BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c11b03974d02b7a1ca43d2d427cd6713.SwissProt.fasta
15 sequences; 4,443 total letters
Query= ACIAD2366
Length=297
Score E
Sequences producing significant alignments: (Bits) Value
P0A152 Probable chromosome-partitioning protein ParB [Pseudomonas... 296 4e-104
P0A151 Probable chromosome-partitioning protein ParB [Pseudomonas... 296 4e-104
Q83AH2 Probable chromosome-partitioning protein ParB [Coxiella bu... 276 2e-96
Q87BY1 Probable chromosome-partitioning protein ParB [Xylella fas... 246 5e-84
Q9KNG7 Probable chromosome-partitioning protein ParB [Vibrio chol... 244 9e-84
Q9PB63 Probable chromosome-partitioning protein ParB [Xylella fas... 242 1e-82
Q9JW77 Probable chromosome-partitioning protein ParB [Neisseria m... 218 3e-73
P0CAV8 Chromosome-partitioning protein ParB [Caulobacter vibrioid... 216 2e-72
B8GW30 Chromosome-partitioning protein ParB [Caulobacter vibrioid... 216 2e-72
Q9JXP5 Probable chromosome-partitioning protein ParB [Neisseria m... 213 2e-71
Q72H91 Chromosome-partitioning protein Spo0J [Thermus thermophilu... 196 6e-65
Q9RYD8 Probable chromosome 1-partitioning protein ParB [Deinococc... 195 1e-64
P26497 Stage 0 sporulation protein J [Bacillus subtilis (strain 1... 180 8e-59
P37524 Nucleoid occlusion protein [Bacillus subtilis (strain 168)] 155 3e-49
P07674 Transcriptional repressor protein KorB [Escherichia coli] 71.6 1e-17
>P0A152 Probable chromosome-partitioning protein ParB [Pseudomonas
putida]
Length=290
Score = 296 bits (758), Expect = 4e-104
Identities = 157/290 (54%), Positives = 211/290 (73%), Gaps = 5/290 (2%)
Query 1 MTIKKRGLAKGRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQ 60
M +KKRGL GRGLDALL L+ +A ID +L+ + V L++RG+YQPRR + +
Sbjct 1 MAVKKRGL--GRGLDALLSGPSVSALEEQAVKIDQKELQHLPVELVQRGKYQPRRDMDPE 58
Query 61 DLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQ 120
L+ELA SI HGVMQPIV+RPI D +Y EIIAGERRWRA Q AGL +PA+VR++ D+
Sbjct 59 ALEELAHSIRNHGVMQPIVVRPIGDNRY--EIIAGERRWRATQQAGLDTIPAMVREVPDE 116
Query 121 VAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLD 180
AIA+ALIENIQR+DLNP+++A+ALQR EF L+ Q++A+ VGK+R TV+NLLRL++L
Sbjct 117 AAIAMALIENIQREDLNPLEEAMALQRLQQEFELTQQQVADAVGKSRVTVANLLRLITLP 176
Query 181 DVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPKQEKP 240
D IK + G L+MGHARA+L L Q A+ V+ + L+VRQTE LVR W + K +
Sbjct 177 DAIKTMLAHGDLEMGHARALLGLDENRQEEGARHVVARGLTVRQTEALVRQWLSDKPDPV 236
Query 241 K-AQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGIL 289
+ ++ PDI +L RL+ER G+ V+I H +GKG+LVI+Y+SLDEL G+L
Sbjct 237 EPSKPDPDIARLEQRLAERLGSAVQIRHGNKGKGQLVIRYNSLDELQGVL 286
>P0A151 Probable chromosome-partitioning protein ParB [Pseudomonas
putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB
11950 / KT2440)]
Length=290
Score = 296 bits (758), Expect = 4e-104
