BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2a07cccfa9a59ff08b4c9e3248e76b16.SwissProt.fasta
14 sequences; 4,181 total letters
Query= ACIAD2522
Length=310
Score E
Sequences producing significant alignments: (Bits) Value
P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis... 90.1 3e-24
P96725 Uncharacterized HTH-type transcriptional regulator YwqM [B... 87.0 4e-23
O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis... 84.3 4e-22
Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis... 80.9 6e-21
P39127 HTH-type transcriptional regulator CitR [Bacillus subtilis... 79.0 3e-20
O32255 Uncharacterized HTH-type transcriptional regulator YvbU [B... 78.2 5e-20
P39592 Uncharacterized HTH-type transcriptional regulator YwbI [B... 78.2 6e-20
O68014 HTH-type transcriptional regulator BenM [Acinetobacter bay... 77.8 8e-20
Q47005 Nitrogen assimilation regulatory protein nac [Escherichia ... 77.4 1e-19
O32186 Uncharacterized HTH-type transcriptional regulator YusT [B... 77.0 1e-19
P44418 Hydrogen peroxide-inducible genes activator [Haemophilus i... 76.6 2e-19
O34685 HTH-type transcriptional regulator YofA [Bacillus subtilis... 74.7 8e-19
P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necat... 75.1 8e-19
P55181 Uncharacterized HTH-type transcriptional regulator YxjO [B... 74.3 1e-18
>P94501 HTH-type transcriptional regulator GltR [Bacillus subtilis
(strain 168)]
Length=296
Score = 90.1 bits (222), Expect = 3e-24
Identities = 72/285 (25%), Positives = 126/285 (44%), Gaps = 7/285 (2%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
MN + ++ F AR S +KAA+ LN Q V+ ++ E +L KL R SR + LT
Sbjct 1 MNIQLLQVFLTTAREGSISKAALTLNYAQSNVTNKIQQLENDLQTKLFYRHSRGITLTPP 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAIQATIRLGVAETIVHTWLVDFIEQVQLEFPQVT 120
G+++ Y+EK + ++ A+ E+ A +R+G ET WL + +P V
Sbjct 61 GQILVSYSEKILHTIEEARAAMGESSAPSGPLRIGSMETTAAVWLPQLLAHYNNLYPNVD 120
Query 121 IDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMSRQ 180
+++V T QAV EL+ AF+ D ++ + + + L+ H
Sbjct 121 LNLVTGPTEQQIQAVLHYELNGAFISGPIEHPDLVQEKVLD-EEMVLVTSASHPVIS--- 176
Query 181 LSLKDISQTTILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMGIGII 240
S++D+ T+L + K L L K + L +I G+GI ++
Sbjct 177 -SIQDVQTQTMLVFRKGCSYRAKLNHILQEEGLLPIKLMEFGILEAIIGCVSAGLGISLL 235
Query 241 PHLSVIHELRERRLQILPAELTLKPFRFSCIYVAGKDDLVKQQLS 285
P + +E R++ ++ K S +++ KD L+ LS
Sbjct 236 PRSIIASHEKEGRIR--SHTISDKYSFVSTMFIRRKDTLITPALS 278
>P96725 Uncharacterized HTH-type transcriptional regulator YwqM
[Bacillus subtilis (strain 168)]
Length=293
Score = 87.0 bits (214), Expect = 4e-23
Identities = 67/260 (26%), Positives = 123/260 (47%), Gaps = 6/260 (2%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M K + F A +F A LN Q +V+ ++ S E+E+G L ER + L LT+
