BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 22a2411eee46bc2ba5c04d2b0eac6c06.SwissProt.fasta
15 sequences; 13,983 total letters
Query= ACIAD2501
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
P54302 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi] 182 4e-50
Q9KLK7 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio chole... 181 9e-50
Q87GU5 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parah... 181 1e-49
Q7MD16 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulni... 175 8e-48
Q8D5Z6 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulni... 175 1e-47
P0C0F6 Sensory/regulatory protein RpfC [Xanthomonas campestris pv... 162 5e-44
P0C0F7 Sensory/regulatory protein RpfC [Xanthomonas campestris pv... 162 7e-44
P0AEC4 Aerobic respiration control sensor protein ArcB [Shigella ... 161 1e-43
P58363 Aerobic respiration control sensor protein ArcB [Escherich... 161 1e-43
P0AEC3 Aerobic respiration control sensor protein ArcB [Escherich... 161 1e-43
P40330 Virulence sensor protein BvgS [Bordetella parapertussis (s... 160 8e-43
P26762 Virulence sensor protein BvgS [Bordetella bronchiseptica (... 160 1e-42
P16575 Virulence sensor protein BvgS [Bordetella pertussis (strai... 160 1e-42
Q9HUI3 Sensor histidine kinase AruS [Pseudomonas aeruginosa (stra... 155 4e-41
P30855 Sensor protein EvgS [Escherichia coli (strain K12)] 155 5e-41
>P54302 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio harveyi]
Length=859
Score = 182 bits (463), Expect = 4e-50
Identities = 118/373 (32%), Positives = 194/373 (52%), Gaps = 8/373 (2%)
Query 670 ARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQH 729
AR AE++ +A++ ++ +SHE+RTP+N ILG +QLL+ Q + + V+ SG+H
Sbjct 472 ARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVDTQEQ-KNQIDVLCHSGEH 530
Query 730 LTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQ 789
L ++++ +LD S+IE GK ++ F + + + +++P KG++ + +
Sbjct 531 LLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKGVELVIENELDPNV 590
Query 790 YVRTDQKRLEQILINLLGNALKFTNKGSIYFKV------GYRFQTAYFEINDTGCGIAHH 843
+ TDQ RL QIL NL+ NA+KFT GSI G E+ DTG GI
Sbjct 591 EIFTDQVRLNQILFNLVSNAVKFTPIGSIRLHAELEQFYGAENSVLVVELTDTGIGIESD 650
Query 844 DLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLP 903
L+++F PF + + + G+GLGL IVK LVD+L G + V S G+ F I L +
Sbjct 651 KLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGGGTTFVITLPVK 710
Query 904 SK-AVVHPITNVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIEC 962
+ V+ P+ Q + E ++L+V++ + ++ F + + A+ G++
Sbjct 711 DRERVLRPLEVSQRIKPEALFDESLKVLLVEDNHTNAFILQAFCKKYKMQVDWAKDGLDA 770
Query 963 LRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNITNVPILIISANVNEREGNPQDAVLS 1022
+ + DLILMD +P +GG ET H +RQN PI +A+ + + A +
Sbjct 771 MELLSDTTYDLILMDNQLPHLGGIETTHEIRQNLRLGTPIYACTADTAKETSDAFMAAGA 830
Query 1023 EDFMLKPIDLNLL 1035
MLKPI N L
Sbjct 831 NYVMLKPIKENAL 843
>Q9KLK7 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=857
Score = 181 bits (460), Expect = 9e-50
Identities = 113/369 (31%), Positives = 198/369 (54%), Gaps = 12/369 (3%)
Query 656 EIAAHEQTSQHLQDARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQ 715
+I + + Q AR AE + ++ ++ +SHELRTPLN +LG SQLL K+ L+ +
