BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 66f21aed6b1b486e083fad20f15a84d0.SwissProt.fasta
           39 sequences; 6,106 total letters



Query= ACIAD2446

Length=97
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q12S40 DNA-binding protein Fis [Shewanella denitrificans (strain ...  95.1    2e-30
Q2NWQ0 DNA-binding protein Fis [Sodalis glossinidius (strain mors...  94.7    3e-30
B4EX21 DNA-binding protein Fis [Proteus mirabilis (strain HI4320)]    94.7    3e-30
P0CW84 DNA-binding protein Fis [Proteus hauseri]                      94.7    3e-30
Q088K0 DNA-binding protein Fis [Shewanella frigidimarina (strain ...  94.7    3e-30
A9L5E7 DNA-binding protein Fis [Shewanella baltica (strain OS195)]    94.7    3e-30
A6WTE7 DNA-binding protein Fis [Shewanella baltica (strain OS185)]    94.7    3e-30
A3D9J7 DNA-binding protein Fis [Shewanella baltica (strain OS155 ...  94.7    3e-30
B8E682 DNA-binding protein Fis [Shewanella baltica (strain OS223)]    94.7    3e-30
A1SAM2 DNA-binding protein Fis [Shewanella amazonensis (strain AT...  94.4    4e-30
O54367 DNA-binding protein Fis [Mannheimia haemolytica]               94.0    5e-30
Q7VNP1 DNA-binding protein Fis [Haemophilus ducreyi (strain 35000...  94.0    5e-30
B2K469 DNA-binding protein Fis [Yersinia pseudotuberculosis serot...  94.0    5e-30
Q1C1P4 DNA-binding protein Fis [Yersinia pestis bv. Antiqua (stra...  94.0    5e-30
A7FDQ0 DNA-binding protein Fis [Yersinia pseudotuberculosis serot...  94.0    5e-30
A1JRL7 DNA-binding protein Fis [Yersinia enterocolitica serotype ...  94.0    5e-30
O52540 DNA-binding protein Fis [Pectobacterium carotovorum]           94.0    5e-30
P44966 DNA-binding protein Fis [Haemophilus influenzae (strain AT...  94.0    6e-30
A5UIB9 DNA-binding protein Fis [Haemophilus influenzae (strain Pi...  94.0    6e-30
A5UD91 DNA-binding protein Fis [Haemophilus influenzae (strain Pi...  94.0    6e-30
Q4QLT0 DNA-binding protein Fis [Haemophilus influenzae (strain 86...  94.0    6e-30
B1KQE6 DNA-binding protein Fis [Shewanella woodyi (strain ATCC 51...  94.0    6e-30
A8G0V0 DNA-binding protein Fis [Shewanella sediminis (strain HAW-...  94.0    6e-30
B8CHY1 DNA-binding protein Fis [Shewanella piezotolerans (strain ...  94.0    6e-30
A8GZI0 DNA-binding protein Fis [Shewanella pealeana (strain ATCC ...  94.0    6e-30
B0TJ39 DNA-binding protein Fis [Shewanella halifaxensis (strain H...  94.0    6e-30
A3Q9Q3 DNA-binding protein Fis [Shewanella loihica (strain ATCC B...  93.6    8e-30
C4LAF3 DNA-binding protein Fis [Tolumonas auensis (strain DSM 918...  93.2    1e-29
P0A6R3 DNA-binding protein Fis [Escherichia coli (strain K12)]        92.8    2e-29
P0A6R9 DNA-binding protein Fis [Serratia marcescens]                  92.8    2e-29
P0A6R6 DNA-binding protein Fis [Salmonella typhimurium (strain LT...  92.8    2e-29
P0CW85 DNA-binding protein Fis [Proteus vulgaris]                     91.3    5e-29
O52537 DNA-binding protein Fis [Klebsiella pneumoniae]                89.4    3e-28
P10577 DNA-binding transcriptional regulator NtrC [Rhizobium meli...  68.6    2e-18
P45671 DNA-binding transcriptional regulator NtrC [Azospirillum b...  68.2    3e-18
Q04848 DNA-binding transcriptional regulator NtrC [Azorhizobium c...  62.4    4e-16
P09432 DNA-binding transcriptional regulator NtrC [Rhodobacter ca...  62.0    5e-16
P10576 DNA-binding transcriptional regulator NtrC [Bradyrhizobium...  59.7    3e-15
P17899 Transcriptional regulatory protein FlbD [Caulobacter vibri...  41.6    7e-09