Identities = 157/290 (54%), Positives = 211/290 (73%), Gaps = 5/290 (2%)
Query 1 MTIKKRGLAKGRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQ 60
M +KKRGL GRGLDALL L+ +A ID +L+ + V L++RG+YQPRR + +
Sbjct 1 MAVKKRGL--GRGLDALLSGPSVSALEEQAVKIDQKELQHLPVELVQRGKYQPRRDMDPE 58
Query 61 DLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQ 120
L+ELA SI HGVMQPIV+RPI D +Y EIIAGERRWRA Q AGL +PA+VR++ D+
Sbjct 59 ALEELAHSIRNHGVMQPIVVRPIGDNRY--EIIAGERRWRATQQAGLDTIPAMVREVPDE 116
Query 121 VAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLD 180
AIA+ALIENIQR+DLNP+++A+ALQR EF L+ Q++A+ VGK+R TV+NLLRL++L
Sbjct 117 AAIAMALIENIQREDLNPLEEAMALQRLQQEFELTQQQVADAVGKSRVTVANLLRLITLP 176
Query 181 DVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPKQEKP 240
D IK + G L+MGHARA+L L Q A+ V+ + L+VRQTE LVR W + K +
Sbjct 177 DAIKTMLAHGDLEMGHARALLGLDENRQEEGARHVVARGLTVRQTEALVRQWLSDKPDPV 236
Query 241 K-AQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGIL 289
+ ++ PDI +L RL+ER G+ V+I H +GKG+LVI+Y+SLDEL G+L
Sbjct 237 EPSKPDPDIARLEQRLAERLGSAVQIRHGNKGKGQLVIRYNSLDELQGVL 286
>Q83AH2 Probable chromosome-partitioning protein ParB [Coxiella
burnetii (strain RSA 493 / Nine Mile phase I)]
Length=290
Score = 276 bits (707), Expect = 2e-96
Identities = 146/291 (50%), Positives = 206/291 (71%), Gaps = 12/291 (4%)
Query 4 KKRGLAKGR---GLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQ 60
+KRGL +G GL+ LL I L A +LK++ +++++ G YQPRR + +
Sbjct 5 QKRGLGRGLSDLGLNELLTEINDASL-----ADSKTELKKLTIDVIQPGRYQPRRQMDKD 59
Query 61 DLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQ 120
L+ELA SI G++QPIV+RP+ YEIIAGERRWRAAQLAGLKEVPA++R + D+
Sbjct 60 ALEELANSIRAQGIIQPIVVRPVGQR---YEIIAGERRWRAAQLAGLKEVPAVIRPITDE 116
Query 121 VAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLD 180
AI ++LIENIQRQ+LN I++A ALQR DEF ++H+EIAE VGK+RT+V+N LRLL L+
Sbjct 117 AAITMSLIENIQRQNLNAIEEAAALQRLLDEFKMTHEEIAEAVGKSRTSVTNSLRLLKLN 176
Query 181 DVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAP-KQEK 239
+K +++G LDMGHARA+LAL+ Q A ++I++ LSVR+TE+L++ W + K
Sbjct 177 PDVKALLEQGHLDMGHARALLALEGFQQSEAANIIIKRALSVRETEKLIQHWQSEGKSSA 236
Query 240 PKAQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGILN 290
+ + PD+ +L H LS++ GA V I H +GKGKL+I Y+S DEL+GIL+
Sbjct 237 NRPSMDPDVARLQHHLSDKLGAAVTIRHGAKGKGKLIIHYNSADELEGILD 287
>Q87BY1 Probable chromosome-partitioning protein ParB [Xylella
fastidiosa (strain Temecula1 / ATCC 700964)]
Length=310
Score = 246 bits (627), Expect = 5e-84
Identities = 143/300 (48%), Positives = 192/300 (64%), Gaps = 15/300 (5%)
Query 1 MTIKKRGLAKGRGLDALLGSIQKEKLQ--LEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQ 58
+ +KKRGL GRGL+ALLGS + + + + L+ + L+ +YQPRR +
Sbjct 6 LPLKKRGL--GRGLEALLGSKGGSSVPPTVAQEQLPGEVLRTLQTTQLQPSKYQPRREMS 63