Sbjct 455 DITTIAEAEKQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLL-KRTPLNDE 513
Query 716 GQTALGVISRSGQHLTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQK 775
+ + V+ SG+HL ++++ +LD SR+E GK + + + + ++++P +K
Sbjct 514 QREHVAVLCSSGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEK 573
Query 776 GLKFICDVSEHLPQYVRTDQKRLEQILINLLGNALKFTNKGSIYFKV----GYRFQTAYF 831
GL+ + + + VR+DQ R+ QIL NLL NA+KFT++GSI ++ G
Sbjct 574 GLELVVNSNITTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVI 633
Query 832 EINDTGCGIAHHDLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELN 891
++ DTG GI DL IF PF + + + G+GLGL IV LV++L GQL V+SE
Sbjct 634 QVVDTGIGIREQDLTVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYG 693
Query 892 QGSQFKIKLYLPSKAVVHPITNVQ---SNQITGYKGEQKRILVVDNEAVDRGLVANFLRP 948
G++F+I+ LP + V P Q + + R+L+V++ + + F R
Sbjct 694 IGTRFEIQ--LPIELVEKPDAPQQLLPAPDPQPLFDKTLRVLLVEDNHTNAFIAQAFCRK 751
Query 949 LGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNITNVPILIISAN 1008
G + G++ + ++ DL+LMD +P + G ET +++ + ++P+++ +
Sbjct 752 YGLDVSWVTDGLQAIEELKIHDYDLVLMDNQLPYLDGVETTRTIKK--VLHLPVVVYACT 809
Query 1009 VNEREGNPQ 1017
+ E Q
Sbjct 810 ADGLEETRQ 818
>Q87GU5 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633)]
Length=858
Score = 181 bits (459), Expect = 1e-49
Identities = 116/373 (31%), Positives = 194/373 (52%), Gaps = 8/373 (2%)
Query 670 ARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQH 729
AR AE++ +A++ ++ +SHE+RTP+N ILG +QLL+ + Q + + V+ SG+H
Sbjct 471 ARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVEAEEQ-KNQIDVLRHSGEH 529
Query 730 LTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQ 789
L ++++ +LD S+IE GK ++ F + + + +++P E KG++ + +
Sbjct 530 LLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQLDGNV 589
Query 790 YVRTDQKRLEQILINLLGNALKFTNKGSIYFKV------GYRFQTAYFEINDTGCGIAHH 843
+ TDQ RL QIL NL+ NA+KFT G + G EI+DTG GI
Sbjct 590 EIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVLVVEISDTGIGIESD 649
Query 844 DLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLP 903
L+ +F PF + + G+GLGL IVK LVD+L G + V S+ QG+ F + L +
Sbjct 650 KLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVTLPVK 709
Query 904 SK-AVVHPITNVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIEC 962
+ V+ P+ + Q + E ++L+V++ + ++ F + A+ G+E
Sbjct 710 DRERVLAPLDSSQRVKPAELFDESLKVLLVEDNHTNAFILKAFCTKYKMQVDWAKDGLEA 769
Query 963 LRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNITNVPILIISANVNEREGNPQDAVLS 1022
+ + DLILMD +P +GG ET +RQN PI +A+ + + +
Sbjct 770 MEFLKDHSYDLILMDNQLPHLGGIETTKEIRQNLKLGTPIYACTADTAQETSDAFMEAGA 829
Query 1023 EDFMLKPIDLNLL 1035
+LKPI N L
Sbjct 830 NYVLLKPIKENAL 842
>Q7MD16 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
(strain YJ016)]
Length=857
Score = 175 bits (444), Expect = 8e-48
Identities = 113/369 (31%), Positives = 199/369 (54%), Gaps = 12/369 (3%)
Query 670 ARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQH 729
AR AE++ + ++ ++ +SHE+RTPLN ILG +QLL++ A+ + V+ SG+H
Sbjct 473 ARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVN-DAENLKQVDVLCNSGEH 531
Query 730 LTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQ 789
