BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 03146487e522ce70de2666de95d36062.SwissProt.fasta
10 sequences; 1,537 total letters
Query= ACIAD2357
Length=183
Score E
Sequences producing significant alignments: (Bits) Value
P31586 Type II secretion system core protein G [Pectobacterium ca... 53.5 3e-13
P45773 Type II secretion system core protein G [Vibrio cholerae s... 49.3 9e-12
P31733 Type II secretion system core protein G [Aeromonas hydroph... 47.4 4e-11
P31585 Type II secretion system core protein G [Dickeya chrysanth... 47.4 5e-11
A0A0H3HDD6 Type II secretion system core protein G [Klebsiella mi... 45.4 2e-10
P41442 Type II secretion system core protein G [Escherichia coli ... 45.1 3e-10
P31735 Type II secretion system protein H [Aeromonas hydrophila] 44.3 9e-10
P15747 Type II secretion system protein H [Klebsiella pneumoniae] 43.9 1e-09
P15746 Type II secretion system core protein G [Klebsiella pneumo... 42.7 2e-09
P35646 Fimbrial protein EcpB [Eikenella corrodens] 42.7 2e-09
>P31586 Type II secretion system core protein G [Pectobacterium
carotovorum subsp. carotovorum]
Length=156
Score = 53.5 bits (127), Expect = 3e-13
Identities = 48/146 (33%), Positives = 71/146 (49%), Gaps = 19/146 (13%)
Query 4 KSQYSQSGFTLVELMVVIVIVGILASLIFLNISG----VDKRKAMQSRDFF--LLDLQKI 57
+S Y Q GFTL+E+MVVIVI+G+LASL+ N+ G D++KA+ LD+ K+
Sbjct 15 QSGYRQRGFTLLEIMVVIVILGVLASLVVPNLMGNKEKADRQKAVSDIVSLESALDMYKL 74
Query 58 NKE---SIDQGRVFALITHPETNVNPFGYELVEYFDQSQNAILDEKKKWQKYQDFQIRNL 114
+ S +QG + AL+T P P Y Y + + W D+Q+ N
Sbjct 75 DNNRYPSTEQG-LKALVTKPTVQPEPRNYPADGYIRRL------PQDPWG--TDYQLLNP 125
Query 115 PRTVGFSVESLDQENQNATNQDLIGN 140
+ + SL + T D IGN
Sbjct 126 GQHGKLDIFSLGPDGMPGTEDD-IGN 150
>P45773 Type II secretion system core protein G [Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=146
Score = 49.3 bits (116), Expect = 9e-12
Identities = 37/90 (41%), Positives = 52/90 (58%), Gaps = 13/90 (14%)
Query 4 KSQYSQSGFTLVELMVVIVIVGILASLIFLNISGVDKRKAMQSRDFF-------LLDLQK 56
K Q+GFTL+E+MVV+VI+GILAS + N+ G +K KA Q + LD+ K
Sbjct 2 KKMRKQTGFTLLEVMVVVVILGILASFVVPNLLG-NKEKADQQKAVTDIVALENALDMYK 60
Query 57 INKE---SIDQGRVFALITHPETNVNPFGY 83
++ + DQG + AL+T P TN P Y
Sbjct 61 LDNSVYPTTDQG-LEALVTKP-TNPEPRNY 88
>P31733 Type II secretion system core protein G [Aeromonas hydrophila]
Length=143
Score = 47.4 bits (111), Expect = 4e-11
Identities = 34/84 (40%), Positives = 47/84 (56%), Gaps = 10/84 (12%)
Query 9 QSGFTLVELMVVIVIVGILASLIFLNISGVDKRKAMQSRDFF-------LLDLQKI--NK 59
QSGFTL+E+MVVIVI+GILASL+ N+ G +K KA Q + LD+ K+ N+
Sbjct 6 QSGFTLLEVMVVIVILGILASLVVPNLMG-NKEKADQQKAVSDIVALENALDMYKLDNNR 64
Query 60 ESIDQGRVFALITHPETNVNPFGY 83
+ + AL+ P P Y
Sbjct 65 YPTTEQGLDALVNKPTAAPEPRSY 88
>P31585 Type II secretion system core protein G [Dickeya chrysanthemi]
Length=153
Score = 47.4 bits (111), Expect = 5e-11
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 10/84 (12%)
Query 9 QSGFTLVELMVVIVIVGILASLIFLNISG----VDKRKAMQSRDFF--LLDLQKINKE-- 60
Q GFTL+E+MVVIVI+G+LASL+ N+ G DK+KA+ LD+ K++
Sbjct 5 QRGFTLLEIMVVIVILGVLASLVVPNLMGNKEKADKQKAVSDIVALESQLDMYKLDNSRY 64
Query 61 -SIDQGRVFALITHPETNVNPFGY 83
+ +QG + AL+ P T P Y
Sbjct 65 PTTEQG-LGALVKKPTTPPEPRNY 87
>A0A0H3HDD6 Type II secretion system core protein G [Klebsiella
michiganensis (strain ATCC 8724 / DSM 4798 / JCM 20051 / NBRC
