BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: d0da4841fadff97a65b9ebf61e362e7e.SwissProt.fasta
14 sequences; 2,696 total letters
Query= ACIAD2530
Length=199
Score E
Sequences producing significant alignments: (Bits) Value
P0A9U7 HTH-type transcriptional regulator PuuR [Shigella flexneri] 68.9 2e-18
P0A9U6 HTH-type transcriptional regulator PuuR [Escherichia coli ... 68.9 2e-18
P22753 HTH-type transcriptional regulator SinR [Bacillus lichenif... 52.8 5e-13
P06533 HTH-type transcriptional regulator SinR [Bacillus subtilis... 49.7 7e-12
A0QVU1 Transcriptional regulator ClgR [Mycolicibacterium smegmati... 49.7 8e-12
P77626 HTH-type transcriptional regulator SutR [Escherichia coli ... 48.5 6e-11
C1D3U5 HTH-type transcriptional regulator DdrOP3 [Deinococcus des... 41.6 9e-09
C1CYP4 HTH-type transcriptional regulator DdrOC [Deinococcus dese... 40.4 2e-08
P44030 Uncharacterized HTH-type transcriptional regulator HI_0659... 37.4 2e-07
P9WMI0 HTH-type transcriptional regulator RamB [Mycobacterium tub... 37.4 8e-07
P9WMI1 HTH-type transcriptional regulator RamB [Mycobacterium tub... 37.4 8e-07
Q8TK90 Putative HTH-type transcriptional regulatory protein MA_35... 37.0 1e-06
Q8FHF3 Antitoxin HipB [Escherichia coli O6:H1 (strain CFT073 / AT... 33.9 3e-06
P23873 Antitoxin HipB [Escherichia coli (strain K12)] 33.1 5e-06
>P0A9U7 HTH-type transcriptional regulator PuuR [Shigella flexneri]
Length=185
Score = 68.9 bits (167), Expect = 2e-18
Identities = 38/161 (24%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
Query 15 GIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLFS 74
G ++ RQ+QGL A+++G++ +S IE +VS ++ TL +L V G+ +S FS
Sbjct 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68
Query 75 QYDQQESHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEAYLVSMDDASEEFPT 134
+ ++ + +++ D +E+ +G L H+ P + + +
Sbjct 69 EPEKPDEPQVVINQDDLIEMGSQGVS-----MKLVHNGNPNRTLAMIFETYQPGTTTGER 123
Query 135 FAHPGTEMLYLVEGELIYRHGQEVFHMQPGDCLTLEGEIPH 175
H G E+ ++EGE++ + +H+ G + IPH
Sbjct 124 IKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPH 164
>P0A9U6 HTH-type transcriptional regulator PuuR [Escherichia coli
(strain K12)]
Length=185
Score = 68.9 bits (167), Expect = 2e-18
Identities = 38/161 (24%), Positives = 76/161 (47%), Gaps = 5/161 (3%)
Query 15 GIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLFS 74
G ++ RQ+QGL A+++G++ +S IE +VS ++ TL +L V G+ +S FS
Sbjct 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68
Query 75 QYDQQESHAMLVKSGDGMEVVRRGTEKGHTYRLLTHSRGPRKNFEAYLVSMDDASEEFPT 134
+ ++ + +++ D +E+ +G L H+ P + + +
Sbjct 69 EPEKPDEPQVVINQDDLIEMGSQGVS-----MKLVHNGNPNRTLAMIFETYQPGTTTGER 123
Query 135 FAHPGTEMLYLVEGELIYRHGQEVFHMQPGDCLTLEGEIPH 175
H G E+ ++EGE++ + +H+ G + IPH
Sbjct 124 IKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINTGIPH 164
>P22753 HTH-type transcriptional regulator SinR [Bacillus licheniformis]
Length=111
Score = 52.8 bits (125), Expect = 5e-13
Identities = 28/73 (38%), Positives = 48/73 (66%), Gaps = 1/73 (1%)
Query 14 IGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIE-NAQVSTSLETLSRLCDVLGIPMSTL 72
IG +IK++R+E+G LSE+A+ AG+++ LS IE N Q + S++ L ++ VL + + TL
Sbjct 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61
Query 73 FSQYDQQESHAML 85
++ D+ E L
Sbjct 62 LNEKDETEYDGQL 74
>P06533 HTH-type transcriptional regulator SinR [Bacillus subtilis
(strain 168)]
Length=111
Score = 49.7 bits (117), Expect = 7e-12
Identities = 27/73 (37%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query 14 IGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIE-NAQVSTSLETLSRLCDVLGIPMSTL 72
IG +IK++R+E+G LSE+A+ AG+++ LS IE N Q + S++ L ++ VL + + TL
Sbjct 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61
Query 73 FSQYDQQESHAML 85
+ + E L
Sbjct 62 LDEKHETEYDGQL 74
>A0QVU1 Transcriptional regulator ClgR [Mycolicibacterium smegmatis
(strain ATCC 700084 / mc(2)155)]
Length=112
Score = 49.7 bits (117), Expect = 8e-12
Identities = 28/74 (38%), Positives = 42/74 (57%), Gaps = 2/74 (3%)
Query 10 LEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPM 69
L + IG ++ R +QG L EV+ A +S G LS++E + S E LS +CD L +P+
Sbjct 5 LREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPL 64
Query 70 STLFSQYDQQESHA 83
S + + D ES A
Sbjct 65 SRVLT--DAGESMA 76