L ++++ +LD S+IE GK ++ D +F + + + +++P +KG+ F L
Sbjct 532 LLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPLDC 591
Query 790 YVRTDQKRLEQILINLLGNALKFTNKG--SIYFKVGYRFQTAY----FEINDTGCGIAHH 843
+ TDQ RL QI+ NL+ NA+KFT G + FK+ ++ + +++DTG GI
Sbjct 592 QLHTDQVRLNQIMFNLISNAVKFTPAGRIEVSFKLEQFARSEHSILSIQVSDTGIGIDES 651
Query 844 DLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLP 903
LE IF PF + ++ + G+GLGL IVK LV++L G+++V SEL +GS F + + +
Sbjct 652 KLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIPVE 711
Query 904 SKAVVH--PITNVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIE 961
TN + Q+ G+ ++L+V++ + ++ F + ++ + G +
Sbjct 712 KGECEEQKTPTNPKPEQLF---GQGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDGTQ 768
Query 962 CLRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNITNVPILIISANVNEREGNPQDAVL 1021
L ++ DLILMD +P MGG E +R+ PI +A+ E +
Sbjct 769 ALEKLKEHAFDLILMDNQLPKMGGIEATREIRETLKLGTPIYACTADAQESTKQEFLSAG 828
Query 1022 SEDFMLKPI 1030
+ ++KPI
Sbjct 829 ANRVIVKPI 837
>Q8D5Z6 Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio vulnificus
(strain CMCP6)]
Length=857
Score = 175 bits (443), Expect = 1e-47
Identities = 113/371 (30%), Positives = 198/371 (53%), Gaps = 16/371 (4%)
Query 670 ARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQH 729
AR AE++ + ++ ++ +SHE+RTPLN ILG +QLL++ A+ + V+ SG+H
Sbjct 473 ARREAEQSAKTRADFLAKMSHEIRTPLNGILGIAQLLKRSVN-DAENLKQVDVLCNSGEH 531
Query 730 LTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQ 789
L ++++ +LD S+IE GK ++ D +F + + + +++P +KG+ F L
Sbjct 532 LLAVLNDILDFSKIEQGKFNIKKRDFNFYDTLNTLENIYRPICREKGVSFEIHNQIPLDC 591
Query 790 YVRTDQKRLEQILINLLGNALKFTNKGSIYFKVGYRFQ--------TAYFEINDTGCGIA 841
+ TDQ RL QI+ NL+ NA+KFT G I +V ++ + +++DTG GI
Sbjct 592 QLHTDQVRLNQIMFNLISNAVKFTPAGRI--EVSFKLEKFARSEHSILSIQVSDTGIGID 649
Query 842 HHDLERIFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLY 901
LE IF PF + ++ + G+GLGL IVK LV++L G+++V SEL +GS F + +
Sbjct 650 ESKLESIFEPFVQADSLSTREYGGSGLGLTIVKNLVEMLEGEISVQSELCKGSTFYLSIP 709
Query 902 LPSKAVVH--PITNVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESG 959
+ TN + Q+ G+ ++L+V++ + ++ F + ++ + G
Sbjct 710 VEKGECEEQKTPTNPKPEQLF---GQGLKVLLVEDNHTNAFILKAFCQKYQMSVEWVQDG 766
Query 960 IECLRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNITNVPILIISANVNEREGNPQDA 1019
+ L ++ DLILMD +P MGG E +R+ PI +A+ E +
Sbjct 767 TQALEKLKEHAFDLILMDNQLPKMGGIEATREIRETLKLGTPIYACTADAQESTKQEFLS 826
Query 1020 VLSEDFMLKPI 1030
+ ++KPI
Sbjct 827 AGANRVIVKPI 837
>P0C0F6 Sensory/regulatory protein RpfC [Xanthomonas campestris
pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 /
LMG 568 / P 25)]
Length=726
Score = 162 bits (410), Expect = 5e-44
Identities = 111/399 (28%), Positives = 191/399 (48%), Gaps = 32/399 (8%)
Query 674 AERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSL 733
A AN+AKSR++ +SHE RTPLN + G +++L +L A+ + L I S + L SL
Sbjct 182 ARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATT-RLDAEQKECLNTIQASARSLLSL 240
Query 734 IDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRT 793
++ +LD+S IE GKI ++ D I + + +PQ+ + L++ V++ +P ++
Sbjct 241 VEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQVADDVPDLLKG 300