>Q12S40 DNA-binding protein Fis [Shewanella denitrificans (strain 
OS217 / ATCC BAA-1090 / DSM 15013)]
Length=101

 Score = 95.1 bits (235),  Expect = 2e-30
 Identities = 43/71 (61%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++F+QL G++ S+VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFSQLDGQEASEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>Q2NWQ0 DNA-binding protein Fis [Sodalis glossinidius (strain 
morsitans)]
Length=98

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 42/71 (59%), Positives = 62/71 (87%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA+++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAQMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>B4EX21 DNA-binding protein Fis [Proteus mirabilis (strain HI4320)]
Length=98

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 42/71 (59%), Positives = 62/71 (87%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA+++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAQMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>P0CW84 DNA-binding protein Fis [Proteus hauseri]
Length=98

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 42/71 (59%), Positives = 62/71 (87%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA+++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAQMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>Q088K0 DNA-binding protein Fis [Shewanella frigidimarina (strain 
NCIMB 400)]
Length=101

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 43/71 (61%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++F+QL G++ S+VY+MVL E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFSQLDGQEASEVYEMVLCEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>A9L5E7 DNA-binding protein Fis [Shewanella baltica (strain OS195)]
Length=101

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 43/71 (61%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQL G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQLDGQEAQEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>A6WTE7 DNA-binding protein Fis [Shewanella baltica (strain OS185)]
Length=101

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 43/71 (61%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQL G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQLDGQEAQEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>A3D9J7 DNA-binding protein Fis [Shewanella baltica (strain OS155 
/ ATCC BAA-1091)]
Length=101

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 43/71 (61%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQL G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQLDGQEAQEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>B8E682 DNA-binding protein Fis [Shewanella baltica (strain OS223)]
Length=101

 Score = 94.7 bits (234),  Expect = 3e-30
 Identities = 43/71 (61%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQL G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQLDGQEAQEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>A1SAM2 DNA-binding protein Fis [Shewanella amazonensis (strain 
ATCC BAA-1098 / SB2B)]
Length=101

 Score = 94.4 bits (233),  Expect = 4e-30
 Identities = 43/71 (61%), Positives = 59/71 (83%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQL G++  +VY+MVL E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVSNFFAQLDGQEAQEVYEMVLCEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>O54367 DNA-binding protein Fis [Mannheimia haemolytica]
Length=98

 Score = 94.0 bits (232),  Expect = 5e-30
 Identities = 42/76 (55%), Positives = 63/76 (83%), Gaps = 0/76 (0%)

Query  18  QSDVALRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEIL  77
           Q +  LR +V  A+++Y +QL GE P+++Y++VL+E+E P+L +V++YTRGNQTRAA +L
Sbjct  22  QVNKPLRDNVKAALKNYLSQLNGEDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATML  81

Query  78  GLNRGTLRKKLKAHGL  93
           G+NRGTLRKKLK +G+
Sbjct  82  GINRGTLRKKLKKYGM  97


>Q7VNP1 DNA-binding protein Fis [Haemophilus ducreyi (strain 35000HP 
/ ATCC 700724)]
Length=98

 Score = 94.0 bits (232),  Expect = 5e-30
 Identities = 42/76 (55%), Positives = 63/76 (83%), Gaps = 0/76 (0%)

Query  18  QSDVALRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEIL  77
           Q +  LR +V  A+++Y +QL GE P+++Y++VL+E+E P+L +V++YTRGNQTRAA +L
Sbjct  22  QVNKPLRDNVKAALKNYLSQLNGEDPTELYELVLSEIEHPMLDMVMQYTRGNQTRAATML  81

Query  78  GLNRGTLRKKLKAHGL  93
           G+NRGTLRKKLK +G+
Sbjct  82  GINRGTLRKKLKKYGM  97


>B2K469 DNA-binding protein Fis [Yersinia pseudotuberculosis serotype 
IB (strain PB1/+)]
Length=98

