BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 3831779e3c32c9b95e30f6ec391d29fe.SwissProt.fasta
           2 sequences; 679 total letters



Query= ACIAD2482

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6D0W6 CRISPR-associated protein Csy3 [Pectobacterium atrosepticu...  130     3e-39
Q02MM1 CRISPR-associated protein Csy3 [Pseudomonas aeruginosa (st...  123     1e-36


>Q6D0W6 CRISPR-associated protein Csy3 [Pectobacterium atrosepticum 
(strain SCRI 1043 / ATCC BAA-672)]
Length=337

 Score = 130 bits (327),  Expect = 3e-39
 Identities = 108/356 (30%), Positives = 170/356 (48%), Gaps = 40/356 (11%)

Query  6    KLPGSLSLQRGTVVSDGAFF--NLFEDGKQEPLHVMYHGIRGTQNVAGNKEKGAATGN--  61
            K    L+ +R    SD   +  N  +      + +    +RGT     N+ K A T +  
Sbjct  9    KTASVLAFERKLANSDALMYAGNWAQQDNWTAIAIQEKSVRGT---ISNRLKNALTSDPA  65

Query  62   SLAREV--TNIQLTESAKLQPNAKLLVKWDFRFIDLSYVLFASASKAGADKTEEYNFRQA  119
             L  E+   N+Q  + A L   A  L         + + L    + A      + +++ A
Sbjct  66   KLDAEIQKANLQKVDVAALPFGADTL--------KIVFTLRVLGNLAQPSVCNDQDYQTA  117

Query  120  FLNFVNRAKESDGLKEVVRRYVRNIVNGRWLWRNRIVAESITIQVTAQDYPETFSFDALS  179
              + +    +  G   +  RY  NI NGR+LWRNR+ AE+I + VT +    ++ F+   
Sbjct  118  LGDIITGYAQEQGFSTLAARYAENIANGRFLWRNRVGAEAIRVVVTKKG-ERSWEFNGED  176

Query  180  YNLKSFAEPSEQEQKLAGILLKGITGESTNAALHIEAIVDFGMGGVEVFPSQNYLEDKP-  238
            Y+L+ F++P+     L   + KG+ G++ +A   +EA V  G  G EVFPSQ  + D+  
Sbjct  177  YSLRQFSQPAGDLAALTQAIEKGLAGDA-SALFTVEAYVQLG-NGQEVFPSQELVLDEKA  234

Query  239  -KGFSRSLYQLTPKKPDHKANDNQYLGQAALRDQKIGNALRTIDTWYPSFKENDEKPIAI  297
              G S+ LYQ+         ND      AA+  QKIGNALRTID WYP+   ++  PIA+
Sbjct  235  RNGKSKILYQV---------ND-----VAAIHSQKIGNALRTIDDWYPA--ADEAGPIAV  278

Query  298  EPNGANLEGQIFYRVGKDKVSAFDILKE--IDELDPSSEKGMFLISCLIRGGVYSE  351
            EP G+       YR  ++K+  + +L    I    P  E+  ++I+ LIRGGV+ E
Sbjct  279  EPYGSVTSRGKAYRQPREKMDFYTLLDNWVIKGDVPMPEQQHYVIATLIRGGVFGE  334


>Q02MM1 CRISPR-associated protein Csy3 [Pseudomonas aeruginosa 
(strain UCBPP-PA14)]
Length=342

 Score = 123 bits (309),  Expect = 1e-36
 Identities = 109/336 (32%), Positives = 164/336 (49%), Gaps = 41/336 (12%)

Query  30   DGKQE--PLHVMYHGIRGT-QNVAGNKEKGAATGNSLAREVTNIQLTESAKLQPNAKLL-  85
            D  QE   + V    +RGT  N    K++  A  ++  +   N+Q  + A L  +A  L 
Sbjct  34   DASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQS-PNLQTVDVANLPSDADTLK  92

Query  86   VKWDFRFIDLSYVLFASASKAGADKTEEYNFRQAFLNFVNRAKESDGLKEVVRRYVRNIV  145
            V++  R +  +    A    A  DK       Q    +VN      G  E+ RRY  N+ 
Sbjct  93   VRFTLRVLGGAGTPSACNDAAYRDK-----LLQTVATYVN----DQGFAELARRYAHNLA  143

Query  146  NGRWLWRNRIVAESITIQVT---AQDYPETFSFDALSYNLKSFAEPSEQEQKLAGILLKG  202
            N R+LWRNR+ AE++ +++      +    + FDAL+  L+ F   +E +  LA ++  G
Sbjct  144  NARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELD-ALAELIASG  202

Query  203  ITGESTNAALHIEAIVDFGMGGVEVFPSQNYLEDK--PKG-FSRSLYQLTPKKPDHKAND  259
            ++G S +  L + A    G  G EVFPSQ  + DK   KG  S++LY +           
Sbjct  203  LSG-SGHVLLEVVAFARIG-DGQEVFPSQELILDKGDKKGQKSKTLYSVR----------  250

Query  260  NQYLGQAALRDQKIGNALRTIDTWYPSFKENDEKPIAIEPNGANLEGQIFYRVGKDKVSA  319
                  AA+  QKIGNALRTIDTWYP   E+   PIA+EP G+       YR  K K+  
Sbjct  251  ----DAAAIHSQKIGNALRTIDTWYPD--EDGLGPIAVEPYGSVTSQGKAYRQPKQKLDF  304

Query  320  FDILKE--IDELDPSSEKGMFLISCLIRGGVYSEGE  353
            + +L    + +  P+ E+  ++I+ LIRGGV+ E E
Sbjct  305  YTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAE  340



Lambda      K        H        a         alpha
   0.318    0.136    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 196773


  Database: 3831779e3c32c9b95e30f6ec391d29fe.SwissProt.fasta
    Posted date:  May 30, 2024  9:43 PM
  Number of letters in database: 679
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40