Query 794 DQKRLEQILINLLGNALKFTNKGSIYFKVGYRFQTA------YFEINDTGCGIAHHDLER 847
D L Q+L+NL+GNA+KFT G + +V +A F++ DTG G+ R
Sbjct 301 DTAHLRQVLLNLVGNAVKFTEHGHVLLRVTRVSGSAEDAVRLRFDVEDTGIGVPMDMRPR 360
Query 848 IFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKL------- 900
+F FE+ + + GTGLG I K LV+ +GG + GS F +L
Sbjct 361 LFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFKENQPSGSVFWFELPMAIGEP 420
Query 901 ------YLPSKAVVHPITNVQSNQITGYKG---------EQKRILVVDNEAVDRGLVANF 945
+P+ A+V ++S+ I + R+LV D+ +R ++
Sbjct 421 LKSSTVRVPTGALVDAPEELESSNIIAFSNPFLRHRARVRSMRMLVADDHEANRMVLQRL 480
Query 946 LRPLGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWETAHLLR---QNNITNVPI 1002
L G + + L + D +++DL+MP M G + LR + + P+
Sbjct 481 LEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPV 540
Query 1003 LIISANVNEREGNPQDAVLSEDFMLKPIDLNLLLSKIGD 1041
+++SA+V + + F+ KP+ LL + D
Sbjct 541 VVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLAD 579
>P0C0F7 Sensory/regulatory protein RpfC [Xanthomonas campestris
pv. campestris (strain 8004)]
Length=726
Score = 162 bits (409), Expect = 7e-44
Identities = 111/399 (28%), Positives = 191/399 (48%), Gaps = 32/399 (8%)
Query 674 AERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSL 733
A AN+AKSR++ +SHE RTPLN + G +++L +L A+ + L I S + L SL
Sbjct 182 ARHANQAKSRFLANMSHEFRTPLNGLSGMTEVLATT-RLDAEQKECLNTIQASARSLLSL 240
Query 734 IDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRT 793
++ +LD+S IE GKI ++ D I + + +PQ+ + L++ V++ +P ++
Sbjct 241 VEEVLDISAIEAGKIRIDRRDFSLREMIGSVNLILQPQARGRRLEYGTQVADDVPDLLKG 300
Query 794 DQKRLEQILINLLGNALKFTNKGSIYFKVGYRFQTA------YFEINDTGCGIAHHDLER 847
D L Q+L+NL+GNA+KFT G + +V +A F++ DTG G+ R
Sbjct 301 DTAHLRQVLLNLVGNAVKFTEHGHVLLRVTRVSGSAEDAVRLRFDVEDTGIGVPMDMRPR 360
Query 848 IFNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKL------- 900
+F FE+ + + GTGLG I K LV+ +GG + GS F +L
Sbjct 361 LFEAFEQADVGLSRRYEGTGLGTTIAKGLVEAMGGSIGFKENQPSGSVFWFELPMAIGEP 420
Query 901 ------YLPSKAVVHPITNVQSNQITGYKG---------EQKRILVVDNEAVDRGLVANF 945
+P+ A+V ++S+ I + R+LV D+ +R ++
Sbjct 421 LKSSTVRVPTGALVDAPEELESSNIIAFSNPFLRHRARVRSMRMLVADDHEANRMVLQRL 480
Query 946 LRPLGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWETAHLLR---QNNITNVPI 1002
L G + + L + D +++DL+MP M G + LR + + P+
Sbjct 481 LEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPV 540
Query 1003 LIISANVNEREGNPQDAVLSEDFMLKPIDLNLLLSKIGD 1041
+++SA+V + + F+ KP+ LL + D
Sbjct 541 VVLSADVTPEAIRACEQAGARAFLAKPVLAAKLLDTLAD 579
>P0AEC4 Aerobic respiration control sensor protein ArcB [Shigella
flexneri]
Length=778
Score = 161 bits (408), Expect = 1e-43
Identities = 114/369 (31%), Positives = 198/369 (54%), Gaps = 10/369 (3%)
Query 675 ERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSLI 734
ERA+ K+ ++ ISHELRTPLN I+G S++L E L+A+ + L I S L ++
Sbjct 277 ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQEKYLKTIHVSAVTLGNIF 335
Query 735 DGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRTD 794
+ ++D+ ++E K+ L+ V F +F+ + + Q++QKGL+F + + LP V TD
Sbjct 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITD 395
Query 795 QKRLEQILINLLGNALKFTNKGSIYFKVGY-RFQTAYFEINDTGCGIAHHDLERIFNPFE 853
RL QIL NL+ NA+KFT +G + +V Y +FE+ D+G GI +L++IF +