 Score = 94.0 bits (232),  Expect = 5e-30
 Identities = 43/71 (61%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  S +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVSDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>Q1C1P4 DNA-binding protein Fis [Yersinia pestis bv. Antiqua (strain 
Antiqua)]
Length=98

 Score = 94.0 bits (232),  Expect = 5e-30
 Identities = 43/71 (61%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  S +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVSDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>A7FDQ0 DNA-binding protein Fis [Yersinia pseudotuberculosis serotype 
O:1b (strain IP 31758)]
Length=98

 Score = 94.0 bits (232),  Expect = 5e-30
 Identities = 43/71 (61%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  S +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVSDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>A1JRL7 DNA-binding protein Fis [Yersinia enterocolitica serotype 
O:8 / biotype 1B (strain NCTC 13174 / 8081)]
Length=98

 Score = 94.0 bits (232),  Expect = 5e-30
 Identities = 43/71 (61%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  S +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVSDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>O52540 DNA-binding protein Fis [Pectobacterium carotovorum]
Length=98

 Score = 94.0 bits (232),  Expect = 5e-30
 Identities = 43/71 (61%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  S +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVSDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>P44966 DNA-binding protein Fis [Haemophilus influenzae (strain 
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=99

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 45/83 (54%), Positives = 64/83 (77%), Gaps = 3/83 (4%)

Query  14  IFTAQSDVA---LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQ  70
           +  AQS V    LR  V +A+R+Y AQL G+  + +Y++VLAE+E P+L ++++YTRGNQ
Sbjct  16  VLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVEHPMLDMIMQYTRGNQ  75

Query  71  TRAAEILGLNRGTLRKKLKAHGL  93
           TRAA +LG+NRGTLRKKLK +G+
Sbjct  76  TRAANMLGINRGTLRKKLKKYGM  98


>A5UIB9 DNA-binding protein Fis [Haemophilus influenzae (strain 
PittGG)]
Length=99

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 45/83 (54%), Positives = 64/83 (77%), Gaps = 3/83 (4%)

Query  14  IFTAQSDVA---LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQ  70
           +  AQS V    LR  V +A+R+Y AQL G+  + +Y++VLAE+E P+L ++++YTRGNQ
Sbjct  16  VLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVEHPMLDMIMQYTRGNQ  75

Query  71  TRAAEILGLNRGTLRKKLKAHGL  93
           TRAA +LG+NRGTLRKKLK +G+
Sbjct  76  TRAANMLGINRGTLRKKLKKYGM  98


>A5UD91 DNA-binding protein Fis [Haemophilus influenzae (strain 
PittEE)]
Length=99

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 45/83 (54%), Positives = 64/83 (77%), Gaps = 3/83 (4%)

Query  14  IFTAQSDVA---LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQ  70
           +  AQS V    LR  V +A+R+Y AQL G+  + +Y++VLAE+E P+L ++++YTRGNQ
Sbjct  16  VLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVEHPMLDMIMQYTRGNQ  75

Query  71  TRAAEILGLNRGTLRKKLKAHGL  93
           TRAA +LG+NRGTLRKKLK +G+
Sbjct  76  TRAANMLGINRGTLRKKLKKYGM  98


>Q4QLT0 DNA-binding protein Fis [Haemophilus influenzae (strain 
86-028NP)]
Length=99

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 45/83 (54%), Positives = 64/83 (77%), Gaps = 3/83 (4%)

Query  14  IFTAQSDVA---LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQ  70
           +  AQS V    LR  V +A+R+Y AQL G+  + +Y++VLAE+E P+L ++++YTRGNQ
Sbjct  16  VLNAQSQVTSKPLRDSVKQALRNYLAQLDGQDVNDLYELVLAEVEHPMLDMIMQYTRGNQ  75

Query  71  TRAAEILGLNRGTLRKKLKAHGL  93
           TRAA +LG+NRGTLRKKLK +G+
Sbjct  76  TRAANMLGINRGTLRKKLKKYGM  98


>B1KQE6 DNA-binding protein Fis [Shewanella woodyi (strain ATCC 
51908 / MS32)]
Length=101

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 42/71 (59%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQ+ G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQMDGQEAEEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>A8G0V0 DNA-binding protein Fis [Shewanella sediminis (strain 
HAW-EB3)]
Length=101