Query 59 EQDLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLN 118
E L ELA SI+ GV+QPI++R + + + EI+AGERRWRA+QLAGL EVP IVR+L+
Sbjct 64 EAKLAELADSIKAQGVIQPIIVRELDVDMF--EIVAGERRWRASQLAGLTEVPVIVRELD 121
Query 119 DQVAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLS 178
D+ +A+ALIENIQR+DLNP+++A ALQR DEF L+H E AE VG++R VSNLLRLL
Sbjct 122 DRTVVAMALIENIQREDLNPLEEAQALQRLIDEFSLTHAEAAEAVGRSRAAVSNLLRLLE 181
Query 179 LDDVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPK-- 236
L I+ ++ QL+MGHARA+L L + +AK ++ SVR+ E + + A K
Sbjct 182 LPLGIRTLLESHQLEMGHARALLTLTPELAAKLAKEAADQGWSVREVEHRAQQFAAGKVP 241
Query 237 ---QEKPK----AQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGIL 289
+K K A PDI L LSER G V I+H + GKGKLVI Y LD LDG+L
Sbjct 242 DIRDKKSKSLASAPAQPDIASLETELSERLGTKVAINHGRTGKGKLVIHYTDLDVLDGVL 301
>Q9KNG7 Probable chromosome-partitioning protein ParB [Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=293
Score = 244 bits (624), Expect = 9e-84
Identities = 138/285 (48%), Positives = 193/285 (68%), Gaps = 12/285 (4%)
Query 5 KRGLAKGRGLDALLG--SIQKEKLQ---LEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQE 59
KRGL G+GLDALL S+ +EK Q L G+L + ++ LK G YQPR+ +
Sbjct 3 KRGL--GKGLDALLATSSLAREKQQVASLSQSMSAEGELADLSISNLKPGIYQPRKDLSP 60
Query 60 QDLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLND 119
+ L+ELAASI+ G++QPIV+R + YEIIAGERRWRAA+ AGLK+VP +++ + D
Sbjct 61 EALEELAASIQSQGIIQPIVVRHLPTG--GYEIIAGERRWRAAKQAGLKQVPCLIKQVED 118
Query 120 QVAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSL 179
+ AIA+ALIENIQR+DLN +++A AL+R +EF L+HQ++AE +GK+RTTV+NLLRL L
Sbjct 119 RGAIAMALIENIQREDLNAMEEAQALERLQNEFNLTHQQVAEVIGKSRTTVTNLLRLNQL 178
Query 180 DDVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPKQEK 239
D +K ++ QL+MGHARA+L L+ + Q+ IA+ V +K L+VRQTEQLV+ + +
Sbjct 179 SDDVKRLLETKQLEMGHARALLMLEGEQQVEIAQQVAKKQLTVRQTEQLVKKCLSDPSDA 238
Query 240 PKAQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDE 284
+I+QL+ LSE+ A V I GK K+ I SLDE
Sbjct 239 KNVSEDLEIQQLSQNLSEKLAAKVSIVRTPNGKSKVTI---SLDE 280
>Q9PB63 Probable chromosome-partitioning protein ParB [Xylella
fastidiosa (strain 9a5c)]
Length=310
Score = 242 bits (618), Expect = 1e-82
Identities = 141/301 (47%), Positives = 189/301 (63%), Gaps = 21/301 (7%)
Query 3 IKKRGLAKGRGLDALLGSIQKEKLQLEAQAIDHGQL-----KQIDVNLLKRGEYQPRRFI 57
+KKRGL GRGL+ALLGS + + GQL + + + L+ +YQPRR +
Sbjct 8 LKKRGL--GRGLEALLGSKGGSSVP---PTVAEGQLPGEVLRTLQITQLQPSKYQPRREM 62
Query 58 QEQDLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDL 117
E L ELA SI+ GV+QPI++R + + + EI+AGERRWRA+QLAGL EVP +VR+L
Sbjct 63 SEPKLAELADSIKAQGVIQPIIVRELDVDMF--EIVAGERRWRASQLAGLTEVPVLVREL 120
Query 118 NDQVAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLL 177
+D+ +A+ALIENIQR+DLNP+++A ALQR DEF L+H E AE VG++R VSNLLRLL
Sbjct 121 DDRTVVAMALIENIQREDLNPLEEAQALQRLIDEFSLTHAEAAEAVGRSRAAVSNLLRLL 180