Sbjct 396 GTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYY 455
Query 854 RGSNVVQG-GFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLPSKAVVHPIT 912
+ + G TGTG+GL + + L +GG +TV SE +GS F + ++ PS V +
Sbjct 456 QVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS--VAEEVD 513
Query 913 NVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIECLRQVPAFQPD 972
+ +L+V++ ++ + + L LG + A +G L + D
Sbjct 514 DAFDEDDMPLPA--LNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYD 571
Query 973 LILMDLNMPMMGGWETAHLL--RQNNITNVPILIISANVNEREGNPQDAVLSEDFMLKPI 1030
L+L+D+ +P M G + + L R P++ ++ANV + + +A + +D + KP+
Sbjct 572 LVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGM-DDVLSKPL 630
Query 1031 DLNLLLSKI 1039
+ L + I
Sbjct 631 SVPALTAMI 639
Score = 21.6 bits (44), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 0/30 (0%)
Query 639 RRKAEQETQQQTSLLIDEIAAHEQTSQHLQ 668
R KAE E Q+ L EI E+T L+
Sbjct 122 REKAEAELQETFGQLKIEIKEREETQIQLE 151
>P58363 Aerobic respiration control sensor protein ArcB [Escherichia
coli O157:H7]
Length=778
Score = 161 bits (408), Expect = 1e-43
Identities = 114/369 (31%), Positives = 198/369 (54%), Gaps = 10/369 (3%)
Query 675 ERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSLI 734
ERA+ K+ ++ ISHELRTPLN I+G S++L E L+A+ + L I S L ++
Sbjct 277 ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQEKYLKTIHVSAVTLGNIF 335
Query 735 DGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRTD 794
+ ++D+ ++E K+ L+ V F +F+ + + Q++QKGL+F + + LP V TD
Sbjct 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITD 395
Query 795 QKRLEQILINLLGNALKFTNKGSIYFKVGY-RFQTAYFEINDTGCGIAHHDLERIFNPFE 853
RL QIL NL+ NA+KFT +G + +V Y +FE+ D+G GI +L++IF +
Sbjct 396 GTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYY 455
Query 854 RGSNVVQG-GFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLPSKAVVHPIT 912
+ + G TGTG+GL + + L +GG +TV SE +GS F + ++ PS V +
Sbjct 456 QVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS--VAEEVD 513
Query 913 NVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIECLRQVPAFQPD 972
+ +L+V++ ++ + + L LG + A +G L + D
Sbjct 514 DAFDEDDMPLPA--LNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYD 571
Query 973 LILMDLNMPMMGGWETAHLL--RQNNITNVPILIISANVNEREGNPQDAVLSEDFMLKPI 1030
L+L+D+ +P M G + + L R P++ ++ANV + + +A + +D + KP+
Sbjct 572 LVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGM-DDVLSKPL 630
Query 1031 DLNLLLSKI 1039
+ L + I
Sbjct 631 SVPALTAMI 639
Score = 21.6 bits (44), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 0/30 (0%)
Query 639 RRKAEQETQQQTSLLIDEIAAHEQTSQHLQ 668
R KAE E Q+ L EI E+T L+
Sbjct 122 REKAEAELQETFGQLKIEIKEREETQIQLE 151
>P0AEC3 Aerobic respiration control sensor protein ArcB [Escherichia
coli (strain K12)]
Length=778
Score = 161 bits (408), Expect = 1e-43
Identities = 114/369 (31%), Positives = 198/369 (54%), Gaps = 10/369 (3%)
Query 675 ERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSLI 734
ERA+ K+ ++ ISHELRTPLN I+G S++L E L+A+ + L I S L ++
Sbjct 277 ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTE-LTAEQEKYLKTIHVSAVTLGNIF 335
Query 735 DGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRTD 794