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 42/71 (59%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQ+ G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQMDGQEAEEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>B8CHY1 DNA-binding protein Fis [Shewanella piezotolerans (strain 
WP3 / JCM 13877)]
Length=101

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 42/71 (59%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQ+ G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQMDGQEAEEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>A8GZI0 DNA-binding protein Fis [Shewanella pealeana (strain ATCC 
700345 / ANG-SQ1)]
Length=101

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 42/71 (59%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQ+ G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQMDGQEAEEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>B0TJ39 DNA-binding protein Fis [Shewanella halifaxensis (strain 
HAW-EB4)]
Length=101

 Score = 94.0 bits (232),  Expect = 6e-30
 Identities = 42/71 (59%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQ+ G++  +VY+MVL+E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQMDGQEAEEVYEMVLSEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>A3Q9Q3 DNA-binding protein Fis [Shewanella loihica (strain ATCC 
BAA-1088 / PV-4)]
Length=101

 Score = 93.6 bits (231),  Expect = 8e-30
 Identities = 42/71 (59%), Positives = 59/71 (83%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V RAV ++FAQ+ G++  +VY+MVL E+E PLL +++++TRGNQTRAA +LG+NRG
Sbjct  30  LRDAVKRAVTNFFAQMDGQEAEEVYEMVLCEVEAPLLDIIMQHTRGNQTRAANMLGINRG  89

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  90  TLRKKLKKYGM  100


>C4LAF3 DNA-binding protein Fis [Tolumonas auensis (strain DSM 
9187 / TA4)]
Length=99

 Score = 93.2 bits (230),  Expect = 1e-29
 Identities = 41/71 (58%), Positives = 60/71 (85%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+R+Y AQL G+  +++YDMVL+E+E P+L ++++YTRGNQTRAA ++G+NRG
Sbjct  28  LRDSVQQALRNYLAQLNGQDVAELYDMVLSEVEAPMLDIIMQYTRGNQTRAAIMMGINRG  87

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  88  TLRKKLKKYGM  98


>P0A6R3 DNA-binding protein Fis [Escherichia coli (strain K12)]
Length=98

 Score = 92.8 bits (229),  Expect = 2e-29
 Identities = 42/71 (59%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>P0A6R9 DNA-binding protein Fis [Serratia marcescens]
Length=98

 Score = 92.8 bits (229),  Expect = 2e-29
 Identities = 42/71 (59%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>P0A6R6 DNA-binding protein Fis [Salmonella typhimurium (strain 
LT2 / SGSC1412 / ATCC 700720)]
Length=98

 Score = 92.8 bits (229),  Expect = 2e-29
 Identities = 42/71 (59%), Positives = 61/71 (86%), Gaps = 0/71 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLKAHGL  93
           TLRKKLK +G+
Sbjct  87  TLRKKLKKYGM  97


>P0CW85 DNA-binding protein Fis [Proteus vulgaris]
Length=93

 Score = 91.3 bits (225),  Expect = 5e-29
 Identities = 41/67 (61%), Positives = 59/67 (88%), Gaps = 0/67 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA+++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAAQMMGINRG  86

Query  83  TLRKKLK  89
           TLRKKLK
Sbjct  87  TLRKKLK  93


>O52537 DNA-binding protein Fis [Klebsiella pneumoniae]
Length=93

 Score = 89.4 bits (220),  Expect = 3e-28
 Identities = 41/67 (61%), Positives = 58/67 (87%), Gaps = 0/67 (0%)

Query  23  LRIHVDRAVRHYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRG  82
           LR  V +A+++YFAQL G+  + +Y++VLAE+E+PLL +V++YTRGNQTRAA ++G+NRG
Sbjct  27  LRDSVKQALKNYFAQLNGQDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRG  86

Query  83  TLRKKLK  89
           TLRKKLK
Sbjct  87  TLRKKLK  93


>P10577 DNA-binding transcriptional regulator NtrC [Rhizobium 
meliloti (strain 1021)]
Length=484

 Score = 68.6 bits (166),  Expect = 2e-18
 Identities = 36/68 (53%), Positives = 46/68 (68%), Gaps = 1/68 (1%)