Query 178 SLDDVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPK- 236
L I+ +Q +L+MGHARA+L L + +AK ++ SVR+ E + + A K
Sbjct 181 ELPLGIRTLLQSRRLEMGHARALLTLAPELADKLAKEAADQGWSVREVEHRAQQFAAGKV 240
Query 237 --------QEKPKAQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGI 288
+ A PDI L LSE G V I+H + GKGKLVI Y LD LDG+
Sbjct 241 PDIRDKKSKSPASAPAQPDIASLETELSEHLGTKVAINHGRAGKGKLVIHYTDLDVLDGV 300
Query 289 L 289
L
Sbjct 301 L 301
>Q9JW77 Probable chromosome-partitioning protein ParB [Neisseria
meningitidis serogroup A / serotype 4A (strain DSM 15465
/ Z2491)]
Length=286
Score = 218 bits (554), Expect = 3e-73
Identities = 114/279 (41%), Positives = 182/279 (65%), Gaps = 10/279 (4%)
Query 11 GRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQDLKELAASIE 70
GRGLD+LL + A +L + V ++ G YQ R I ++ L+ELA SI+
Sbjct 9 GRGLDSLLAN--------GADNSSGDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIK 60
Query 71 KHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQVAIALALIEN 130
GV+QP+++R + YE+IAGERRWRAAQ+AGL E+PA+++ ++D+ A+A+ LIEN
Sbjct 61 AQGVIQPVIVR--EHGLSRYELIAGERRWRAAQIAGLTEIPAVIKTISDETALAMGLIEN 118
Query 131 IQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLDDVIKDFMQEG 190
+QR++LNPI++A L+R DEFGL+H+ IA+ VGK+R+ +SN LRLLSL + +++ + +
Sbjct 119 LQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISNSLRLLSLPEPVQEMLYQR 178
Query 191 QLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPKQEKPKAQVAPDIEQ 250
+L+MGHARA+L L +Q+ +A+ ++ SVR+ E+ + K+ +PK A DI +
Sbjct 179 RLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQAALQNKRPEPKKTAAADIGR 238
Query 251 LTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGIL 289
L L+E+ G N +I KGK+++ + + + D IL
Sbjct 239 LNDLLTEKLGVNAEIKTANHKKGKIILHFDTPETFDHIL 277
>P0CAV8 Chromosome-partitioning protein ParB [Caulobacter vibrioides
(strain ATCC 19089 / CB15)]
Length=304
Score = 216 bits (550), Expect = 2e-72
Identities = 125/297 (42%), Positives = 186/297 (63%), Gaps = 16/297 (5%)
Query 1 MTIKKRGLAKGRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQ 60
M+ +RGL GRGL ALLG + Q + + G ++ + +L+R QPRR +E+
Sbjct 11 MSEGRRGL--GRGLSALLGEVDAAPAQAPGEQL--GGSREAPIEILQRNPDQPRRTFREE 66
Query 61 DLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQ 120
DL++L+ SI + GV+QPI++RP D Y+I+AGERRWRAAQ AGLK VP +VR+L+D
Sbjct 67 DLEDLSNSIREKGVLQPILVRPSPDTAGEYQIVAGERRWRAAQRAGLKTVPIMVRELDDL 126
Query 121 VAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLD 180
+ + +IEN+QR DLN +++AL+ + ++F + + IA+T+GK+R+ V+N +RLL+L
Sbjct 127 AVLEIGIIENVQRADLNVLEEALSYKVLMEKFERTQENIAQTIGKSRSHVANTMRLLALP 186
Query 181 DVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAP----- 235
D ++ ++ G+L GHARAI A A D +A+AK +IE LSVR+TE L R AP
Sbjct 187 DEVQSYLVSGELTAGHARAIAA--AADPVALAKQIIEGGLSVRETEALAR--KAPNLSAG 242