+ ++D+ ++E K+ L+ V F +F+ + + Q++QKGL+F + + LP V TD
Sbjct 336 NDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITD 395
Query 795 QKRLEQILINLLGNALKFTNKGSIYFKVGY-RFQTAYFEINDTGCGIAHHDLERIFNPFE 853
RL QIL NL+ NA+KFT +G + +V Y +FE+ D+G GI +L++IF +
Sbjct 396 GTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYY 455
Query 854 RGSNVVQG-GFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLPSKAVVHPIT 912
+ + G TGTG+GL + + L +GG +TV SE +GS F + ++ PS V +
Sbjct 456 QVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPS--VAEEVD 513
Query 913 NVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIECLRQVPAFQPD 972
+ +L+V++ ++ + + L LG + A +G L + D
Sbjct 514 DAFDEDDMPLPA--LNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFKPGEYD 571
Query 973 LILMDLNMPMMGGWETAHLL--RQNNITNVPILIISANVNEREGNPQDAVLSEDFMLKPI 1030
L+L+D+ +P M G + + L R P++ ++ANV + + +A + +D + KP+
Sbjct 572 LVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGM-DDVLSKPL 630
Query 1031 DLNLLLSKI 1039
+ L + I
Sbjct 631 SVPALTAMI 639
Score = 21.6 bits (44), Expect = 4.6
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 0/30 (0%)
Query 639 RRKAEQETQQQTSLLIDEIAAHEQTSQHLQ 668
R KAE E Q+ L EI E+T L+
Sbjct 122 REKAEAELQETFGQLKIEIKEREETQIQLE 151
>P40330 Virulence sensor protein BvgS [Bordetella parapertussis
(strain 12822 / ATCC BAA-587 / NCTC 13253)]
Length=1238
Score = 160 bits (406), Expect = 8e-43
Identities = 118/399 (30%), Positives = 192/399 (48%), Gaps = 13/399 (3%)
Query 656 EIAAHEQTSQHLQDARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQ 715
+I + + L DA+ A+ AN AK+ ++ +SHE+RTP+N+I+G +L +
Sbjct 695 DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEP 754
Query 716 GQTALGVISRSGQHLTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQK 775
+ ++ V S + L LI +LD+++IE GK L V E I++F + QK
Sbjct 755 DRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRLFDGLARQK 814
Query 776 GLKFICDVSEHLPQYVRTDQKRLEQILINLLGNALKFTNKGSIYFKVGYR----FQTAYF 831
G++ + V D R++Q+L NL+GNA+KFT +G + V R F
Sbjct 815 GIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAHVQF 874
Query 832 EINDTGCGIAHHDLERIFNPFER-GSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSEL 890
++DTGCGI+ D ++F PF + G + G GTGLGL I + LV+L+GG L + S
Sbjct 875 SVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAP 934
Query 891 NQGSQFKIKLYLPS-KAVVHPITNVQSNQITGYKGE-QKRILVVDNEAVDRGLVANFLRP 948
G+ + L L + + Q T K + R+LVVD+ + L+ L
Sbjct 935 GVGTTVSVDLRLTMIEKSAQATPPAAAAQATPSKPQVSLRVLVVDDHKPNLMLLRQQLDY 994
Query 949 LGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNI------TNVPI 1002
LG + A+SG L D+++ D NMP + G+E A +R T +
Sbjct 995 LGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYGRTRCIL 1054
Query 1003 LIISANVNEREGNPQDAVLSEDFMLKPIDLNLLLSKIGD 1041
+A+ E A +D + KPI ++ L ++ +
Sbjct 1055 FGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093
>P26762 Virulence sensor protein BvgS [Bordetella bronchiseptica
(strain ATCC BAA-588 / NCTC 13252 / RB50)]
Length=1238
Score = 160 bits (405), Expect = 1e-42
Identities = 118/399 (30%), Positives = 192/399 (48%), Gaps = 13/399 (3%)
Query 656 EIAAHEQTSQHLQDARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQ 715
