSQRETAHVSMRQLAERSGVSNPYLSQVERGLRKPSADVLSQIAKALRV  75


>P55411 Uncharacterized HTH-type transcriptional regulator y4dL 
[Sinorhizobium fredii (strain NBRC 101917 / NGR234)]
Length=196

 Score = 33.5 bits (75),  Expect = 4e-06
 Identities = 18/61 (30%), Positives = 33/61 (54%), Gaps = 0/61 (0%)

Query  1   MSLPIEIVAKGLHRERQKAGLSLAELARRAGIAKSTLSQLEAAQGNPSLETLWSLCVALE  60
           M+   E + + L   R+   +S  EL+ R+G+ +S +SQ+E     P L +L  +  AL+
Sbjct  1   MAYKTEHITQQLRAAREAQKMSQRELSARSGLTQSHISQIERGTMEPGLGSLVDVARALD  60

Query  61  I  61
           +
Sbjct  61  L  61



Lambda      K        H        a         alpha
   0.321    0.137    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 160211


  Database: 76d8dbb32dcb69cc226e5d6d6a9a7015.SwissProt.fasta
    Posted date:  May 20, 2024  8:43 AM
  Number of letters in database: 1,381
  Number of sequences in database:  10



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40