Query 236 --KQEKPKAQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGILN 290
K +P D + L LS G +V IDH + G L I Y +L++LD + N
Sbjct 243 KSKGGRPPRVKDTDTQALESDLSSVLGLDVSIDH-RGSTGTLTITYATLEQLDDLCN 298
>B8GW30 Chromosome-partitioning protein ParB [Caulobacter vibrioides
(strain NA1000 / CB15N)]
Length=304
Score = 216 bits (550), Expect = 2e-72
Identities = 125/297 (42%), Positives = 186/297 (63%), Gaps = 16/297 (5%)
Query 1 MTIKKRGLAKGRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQ 60
M+ +RGL GRGL ALLG + Q + + G ++ + +L+R QPRR +E+
Sbjct 11 MSEGRRGL--GRGLSALLGEVDAAPAQAPGEQL--GGSREAPIEILQRNPDQPRRTFREE 66
Query 61 DLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQ 120
DL++L+ SI + GV+QPI++RP D Y+I+AGERRWRAAQ AGLK VP +VR+L+D
Sbjct 67 DLEDLSNSIREKGVLQPILVRPSPDTAGEYQIVAGERRWRAAQRAGLKTVPIMVRELDDL 126
Query 121 VAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLD 180
+ + +IEN+QR DLN +++AL+ + ++F + + IA+T+GK+R+ V+N +RLL+L
Sbjct 127 AVLEIGIIENVQRADLNVLEEALSYKVLMEKFERTQENIAQTIGKSRSHVANTMRLLALP 186
Query 181 DVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAP----- 235
D ++ ++ G+L GHARAI A A D +A+AK +IE LSVR+TE L R AP
Sbjct 187 DEVQSYLVSGELTAGHARAIAA--AADPVALAKQIIEGGLSVRETEALAR--KAPNLSAG 242
Query 236 --KQEKPKAQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGILN 290
K +P D + L LS G +V IDH + G L I Y +L++LD + N
Sbjct 243 KSKGGRPPRVKDTDTQALESDLSSVLGLDVSIDH-RGSTGTLTITYATLEQLDDLCN 298
>Q9JXP5 Probable chromosome-partitioning protein ParB [Neisseria
meningitidis serogroup B (strain MC58)]
Length=286
Score = 213 bits (541), Expect = 2e-71
Identities = 111/279 (40%), Positives = 181/279 (65%), Gaps = 10/279 (4%)
Query 11 GRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQDLKELAASIE 70
GRGLD+LL + A +L + V ++ G YQ R I ++ L+ELA SI+
Sbjct 9 GRGLDSLLAN--------GADNSSGDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIK 60
Query 71 KHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQVAIALALIEN 130
GV+QP+++R + YE+IAGERRWRAAQ+AGL E+PA+++ ++D+ A+A+ LIEN
Sbjct 61 AQGVIQPVIVR--EHGLSRYELIAGERRWRAAQIAGLTEIPAVIKTISDETALAMGLIEN 118
Query 131 IQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLDDVIKDFMQEG 190
+QR++LNPI++A L+R DEFGL+H+ IA+ VGK+R+ +SN LRLLSL + +++ + +
Sbjct 119 LQRENLNPIEEAQGLKRLADEFGLTHETIAQAVGKSRSAISNSLRLLSLPEPVQEMLYQR 178
Query 191 QLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPKQEKPKAQVAPDIEQ 250
+L+MGHARA+L L +Q+ +A+ ++ SVR+ E+ + K+ +PK A DI +
Sbjct 179 RLEMGHARALLTLPVVEQLELAQKAVKNGWSVREVERRSQAALQNKRPEPKKTAAADIGR 238
Query 251 LTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGIL 289
L L+E+ G N ++ KG++V+ + + + +L
Sbjct 239 LNDLLTEKLGVNAEVKTANHKKGRIVLYFDTPETFGHLL 277
>Q72H91 Chromosome-partitioning protein Spo0J [Thermus thermophilus
(strain ATCC BAA-163 / DSM 7039 / HB27)]
Length=269