Sbjct 1 MELKQLITFITAAEHVNFTLTAKMLNYAQSSVTSQIKSLEEEIGTPLFERLGKRLILTEA 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAIQATIRLGVAETIVHTWLVDFIEQVQLEFPQVT 120
GK YA+K I L ++ A ++ + T+++G E+ L I++ + FPQV
Sbjct 61 GKTFKSYAQKIIALTEEAKMATNQVRETTGTLKIGATESQCTYRLPPIIKEFKQAFPQVK 120
Query 121 IDIVINIT-PVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMSR 179
+ I+ K+ + G+LD+ F+L+ D + + ++A H
Sbjct 121 LIFKPYISNEQAKEQLLQGQLDITFILDVNRMEDALHVESLIQDEIKMVAANDHPFPADL 180
Query 180 QLSLKDI-SQTTILTYPKTTYPYVDLKKQLTLHQFK-EPKTITSYSLATLIKMTEEGMGI 237
++LKD+ ++T +LT +Y + + LH P + S+ + + G+GI
Sbjct 181 PVTLKDLQNETLLLTEDGCSYRTL---FENNLHDSGIYPNKLEFVSIEAIKQCVMAGLGI 237
Query 238 GIIPHLSVIHELRERRLQIL 257
GI+P ++V ++ R++ L
Sbjct 238 GILPEMTVKDDIAAGRMKEL 257
>O35038 HTH-type transcriptional regulator YtlI [Bacillus subtilis
(strain 168)]
Length=308
Score = 84.3 bits (207), Expect = 4e-22
Identities = 67/249 (27%), Positives = 119/249 (48%), Gaps = 21/249 (8%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M +SI+ F+ + + SF KAA LN +QP +S R+ EQ+LGV L ER +SLQLT
Sbjct 1 MELRSIKTFHTIVKFGSFYKAAEILNYSQPTISMRMKQLEQDLGVLLFER-GKSLQLTKA 59
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAIQA-TIRLGVAETIVHTWLVDFIEQVQLEFPQV 119
GK+ YE + + L LS+ K +A I +GV+E + ++ +++P++
Sbjct 60 GKLFYERTGDLLMQYEALKHNLSDLKEEEAGIINIGVSEPTASLIFPEILKDFLMDYPKI 119
Query 120 TIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSF------LIAPRFH 173
T++I ++ Q + G +D A E EL L + H F +I H
Sbjct 120 TVNIKVDDANTCSQKLLDGTIDFAVCGEP-------ELILENYYHPFFYDTLNVIVSDQH 172
Query 174 KRFMSRQLSLKDISQTTILTYPKTTYPYVDLKKQLTL---HQFKEPKTITSYSLATLIKM 230
+ + L D+++ + P + +++ L +++K+ + +S S ++
Sbjct 173 PLAEKKAVHLSDLAEERFIFTPANCPIRLQIEQHLHRELGNRYKKMELTSSMSHEYYVR- 231
Query 231 TEEGMGIGI 239
E +GI I
Sbjct 232 --ENIGISI 238
>Q04778 HTH-type transcriptional regulator AlsR [Bacillus subtilis
(strain 168)]
Length=302
Score = 80.9 bits (198), Expect = 6e-21
Identities = 55/244 (23%), Positives = 112/244 (46%), Gaps = 4/244 (2%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M + ++ F VA F KAA +LN TQP +SQ++ E+E+GV LL+RT R ++LT
Sbjct 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60
Query 61 GKVVYEYAE-KYIQLNQDLLKALSENKAIQATIRLGVAETIVHTWLVDFIEQVQLEFPQV 119
G++ + +Q+ Q + A + Q + +G + + +L + + + +FP V
Sbjct 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSV 120
Query 120 TIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMSR 179
I++ + ++ + G +D+ +L + + + L P+ H
Sbjct 121 KIELREISSSRQQEELLKGNIDIG-ILHPPLQHTALHIETAQSSPCVLALPKQHPLTSKE 179
Query 180 QLSLKDISQTTILTYPKTTYP--YVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMGI 237
++++D+ I+T K +P Y+D + F+ + +I + G+G+
Sbjct 180 SITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGM 239
Query 238 GIIP 241
+P
Sbjct 240 TFVP 243
>P39127 HTH-type transcriptional regulator CitR [Bacillus subtilis