Query  27   VDRAVRHYFAQL-QGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRGTLR  85
            V+  +R YFA       PS +YD VLAEME PL+   L  TRGNQ +AA++LGLNR TLR
Sbjct  408  VEENMRQYFASFGDALPPSGLYDRVLAEMEYPLILAALTATRGNQIKAADLLGLNRNTLR  467

Query  86   KKLKAHGL  93
            KK++  G+
Sbjct  468  KKIRELGV  475


>P45671 DNA-binding transcriptional regulator NtrC [Azospirillum 
brasilense]
Length=481

 Score = 68.2 bits (165),  Expect = 3e-18
 Identities = 34/64 (53%), Positives = 48/64 (75%), Gaps = 1/64 (2%)

Query  27   VDRAVRHYFAQLQGEQPSQ-VYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRGTLR  85
            V+R ++ YFA  +   PS  +YD VL E+E+PL+S+ L  TRGNQ +AA++LGLNR TLR
Sbjct  407  VERHLKDYFAAHKDGMPSNGLYDRVLREVERPLISLSLSATRGNQIKAAQLLGLNRNTLR  466

Query  86   KKLK  89
            KK++
Sbjct  467  KKIR  470


>Q04848 DNA-binding transcriptional regulator NtrC [Azorhizobium 
caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 
6465 / NBRC 14845 / NCIMB 13405 / ORS 571)]
Length=480

 Score = 62.4 bits (150),  Expect = 4e-16
 Identities = 35/72 (49%), Positives = 46/72 (64%), Gaps = 3/72 (4%)

Query  20   DVALRIHVDRAVRHYFAQLQGEQ--PSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEIL  77
            D  L   V+R +  YF+   GE   P  +Y  +L ++E PLLS  L  TRGNQ +AAE+L
Sbjct  399  DATLGASVERHLNGYFSGF-GEDLPPPGLYHRILRDVEYPLLSAALAATRGNQIKAAELL  457

Query  78   GLNRGTLRKKLK  89
            GLNR TLRKK++
Sbjct  458  GLNRNTLRKKIR  469


>P09432 DNA-binding transcriptional regulator NtrC [Rhodobacter 
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)]
Length=458

 Score = 62.0 bits (149),  Expect = 5e-16
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query  23   LRIHVDRAVRHYFAQLQGEQPSQ-VYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNR  81
            L   + R +R YF    G  P   +YD +LAEME PL+ + L+ T GNQ + A++LG+NR
Sbjct  378  LSASIARHLRRYFDLHGGNLPPPGLYDRILAEMEAPLIEIALDATGGNQAKCADLLGINR  437

Query  82   GTLRKKL  88
             TLRKK+
Sbjct  438  NTLRKKI  444


>P10576 DNA-binding transcriptional regulator NtrC [Bradyrhizobium 
sp. (strain RP501 Parasponia)]
Length=480

 Score = 59.7 bits (143),  Expect = 3e-15
 Identities = 29/57 (51%), Positives = 38/57 (67%), Gaps = 0/57 (0%)

Query  33   HYFAQLQGEQPSQVYDMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRGTLRKKLK  89
            H+     G  P  +Y  +L E+E PLL+  L  TRGNQ RAA++LGLNR TLRKK++
Sbjct  413  HFSGFPNGVPPPGLYHRILKEIEIPLLTAALAATRGNQIRAADLLGLNRNTLRKKIR  469


>P17899 Transcriptional regulatory protein FlbD [Caulobacter vibrioides 
(strain ATCC 19089 / CB15)]
Length=455

 Score = 41.6 bits (96),  Expect = 7e-09
 Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (2%)

Query  36   AQLQGEQPSQVY-DMVLAEMEKPLLSVVLEYTRGNQTRAAEILGLNRGTLRKKLKAH  91
            AQ+  +  S+ +    +AE+E+ L+   LE+  GN+T AA ILG++  TLR KLK +
Sbjct  381  AQMAADAASRAFVGSTVAEVEQQLIIDTLEHCLGNRTHAANILGISIRTLRNKLKEY  437



Lambda      K        H        a         alpha
   0.327    0.139    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 286822


  Database: 66f21aed6b1b486e083fad20f15a84d0.SwissProt.fasta
    Posted date:  May 20, 2024  11:44 AM
  Number of letters in database: 6,106
  Number of sequences in database:  39



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40