Score = 196 bits (497), Expect = 6e-65
Identities = 125/290 (43%), Positives = 182/290 (63%), Gaps = 29/290 (10%)
Query 1 MTIKKRGLAKGRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQ 60
M+ K GL GRGL+ALL ++L +I + QPR+ E+
Sbjct 1 MSRKPSGL--GRGLEALLPKTGAGVVRLPLASI-------------RPNPRQPRKRFAEE 45
Query 61 DLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQ 120
LKELA SI + G++QP+++RP D YE++AGERR+RAA +AGL+EVPA+V+DL D+
Sbjct 46 SLKELADSIREKGLLQPLLVRPQGD---GYELVAGERRYRAALMAGLQEVPAVVKDLTDR 102
Query 121 VAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLD 180
A+ LAL+EN+QR+DL+P+++A Q E GL+ +E+A VGKAR+TV+N LRLL L
Sbjct 103 EALELALVENLQREDLSPVEEARGYQALL-EMGLTQEEVARRVGKARSTVANALRLLQLP 161
Query 181 DVIKDFMQEGQLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQL-VRDWNAPKQEK 239
+ ++ G++ GHARA+L L+ +D++ K ++EK LSVRQ E L R APK+
Sbjct 162 PEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKR-- 219
Query 240 PKAQVAPDIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGIL 289
A+ +P L+ LS G V++ K KGK+VIQY SL+EL+ +L
Sbjct 220 -SAEPSP----LSLELSRHLGLPVRVVGGK--KGKVVIQYRSLEELEALL 262
>Q9RYD8 Probable chromosome 1-partitioning protein ParB [Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871
/ CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422
/ R1)]
Length=288
Score = 195 bits (496), Expect = 1e-64
Identities = 117/288 (41%), Positives = 177/288 (61%), Gaps = 21/288 (7%)
Query 11 GRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQDLKELAASIE 70
GRGLDALL +K + AQA Q++ + + + + YQPR+ + + L ELA SI
Sbjct 8 GRGLDALL----TKKGEPVAQAGTGTQVQTLKIERIAQAAYQPRQVFEPESLAELAQSIR 63
Query 71 KHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQVAIALALIEN 130
+ GV+QP+++RP D A+EI+AGERRWRA+QLAGL E+P ++RDL D+ A+ +A++EN
Sbjct 64 EKGVLQPLLVRPRGD---AFEIVAGERRWRASQLAGLTELPVMIRDLGDREALEIAIVEN 120
Query 131 IQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLDDVIKDFMQEG 190
+QR+DL P+++A A Q D+ GL+ + +A+ VGK R+TV+N LRLL+L + + + EG
Sbjct 121 LQREDLGPLEEARAYQALLDQ-GLNQEGVAQAVGKGRSTVTNALRLLTLPEPVLRALDEG 179
Query 191 QLDMGHARAILALKAKDQIAIAKVVIEKNLSVRQTEQLVRDWNAPKQEKPKAQVAP---- 246
+ HARA+L D++ + + + L+VR+ E L R+ + + K Q AP
Sbjct 180 SISASHARAVLTQPEADRLWAFEQIRSRGLNVREAEALKRE----RGGRDKGQGAPIKVN 235
Query 247 ---DIEQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGILNI 291
QL LS R G VKI + KG++ + Y S +ELD IL I
Sbjct 236 PPRAYRQLELDLSRRTGTRVKI--TGEDKGRVELNYGSREELDRILQI 281
>P26497 Stage 0 sporulation protein J [Bacillus subtilis (strain
168)]
Length=282
Score = 180 bits (457), Expect = 8e-59
Identities = 104/285 (36%), Positives = 175/285 (61%), Gaps = 18/285 (6%)
Query 11 GRGLDALLGSIQKEKLQLEAQAIDHGQLKQIDVNLLKRGEYQPRRFIQEQDLKELAASIE 70
G+G++AL + + +E +I + L+ YQPR+ ++ L EL S+
Sbjct 6 GKGINALFNQVDLSEETVE----------EIKIADLRPNPYQPRKHFDDEALAELKESVL 55