+I + + L DA+ A+ AN AK+ ++ +SHE+RTP+N+I+G +L +
Sbjct 695 DITERAELLRELHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPADQEP 754
Query 716 GQTALGVISRSGQHLTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQK 775
+ ++ V S + L LI +LD+++IE GK L V E I++F + QK
Sbjct 755 DRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRALPEGAIRVFDGLARQK 814
Query 776 GLKFICDVSEHLPQYVRTDQKRLEQILINLLGNALKFTNKGSIYFKVGYR----FQTAYF 831
G++ + V D R++Q+L NL+GNA+KFT +G + V R F
Sbjct 815 GIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLTVTARPDGEAAHVQF 874
Query 832 EINDTGCGIAHHDLERIFNPFER-GSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSEL 890
++DTGCGI+ D ++F PF + G + G GTGLGL I + LV+L+GG L + S
Sbjct 875 SVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAP 934
Query 891 NQGSQFKIKLYLPS-KAVVHPITNVQSNQITGYKGE-QKRILVVDNEAVDRGLVANFLRP 948
G+ + L L + + Q T K + R+LVVD+ + L+ L
Sbjct 935 GVGTTVSVDLRLTMVEKSAQATPPAAAAQATPSKPQVSLRVLVVDDHKPNLMLLRQQLDY 994
Query 949 LGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNI------TNVPI 1002
LG + A+SG L D+++ D NMP + G+E A +R T +
Sbjct 995 LGQRVVAADSGEAALALWHEHAFDVVITDCNMPGINGYELARRIRAAEAAPGYGRTRCIL 1054
Query 1003 LIISANVNEREGNPQDAVLSEDFMLKPIDLNLLLSKIGD 1041
+A+ E A +D + KPI ++ L ++ +
Sbjct 1055 FGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNE 1093
>P16575 Virulence sensor protein BvgS [Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251)]
Length=1238
Score = 160 bits (404), Expect = 1e-42
Identities = 120/417 (29%), Positives = 197/417 (47%), Gaps = 13/417 (3%)
Query 656 EIAAHEQTSQHLQDARILAERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQ 715
+I + + L DA+ A+ AN AK+ ++ +SHE+RTP+N+I+G +L +
Sbjct 695 DITERAELLRKLHDAKESADAANRAKTTFLATMSHEIRTPMNAIIGMLELALLRPTDQEP 754
Query 716 GQTALGVISRSGQHLTSLIDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQK 775
+ ++ V S + L LI +LD+++IE GK L V E I++F + QK
Sbjct 755 DRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLPEGAIRVFDGLARQK 814
Query 776 GLKFICDVSEHLPQYVRTDQKRLEQILINLLGNALKFTNKGSIYFKVGYR----FQTAYF 831
G++ + V D R++Q+L NL+GNA+KFT +G + V R F
Sbjct 815 GIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAAHVQF 874
Query 832 EINDTGCGIAHHDLERIFNPFER-GSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSEL 890
++DTGCGI+ D ++F PF + G + G GTGLGL I + LV+L+GG L + S
Sbjct 875 SVSDTGCGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAP 934
Query 891 NQGSQFKIKLYLPS-KAVVHPITNVQSNQITGYKGE-QKRILVVDNEAVDRGLVANFLRP 948
G+ + L L + V + T K + R+LVVD+ + L+ L
Sbjct 935 GVGTTVSVDLRLTMVEKSVQAAPPAAATAATPSKPQVSLRVLVVDDHKPNLMLLRQQLDY 994
Query 949 LGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWETAHLLRQNNI------TNVPI 1002
LG + A+SG L D+++ D NMP + G+E A +R T +
Sbjct 995 LGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYELARRIRAAEAAPGYGRTRCIL 1054
Query 1003 LIISANVNEREGNPQDAVLSEDFMLKPIDLNLLLSKIGDKLGLSWISDSGQDQVQQP 1059
+A+ E A +D + KPI ++ L ++ + + + + Q P
Sbjct 1055 FGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAVARAALPTPPSPQAAAP 1111
>Q9HUI3 Sensor histidine kinase AruS [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=998
Score = 155 bits (391), Expect = 4e-41
Identities = 122/417 (29%), Positives = 212/417 (51%), Gaps = 23/417 (6%)