3318 / NRRL B-199 / KCTC 1686 / BUCSAV 143 / CCM 1901)]
Length=142
Score = 45.4 bits (106), Expect = 2e-10
Identities = 35/80 (44%), Positives = 50/80 (63%), Gaps = 18/80 (23%)
Query 8 SQSGFTLVELMVVIVIVGILASLIFLNISG----VDKRK------AMQSRDFFLLDLQKI 57
SQ GFTL+E+MVVIVI+GILASL+ N+ G D++K A++S LD+ K+
Sbjct 5 SQRGFTLLEIMVVIVIMGILASLVVPNLMGNKDKADRQKVVSDIVALES----ALDMYKL 60
Query 58 NKE---SIDQGRVFALITHP 74
+ + +QG + ALIT P
Sbjct 61 DNSRYPTTEQG-LQALITKP 79
>P41442 Type II secretion system core protein G [Escherichia coli
(strain K12)]
Length=145
Score = 45.1 bits (105), Expect = 3e-10
Identities = 23/40 (58%), Positives = 31/40 (78%), Gaps = 4/40 (10%)
Query 9 QSGFTLVELMVVIVIVGILASLIFLNISG----VDKRKAM 44
Q GFTL+E+MVVIVI+G+LASL+ N+ G DK+KA+
Sbjct 7 QRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQKAV 46
>P31735 Type II secretion system protein H [Aeromonas hydrophila]
Length=183
Score = 44.3 bits (103), Expect = 9e-10
Identities = 41/189 (22%), Positives = 90/189 (48%), Gaps = 33/189 (17%)
Query 6 QYSQSGFTLVELMVVIVIVGILASLIFLNISGV--DKRKAMQSRDFFLLDLQKINKESID 63
++ QSGFTL+E+++V +++G++A+ + L++ G D+ Q+R F+ LQ+ + S+
Sbjct 3 RHRQSGFTLLEVLLVAMLMGLVATAVTLSMGGARGDRELDKQARR-FMATLQQAQEYSVM 61
Query 64 QGRVFALITHPETNVNPFGYELVEYFDQSQNAILDEKKKWQKYQDFQIR---NLPRTVGF 120
GR+ L + G++ + Q A D +KWQ +I LP T+
Sbjct 62 DGRLVGL------RIEDHGWQFM------QRAAKD--RKWQALTGDKILGQVQLPDTMLL 107
Query 121 SVE--------SLDQENQNATNQDLIGNQAPKMIWYGNGEVRPVRIQFYYDQQPIG--DV 170
++E D++ + ++ + P+++ + GE+ P + + +
Sbjct 108 AIELEGFSWRTESDEKTERGRDEK---ERTPQVLIFPGGELSPFVLTLTQQDEDVRYLRT 164
Query 171 IEVDHLGKI 179
++ D G++
Sbjct 165 VKADEFGRL 173
>P15747 Type II secretion system protein H [Klebsiella pneumoniae]
Length=170
Score = 43.9 bits (102), Expect = 1e-09
Identities = 32/150 (21%), Positives = 66/150 (44%), Gaps = 6/150 (4%)
Query 9 QSGFTLVELMVVIVIVGILASLIFLNISGVDKRKAMQSRDFFLLDLQKINKESIDQGRVF 68
Q GFTL+E+M++++++G+ A ++ L A Q+ F L+ + + + G+ F
Sbjct 3 QRGFTLLEMMLILLLMGVSAGMVLLAFPASRDDSAAQTLARFEAQLRFVQQRGLQTGQFF 62
Query 69 ALITHPETNVNPFGYELVEYFDQSQNAILDEKKKWQKYQDFQIRNLPRTVGFSVESLDQE 128
+ HP+ + + ++E D + A D+ W Y+ +R S+
Sbjct 63 GVSVHPDR----WQFLVLEARDGADPAPADD--GWSGYRWLPLRAGRVATSGSIAGGKLN 116
Query 129 NQNATNQDLIGNQAPKMIWYGNGEVRPVRI 158
A + P ++ + GE+ P R+
Sbjct 117 LAFAQGEAWTPGDNPDVLIFPGGEMTPFRL 146
>P15746 Type II secretion system core protein G [Klebsiella pneumoniae]
Length=140
Score = 42.7 bits (99), Expect = 2e-09
Identities = 22/35 (63%), Positives = 29/35 (83%), Gaps = 1/35 (3%)
Query 9 QSGFTLVELMVVIVIVGILASLIFLNISGVDKRKA 43
Q GFTL+E+MVVIVI+G+LASL+ N+ G +K KA
Sbjct 4 QRGFTLLEIMVVIVILGVLASLVVPNLMG-NKEKA 37
>P35646 Fimbrial protein EcpB [Eikenella corrodens]
Length=159
Score = 42.7 bits (99), Expect = 2e-09
Identities = 27/56 (48%), Positives = 34/56 (61%), Gaps = 1/56 (2%)
Query 7 YSQSGFTLVELMVVIVIVGILASLIFLNISGVDKRKAMQSRDFFLLDLQKINKESI 62
Y Q GFTL+ELM+VI I+GILA+ I L + KA +R F+ L K ESI
Sbjct 2 YKQKGFTLIELMIVIAIIGILAA-IALPLYQDHMAKAQINRVFYELGSTKTAVESI 56
Lambda K H a alpha
0.322 0.139 0.402 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 181050
Database: 03146487e522ce70de2666de95d36062.SwissProt.fasta
Posted date: May 9, 2024 4:27 AM
Number of letters in database: 1,537
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