(strain 168)]
Length=291
Score = 79.0 bits (193), Expect = 3e-20
Identities = 65/274 (24%), Positives = 128/274 (47%), Gaps = 17/274 (6%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M+FK + F A+ +F K A L +QP V+ + E+E+ KL ER R +QLTD+
Sbjct 1 MDFKWLHTFVTAAKYENFRKTAETLFLSQPTVTVHIKQLEKEISCKLFERKGRQIQLTDE 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSE----NKAIQATIRLGVAETIVHTWLVDFIEQVQLEF 116
G+ YA ++L D +++E + T++L V+ I T L +++
Sbjct 61 GRAYLPYA---LRLLDDYENSMAELHRVRQGYSQTLQLAVSPLIADTVLPSVMKRYTAMN 117
Query 117 PQVTIDIVINITPVLKQAVQSGELD--MAFLLESGCDFDCIELPLCEFQHSFLIAPRFHK 174
+ + + I + + +++GE D ++ L C C ++ ++ K
Sbjct 118 TETEMAVTIFESAEIASLIKAGEADIGLSCLKVQSSSLSC----HCLYKDPVVLVAPPDK 173
Query 175 RFM-SRQLSLKDI-SQTTILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKMTE 232
RF+ ++ K++ Q +LT+ Y + DL +Q+ + F +T+ + +
Sbjct 174 RFIEDNEIDAKEVLEQYLLLTHNHPDY-WDDLLRQVRM-TFPFVRTMKVTQTHITKRFIK 231
Query 233 EGMGIGIIPHLSVIHELRERRLQILPAELTLKPF 266
EG+G+ +P +V EL E+++ +P + P+
Sbjct 232 EGLGVSFLPLSTVKRELAEKQMIRIPYQSVQLPY 265
>O32255 Uncharacterized HTH-type transcriptional regulator YvbU
[Bacillus subtilis (strain 168)]
Length=292
Score = 78.2 bits (191), Expect = 5e-20
Identities = 63/250 (25%), Positives = 120/250 (48%), Gaps = 13/250 (5%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRS-LQLTD 59
M ++ F +A SF KA LN TQPAVS +++ E EL VKL+ R R+ L LTD
Sbjct 1 MTITQLKVFVKIAETGSFTKAGQALNMTQPAVSHAISAIEAELDVKLIIRDRRNGLMLTD 60
Query 60 KGKVVYEYAEKYIQLNQDLLKALSENKAIQ-ATIRLGVAETIVHTWLVDFIEQVQLEFPQ 118
GK + + + ++ + + + + K ++ TI +G T ++ I + + ++P+
Sbjct 61 TGKQILVHIREVLKGIEKVEQVAAAEKGLELGTIHIGTFSTASAYFMPKLISEFKQKYPK 120
Query 119 VTIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMS 178
+ + + +K+ + + +D+ LL + + I L + ++ H
Sbjct 121 LELVLHEGTVNEVKEWLHTRMIDVGILLYPTEEMEYIHL---KKDKMAVVLRDDHPLASH 177
Query 179 RQLSLKDIS-QTTILTYPKTTYPYVDLKKQ--LTLHQFKEPKTITSYSLATLIKMTEEGM 235
++LKD+ + I+ P++D+ +Q TLH T Y++ T I M EG+
Sbjct 178 SAITLKDLDHEPMIVCDGGYESPFIDMFRQAGATLH-----PAFTVYNINTSISMIREGL 232
Query 236 GIGIIPHLSV 245
G+ I+ +S+
Sbjct 233 GLAILSEMSM 242
>P39592 Uncharacterized HTH-type transcriptional regulator YwbI
[Bacillus subtilis (strain 168)]
Length=301
Score = 78.2 bits (191), Expect = 6e-20
Identities = 61/282 (22%), Positives = 130/282 (46%), Gaps = 21/282 (7%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M+ + + F VARL SF KA+ L +QP +S+ + + E+ELG++L R R ++LTD
Sbjct 1 MDIRHLTYFLEVARLKSFTKASQSLYVSQPTISKMIKNLEEELGIELFYRNGRQVELTDA 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAI-QATIRLGVAETIVHTWLVDFIEQVQLEFPQV 119
G +Y A++ I+ Q+L L++ + + +R+G+ I + + + +P V
Sbjct 61 GHSMYVQAQEIIKSFQNLTSELNDIMEVKKGHVRIGLPPMIGSGFFPRVLGDFRENYPNV 120
Query 120 TIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCE-FQHSF--------LIAP 170