Query 637 ESRRKAEQETQQQTSLLIDEIAAH-EQTSQHLQDARILAERANEAKSRYVVGISHELRTP 695
E R+A + +++ DE+ E+ + L+ A+ AE A+ AKSR++ +SHE+RTP
Sbjct 462 EDMRQALRTDRRRRDADRDELRRQVERRTASLRRAKDQAEAADRAKSRFLATMSHEIRTP 521
Query 696 LNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSLIDGLLDLSRIETGKISLNMVDV 755
LN ILG ++LL ++ L + + L ++ +G+ L ++++ +L +R+E VD
Sbjct 522 LNGILGMAELL-REASLGERDRQRLRALATAGEGLLAILNEVLHFARLEEAPDVPEAVDF 580
Query 756 HFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRTDQKRLEQILINLLGNALKFTNK 815
+ +E ++ + +P++ + + + + R ++ L Q+L NLLGNA+KFT
Sbjct 581 SLRSLLEDVLTLLEPRARENATRLDLWLDPQVHDGHRGAEQFLRQVLTNLLGNAVKFTEA 640
Query 816 GSIYFKVGYRFQTAYFE-----INDTGCGIAHHDLERIFNPFERGSNVVQGGFTGTGLGL 870
G + +V ++A E + D G GI ERIF F +G + V + GTGLGL
Sbjct 641 GEVRVRVERLARSAGSERLRLSVADDGIGIPEEMRERIFERFTQGGDAVTRRYGGTGLGL 700
Query 871 PIVKLLVDLLGGQLTVNSELNQGSQ--FKIKLYLPS-KAVVHPITNVQSNQITGYKGEQK 927
I K LV+ LGG++ V S + QGS F+I+L L S P +V + +
Sbjct 701 AISKRLVEALGGRIGVESRVGQGSTFWFEIELALASLSGATPPAASVSALE--------- 751
Query 928 RILVVDNEAVDRGLVANFLRPLGFLLKEAESGIECLRQVPAFQPDLILMDLNMPMMGGWE 987
+L+V++ A++R + L G + AE L + DLIL+D+++P M G E
Sbjct 752 -VLLVEDVALNREVAQGLLERDGHRVMLAEDAGPALALCRQRRFDLILLDMHLPGMAGLE 810
Query 988 -TAHLLRQNNITN--VPILIISANVNEREGNPQDAVLSEDFMLKPIDLNLLLSKIGD 1041
A + RQ + N PI +A++ A + + KP+ ++ L +G+
Sbjct 811 LCAGIRRQLDGLNRATPIFAFTASIQPDMVRRYFAAGMQGVLGKPLRMDELRRALGE 867
>P30855 Sensor protein EvgS [Escherichia coli (strain K12)]
Length=1197
Score = 155 bits (391), Expect = 5e-41
Identities = 108/367 (29%), Positives = 182/367 (50%), Gaps = 10/367 (3%)
Query 674 AERANEAKSRYVVGISHELRTPLNSILGYSQLLQKQEQLSAQGQTALGVISRSGQHLTSL 733
A +A AKS+++ +SHE+RTP++SI+G+ +LL Q A+ + +GQ L L
Sbjct 705 AIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGSGLSKEQRVEAISLAYATGQSLLGL 764
Query 734 IDGLLDLSRIETGKISLNMVDVHFPNFIEQMIQMFKPQSEQKGLKFICDVSEHLPQYVRT 793
I +LD+ +IE+G L V P ++ F + K + C + V+
Sbjct 765 IGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHSFGAIAASKSIALSCSSTFPEHYLVKI 824
Query 794 DQKRLEQILINLLGNALKFTNKGSIYF-----KVGYRFQTAYFEINDTGCGIAHHDLERI 848
D + +Q+L NLL NALKFT +G++ + I D+G G++ + +++
Sbjct 825 DPQAFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQL 884
Query 849 FNPFERGSNVVQGGFTGTGLGLPIVKLLVDLLGGQLTVNSELNQGSQFKIKLYLPSKAVV 908
F + + S Q TG+GLGL I K L+ + G L++ S G+ F I + + V
Sbjct 885 FKRYSQTSAGRQQ--TGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQV 942
Query 909 HPITNVQSNQITGYKGEQKRILVVDNEAVDRGLVANFLRPLGFLLKEAESGIECLRQVPA 968
+ IT E+ IL+ D+ +R L+ L LG+ + EA G++ L +V
Sbjct 943 ATVEAKAEQPIT--LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM 1000
Query 969 FQPDLILMDLNMPMMGGWETAHLLRQNNITNVPILIISANVNEREGNPQDAVLSEDFMLK 1028
DL++ D+NMP M G+E LR+ N +++PI ++AN E + + K
Sbjct 1001 QHYDLLITDVNMPNMDGFELTRKLREQN-SSLPIWGLTANAQANEREKGLSCGMNLCLFK 1059
Query 1029 PIDLNLL 1035
P+ L++L
Sbjct 1060 PLTLDVL 1066
Lambda K H a alpha
0.325 0.139 0.421 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 14208093
Database: 22a2411eee46bc2ba5c04d2b0eac6c06.SwissProt.fasta
Posted date: May 9, 2024 1:26 PM
Number of letters in database: 13,983
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
