BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 45c4010f76950a17adafda28e71b6566.SwissProt.fasta
           1 sequences; 327 total letters



Query= ACIAD2481

Length=295
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q02MM0 CRISPR-associated protein Csy2 [Pseudomonas aeruginosa (st...  48.9    3e-11


>Q02MM0 CRISPR-associated protein Csy2 [Pseudomonas aeruginosa 
(strain UCBPP-PA14)]
Length=327

 Score = 48.9 bits (115),  Expect = 3e-11
 Identities = 73/322 (23%), Positives = 119/322 (37%), Gaps = 67/322 (21%)

Query  6    VIPRIRVQNANMQSNGLLLGGVPLFAANMFAHHLARQLGTT----DEGIIYIHHNQQRLG  61
            ++PR+ +QNAN  S+ L  G     A   F H L R++G +     +G+  + H  +   
Sbjct  11   LLPRLSIQNANAISSPLTWGFPSPGAFTGFVHALQRRVGISLDIELDGVGIVCHRFEAQI  70

Query  62   GQAYGRFTPAQRRGAVFIGKKDYSSKNKYALSLQPTASCHLEFSLVIKFSSSRISPEKLT  121
             Q      PA +R  VF   ++  +++    ++      HLE SL++      +      
Sbjct  71   SQ------PAGKRTKVFNLTRNPLNRDGSTAAIVEEGRAHLEVSLLLGVHGDGLDDHPAQ  124

Query  122  HILKR-------SRFAGGQIIEFLEITTHAEN---------------ELEAALKKIKTGF  159
             I ++        R AGG I+ +      A N                     +++  GF
Sbjct  125  EIARQVQEQAGAMRLAGGSILPWCNERFPAPNAELLMLGGSDEQRRKNQRRLTRRLLPGF  184

Query  160  AILDRQDLLIEYQQRQQINRVQAFTQLLALKVDTLRAFFNDQNLS---------------  204
            A++ R+ LL ++ +  +    +A T  L   +D  R  F     S               
Sbjct  185  ALVSREALLQQHLETLRTTLPEATT--LDALLDLCRINFEPPATSSEEEASPPDAAWQVR  242

Query  205  ----WISATNLGYALLEPLTDQRAGIRQAQDQETTAHAYAEPLTGIVQYFSLGEILRKNT  260
                W+     GY  L PL      +R A+D+ET       PL  +   F LGE L  + 
Sbjct  243  DKPGWLVPIPAGYNALSPLY-LPGEVRNARDRET-------PLRFVENLFGLGEWLSPHR  294

Query  261  EVEDDSWHNLQKLLWTYHWSQD  282
                     L  LLW +H   D
Sbjct  295  VAA------LSDLLWYHHAEPD  310


 Score = 14.6 bits (26),  Expect = 3.3
 Identities = 8/26 (31%), Positives = 13/26 (50%), Gaps = 0/26 (0%)

Query  219  LTDQRAGIRQAQDQETTAHAYAEPLT  244
            +TD  A +   +     A+A + PLT
Sbjct  3    VTDPEALLLLPRLSIQNANAISSPLT  28



Lambda      K        H        a         alpha
   0.323    0.136    0.402    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80400


  Database: 45c4010f76950a17adafda28e71b6566.SwissProt.fasta
    Posted date:  May 9, 2024  1:26 PM
  Number of letters in database: 327
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40