T +V + + +++ V G LD+ ++ LP E HSF L+
Sbjct 121 TFQLVEDGSIKVQEGVGDGSLDIGVVV----------LPANEDIFHSFTIVKETLMLVVH 170
Query 171 RFHKRFMSRQLSLKDISQTTILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKM 230
H+ ++ L+++ + + + + + + F+ + + +M
Sbjct 171 PSHRLADEKECQLRELKDEPFIFFREDFVLHNRIMTECIKAGFRPHIIYETSQWDFISEM 230
Query 231 TEEGMGIGIIPHLSVIHELRERRLQILPAELTLKPFRFSCIY 272
+GIG++P + L +++++P + P+ + I+
Sbjct 231 VSANLGIGLLPE-RICRGLDPEKVKVIPLVDPVIPWHLAIIW 271
>O68014 HTH-type transcriptional regulator BenM [Acinetobacter
baylyi (strain ATCC 33305 / BD413 / ADP1)]
Length=304
Score = 77.8 bits (190), Expect = 8e-20
Identities = 59/245 (24%), Positives = 107/245 (44%), Gaps = 5/245 (2%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M + + F V SF KAA KL QP +S+++ + E+ELG++LLER SR ++ T +
Sbjct 1 MELRHLRYFVAVVEEQSFTKAADKLCIAQPPLSRQIQNLEEELGIQLLERGSRPVKTTPE 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAIQATIRLGVAETIVHTWLVDFIEQVQLEFPQVT 120
G Y+YA K + ++ +++ TIR+G +++ L I + P +
Sbjct 61 GHFFYQYAIKLLSNVDQMVSMTKRIASVEKTIRIGFVGSLLFGLLPRIIHLYRQAHPNLR 120
Query 121 IDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFH--KRFMS 178
I++ T +A++ G +D F D I+ L + + H +
Sbjct 121 IELYEMGTKAQTEALKEGRIDAGFGRLKISD-PAIKRTLLRNERLMVAVHASHPLNQMKD 179
Query 179 RQLSLKDISQTTILTYPKTTYP--YVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMG 236
+ + L D+ IL YP + P + + H + K + + + G G
Sbjct 180 KGVHLNDLIDEKILLYPSSPKPNFSTHVMNIFSDHGLEPTKINEVREVQLALGLVAAGEG 239
Query 237 IGIIP 241
I ++P
Sbjct 240 ISLVP 244
>Q47005 Nitrogen assimilation regulatory protein nac [Escherichia
coli (strain K12)]
Length=305
Score = 77.4 bits (189), Expect = 1e-19
Identities = 61/243 (25%), Positives = 115/243 (47%), Gaps = 6/243 (2%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
MNF+ ++ F + + S +AA L+ QPA+SQ++ + E EL +LL RT R + TD
Sbjct 1 MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDA 60
Query 61 GKVVYEYAEKYI-QLNQDLLKALSENKAIQATIRLGVAE-TIVHTWLVDFIEQVQLEFPQ 118
GK++Y +A + Q Q L + +A+ + +G A T + + ++ V+ EFP+
Sbjct 61 GKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPE 120
Query 119 VTIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMS 178
+ I + N VL + + + +LDMA + E L + + FL+ +
Sbjct 121 IVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLK-EDLFLVGT---QDCPG 176
Query 179 RQLSLKDISQTTILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMGIG 238
+ + + I+Q + + + + + +L + S+ATL GMG+
Sbjct 177 QSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGEIESIATLTAAIASGMGVA 236
Query 239 IIP 241
++P
Sbjct 237 VLP 239
>O32186 Uncharacterized HTH-type transcriptional regulator YusT
[Bacillus subtilis (strain 168)]
Length=295
Score = 77.0 bits (188), Expect = 1e-19
Identities = 73/279 (26%), Positives = 114/279 (41%), Gaps = 16/279 (6%)