Query 71 KHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIVRDLNDQVAIALALIEN 130
+HG++QP+++R Y+I+AGERR+RAA+LAGL VPAIVR+L++ + +AL+EN
Sbjct 56 QHGILQPLIVRK---SLKGYDIVAGERRFRAAKLAGLDTVPAIVRELSEALMREIALLEN 112
Query 131 IQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSLDDVIKDFMQEG 190
+QR+DL+P+++A A L+ +++A+ +GK+R ++N LRLL+L + I+ + EG
Sbjct 113 LQREDLSPLEEAQAYDSLLKHLDLTQEQLAKRLGKSRPHIANHLRLLTLPENIQQLIAEG 172
Query 191 QLDMGHARAILALKAKDQI-AIAKVVIEKNLSVRQTEQLVR--DWNAPKQEKPKAQVAPD 247
L MGH R +L LK K+++ + + VI + L+VRQ EQL++ + N P++ K K V
Sbjct 173 TLSMGHGRTLLGLKNKNKLEPLVQKVIAEQLNVRQLEQLIQQLNQNVPRETKKKEPVKDA 232
Query 248 I-EQLTHRLSERFGANVKIDHNKQGKGKLVIQYHSLDELDGILNI 291
+ ++ L FG V I K+ KGK+ I++ S ++LD IL +
Sbjct 233 VLKERESYLQNYFGTTVNIKRQKK-KGKIEIEFFSNEDLDRILEL 276
>P37524 Nucleoid occlusion protein [Bacillus subtilis (strain
168)]
Length=283
Score = 155 bits (393), Expect = 3e-49
Identities = 80/206 (39%), Positives = 134/206 (65%), Gaps = 2/206 (1%)
Query 37 QLKQIDVNLLKRGEYQPRRFIQEQDLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGE 96
++ +I VN + +QPR ++ +KELA +I HG++QPIV+R ++E YE+IAGE
Sbjct 29 EILEIPVNAIVPNRFQPRTIFSDEKIKELAMTIHTHGIIQPIVVRHTEEEGQ-YELIAGE 87
Query 97 RRWRAAQLAGLKEVPAIVRDLNDQVAIALALIENIQRQDLNPIDQALALQRFHDEFGLSH 156
RRWRA Q +++PAI++D +D ++ALIEN+QR++L+ I++A A R + L+
Sbjct 88 RRWRAVQSLEWEKIPAIIKDFSDTETASVALIENLQREELSSIEEAHAYARLLELHDLTQ 147
Query 157 QEIAETVGKARTTVSNLLRLLSLDDVIKDFMQEGQLDMGHARAILALKAKD-QIAIAKVV 215
+ +A+ +GK ++T++N LRLL L +++ + E ++ HARA++ LK + Q+ + +
Sbjct 148 EALAQRLGKGQSTIANKLRLLKLPQPVQEAIMEKKITERHARALIPLKQPELQVTLLTEI 207
Query 216 IEKNLSVRQTEQLVRDWNAPKQEKPK 241
IEK+L+V+QTE V Q KPK
Sbjct 208 IEKSLNVKQTEDRVVKMLEQGQRKPK 233
>P07674 Transcriptional repressor protein KorB [Escherichia coli]
Length=358
Score = 71.6 bits (174), Expect = 1e-17
Identities = 59/193 (31%), Positives = 98/193 (51%), Gaps = 14/193 (7%)
Query 7 GLAKGRGLDALLGSIQKEKLQLEAQAIDHGQLK--QIDVNLLKRGEYQPRRF----IQEQ 60
G A+ GL L SI L+A A G ++D++L+ +QPR +
Sbjct 22 GAAQPSGLG--LDSIGDLSSLLDAPAASQGGSGPIELDLDLIDEDPHQPRTADNPGFSPE 79
Query 61 DLKELAASIEKHGVMQPIVIRPIQDEQYAYEIIAGERRWRAAQLAGLKEVPAIV-RDLND 119
+ E+ A+I++ GV PI +R Q++ Y I G RR+R ++ AG K +PA + D N+
Sbjct 80 SIAEIGATIKERGVKSPISVRENQEQPGRYIINHGARRYRGSKWAGKKSIPAFIDNDYNE 139
Query 120 QVAIALALIENIQRQDLNPIDQALALQRFHDEFGLSHQEIAETVGKARTTVSNLLRLLSL 179
A +IEN+QR +L P + A + R + G +IA+ +GK+ ++ + LL L
Sbjct 140 ----ADQVIENLQRNELTPREIADFIGRELAK-GKKKGDIAKEIGKSPAFITQHVTLLDL 194
Query 180 DDVIKDFMQEGQL 192
+ I D G++
Sbjct 195 PEKIADAFNTGRV 207
Lambda K H a alpha
0.321 0.137 0.383 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 949536
Database: c11b03974d02b7a1ca43d2d427cd6713.SwissProt.fasta
Posted date: May 8, 2024 7:52 AM
Number of letters in database: 4,443
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