Query 9 FYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDKGKVVYEYA 68
F VAR + KAA++L Q V+ R+ E ELG L R +R + L+ GK++ +YA
Sbjct 9 FQMVAREGTITKAALQLGYVQSNVTARIQQLEAELGTTLFLRHNRGMTLSASGKLLLDYA 68
Query 69 EKYIQLNQDLLKALSENKAIQATIRLGVAETIVHTWLVDFIEQVQLEFPQVTIDIVINIT 128
K I L + KALS + + +G +T L + E P V + + T
Sbjct 69 NKIIGLLDEASKALSSSAEPSGPLMIGCTQTTAAVRLPKLLASYYEEHPNVQLSLTTGHT 128
Query 129 PVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMSRQLSLKDISQ 188
L V ELD AF+ GC+ EL E +F P + S+ D+ +
Sbjct 129 QFLLDKVLRYELDGAFI---GCECHHPEL---ESYPAFEEEP-----VVVSAASVPDVEE 177
Query 189 T---TILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMGIGIIPHLSV 245
IL Y L+K L +P + +L +I G+GI ++P V
Sbjct 178 AITKPILVYSTGCSYRETLEKWLRSVGVTQPVIMEFGTLEAIIGGVTAGLGISLLPRTVV 237
Query 246 IHELRERRLQILPAELTLKPFRFSCIYVAGKDDLVKQQL 284
E +++ P L + ++ KD + L
Sbjct 238 QKHEAEGSIRLYPLPEALSQMKTE--FIVRKDSFISSAL 274
>P44418 Hydrogen peroxide-inducible genes activator [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=301
Score = 76.6 bits (187), Expect = 2e-19
Identities = 66/265 (25%), Positives = 120/265 (45%), Gaps = 14/265 (5%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
MN + +E ++ F +AA N +QP +S ++ E ELG+ LLERTSR + T
Sbjct 1 MNIRDLEYLVALSEYKHFRRAADSCNVSQPTLSGQIRKLEDELGIILLERTSRKVLFTQS 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAIQAT--IRLGVAETIVHTWLVDFIEQVQLEFPQ 118
G ++ + A ++ LLK ++ N+ + T + +G+ T+ L + ++ FP
Sbjct 61 GMLLVDQARTVLR-EVKLLKEMASNQGKEMTGPLHIGLIPTVGPYLLPYIVPMLKAAFPD 119
Query 119 VTIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIA-PRFHKRFM 177
+ + + T L + +++G LD A + IE+P+ F L+A H
Sbjct 120 LEVFLYEAQTHQLLEQLETGRLDCAIVATVPETEAFIEVPI--FNEKMLLAVSEHHPWAQ 177
Query 178 SRQLSLKDISQTTILTYPKTTYPYVDLKKQLTLHQF----KEPKTITSYSLATLIKMTEE 233
+L + ++ +L L+ Q + F KE + SL TL M
Sbjct 178 ESKLPMNQLNGQEMLMLDDGHC----LRNQALDYCFTAGAKENSHFQATSLETLRNMVAA 233
Query 234 GMGIGIIPHLSVIHELRERRLQILP 258
GI +P L+V++E + ++ +P
Sbjct 234 NAGITFMPELAVLNEGTRKGVKYIP 258
>O34685 HTH-type transcriptional regulator YofA [Bacillus subtilis
(strain 168)]
Length=285
Score = 74.7 bits (182), Expect = 8e-19
Identities = 62/245 (25%), Positives = 111/245 (45%), Gaps = 9/245 (4%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M ++ F VAR S KAA LN Q V+ R+++ E++L ++L RT+R ++LT
Sbjct 1 MESGDLKIFQAVAREGSITKAAQMLNYVQSNVTARVHNLEEDLNIRLFHRTNRGMKLTAA 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAIQATIRLGVAETIVHTWLVDFIEQVQLEFPQVT 120
G+ + +YA++ + L K+ ++ + +R+G ET+ T L + FP+V
Sbjct 61 GENLLQYADQVLSLLDQAEKSTRMSRQPKGPLRIGSLETMAVTHLPEHAASFLRRFPEVD 120
Query 121 IDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMSRQ 180
+ + T L Q V ++D AF+ + + H L+ SR+
Sbjct 121 LSVNTADTHHLIQQVLDHKVDGAFVYG---PVEHAAVRQLHVSHDELVL------ISSRE 171
Query 181 LSLKDISQTTILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMGIGII 240
+ +D+ Q +L + +K+ L K I +L +IK GMG ++
Sbjct 172 GTAEDMLQQPMLFFGAGCSHRDRVKRLLEEAGIHNQKIIEFGTLEAIIKGVSAGMGTALL 231
Query 241 PHLSV 245
P +V
Sbjct 232 PKSAV 236
>P42722 HTH-type transcriptional regulator CfxR [Cupriavidus necator
(strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442
/ H16 / Stanier 337)]
Length=317
Score = 75.1 bits (183), Expect = 8e-19
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 3/258 (1%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
+ + ++ F VAR SF +AA +L+ TQPAVS ++ E +G+ L ER L LT+
Sbjct 8 LTLRQLQIFVTVARHASFVRAAEELHLTQPAVSMQVKQLESVVGMALFERVKGQLTLTEP 67
Query 61 GKVVYEYAEKYIQLNQDLLKALSENKAI-QATIRLGVAETIVHTWLVDFIEQVQLEFPQV 119
G + +A + + +D + L K + Q +I +G+ T + + + P V
Sbjct 68 GDRLLHHASRILGEVKDAEEGLQAVKDVEQGSITIGLISTSKY-FAPKLLAGFTALHPGV 126
Query 120 TIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMSR 179
+ I L + +Q +D+A + + D + P+ H + +PR H ++
Sbjct 127 DLRIAEGNRETLLRLLQDNAIDLALMGRPPRELDAVSEPIAAHPHVLVASPR-HPLHDAK 185
Query 180 QLSLKDISQTTILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMGIGI 239
L+++ T L + + H F K IT S T+ + GMGI +
Sbjct 186 GFDLQELRHETFLLREPGSGTRTVAEYMFRDHLFTPAKVITLGSNETIKQAVMAGMGISL 245
Query 240 IPHLSVIHELRERRLQIL 257
+ ++ ELR + +L
Sbjct 246 LSLHTLGLELRTGEIGLL 263
>P55181 Uncharacterized HTH-type transcriptional regulator YxjO
[Bacillus subtilis (strain 168)]
Length=291
Score = 74.3 bits (181), Expect = 1e-18
Identities = 70/297 (24%), Positives = 130/297 (44%), Gaps = 12/297 (4%)
Query 1 MNFKSIENFYWVARLNSFNKAAVKLNTTQPAVSQRLNSFEQELGVKLLERTSRSLQLTDK 60
M+ K ++ F A SF +AA L TQPAVSQ + E EL ++L + R + LTD+
Sbjct 1 MDLKWLQTFIAAAESESFREAAEHLYLTQPAVSQHMRKLEDELDMRLFLHSGRRVVLTDE 60
Query 61 GKVVYEYAEKYIQLNQDLLKALSE-NKAIQATIRLGVAETIVHTWLVDFIEQVQLEFPQV 119
G++ YA++ I + Q + +S+ + ++ L V I L F+ + P V
Sbjct 61 GRLFLPYAKEMIHVYQAGKQKVSQWKQGYSRSLTLAVHPYIASYILPRFLPAYIQKHPHV 120
Query 120 TIDIVINITPVLKQAVQSGELDMAFLLESGCDFDCIELPLCEFQHSFLIAPRFHKRFMSR 179
+ + + +KQAV+ E D+ + +CE + +A F + SR
Sbjct 121 ELSTHVAGSDAIKQAVEHNEADIGLSRKDPNTNTLYYQHICE--GTLCLAAPFQE---SR 175
Query 180 QLSLKDISQTTILTYPKTTYPYVDLKKQLTLHQFKEPKTITSYSLATLIKMTEEGMGIGI 239
+ +++ +LT+ +Y L + + + + + T + M + GMG
Sbjct 176 PDAASVLTRYRLLTHDHPSYGDAFLDNIRSHYPYLQMMAVGQTD--TAVHMMKAGMGASF 233
Query 240 IPHLSVIHELRERRLQIL--PAELTLKPFRFSCIYVAGKDDLVKQQLSKMAYQIAQQ 294
+P + E E++L + PA L L + ++ +D+ Q M + Q+
Sbjct 234 LPTYIIKQEEAEKKLMAVSTPAHLELPASQTFMMWKRNSEDI--QHFHAMLHDFMQR 288
Lambda K H a alpha
0.324 0.137 0.392 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 941015
Database: 2a07cccfa9a59ff08b4c9e3248e76b16.SwissProt.fasta
Posted date: May 20, 2024 5:08 AM
Number of letters in database: 4,181
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