>P77626 HTH-type transcriptional regulator SutR [Escherichia coli
(strain K12)]
Length=178
Score = 48.5 bits (114), Expect = 6e-11
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query 10 LEQYIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPM 69
L +++ +K+ RQ++G LS +A+ G+S+ ML +IE + S ++ TL ++ L +P
Sbjct 4 LARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 63
Query 70 STLFSQ--------YDQQESHAMLVKS 88
ST S YD Q+ AM++ S
Sbjct 64 STFISPPQSATPSVYDPQQ-QAMVITS 89
>C1D3U5 HTH-type transcriptional regulator DdrOP3 [Deinococcus
deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)]
Length=129
Score = 41.6 bits (96), Expect = 9e-09
Identities = 22/56 (39%), Positives = 33/56 (59%), Gaps = 0/56 (0%)
Query 17 QIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTL 72
+++ RQE+GL+L ++A A IS LS +E + + SLETL L GI + L
Sbjct 6 RLRELRQERGLRLKDIAGAAQISVPYLSDLERGRTNPSLETLQSLASTYGITVHDL 61
>C1CYP4 HTH-type transcriptional regulator DdrOC [Deinococcus
deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)]
Length=129
Score = 40.4 bits (93), Expect = 2e-08
Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 0/56 (0%)
Query 17 QIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTL 72
+++ R E+GL+L +VA++A IS LS +E + + SLETL L I + L
Sbjct 6 RLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDL 61
>P44030 Uncharacterized HTH-type transcriptional regulator HI_0659
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd)]
Length=98
Score = 37.4 bits (85), Expect = 2e-07
Identities = 17/49 (35%), Positives = 30/49 (61%), Gaps = 0/49 (0%)
Query 22 RQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMS 70
RQ+ G+ ++ ++G+ Q M+++IE Q + LETL +L LG +S
Sbjct 41 RQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKLLAPLGKTLS 89
>P9WMI0 HTH-type transcriptional regulator RamB [Mycobacterium
tuberculosis (strain CDC 1551 / Oshkosh)]
Length=474
Score = 37.4 bits (85), Expect = 8e-07
Identities = 19/65 (29%), Positives = 37/65 (57%), Gaps = 0/65 (0%)
Query 13 YIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTL 72
Y+G ++++ R E+G + +AQ+ IS L++IE+ ++ L R+ +V G+ +
Sbjct 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64
Query 73 FSQYD 77
SQ D
Sbjct 65 ASQDD 69
Score = 17.3 bits (33), Expect = 2.5
Identities = 5/16 (31%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 132 FPTFAHPGTEMLYLVE 147
+ TFA+PG ++ + +
Sbjct 357 YETFANPGKILVQIAQ 372
>P9WMI1 HTH-type transcriptional regulator RamB [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=474
Score = 37.4 bits (85), Expect = 8e-07
Identities = 19/65 (29%), Positives = 37/65 (57%), Gaps = 0/65 (0%)
Query 13 YIGIQIKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTL 72
Y+G ++++ R E+G + +AQ+ IS L++IE+ ++ L R+ +V G+ +
Sbjct 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64
Query 73 FSQYD 77
SQ D
Sbjct 65 ASQDD 69
Score = 17.3 bits (33), Expect = 2.5
Identities = 5/16 (31%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 132 FPTFAHPGTEMLYLVE 147
+ TFA+PG ++ + +
Sbjct 357 YETFANPGKILVQIAQ 372
>Q8TK90 Putative HTH-type transcriptional regulatory protein MA_3524
[Methanosarcina acetivorans (strain ATCC 35395 / DSM
2834 / JCM 12185 / C2A)]
Length=328
Score = 37.0 bits (84), Expect = 1e-06
Identities = 17/61 (28%), Positives = 36/61 (59%), Gaps = 3/61 (5%)
Query 13 YIGIQ---IKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPM 69
YI I+ +K+ R +Q + L +A + G+S+ +SK E + S++ + +L D+ G+ +
Sbjct 124 YISIEGDLLKKARTDQSMSLGTLASMVGVSRRTISKYEEEGMDASIDVVLQLEDIFGVEL 183
Query 70 S 70
+
Sbjct 184 A 184
Score = 15.4 bits (28), Expect = 10.0
Identities = 4/14 (29%), Positives = 9/14 (64%), Gaps = 0/14 (0%)
Query 63 DVLGIPMSTLFSQY 76
D+L + + TL+ +
Sbjct 95 DILALNVQTLYDYF 108
>Q8FHF3 Antitoxin HipB [Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC)]
Length=94
Score = 33.9 bits (76), Expect = 3e-06
Identities = 19/53 (36%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 18 IKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMS 70
+K RQ+ G SE+A+ GI Q +S EN +TSL T ++ L + M+
Sbjct 23 MKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTSLTTFFKILQSLELSMT 75
>P23873 Antitoxin HipB [Escherichia coli (strain K12)]
Length=88
Score = 33.1 bits (74), Expect = 5e-06
Identities = 20/64 (31%), Positives = 33/64 (52%), Gaps = 0/64 (0%)
Query 18 IKRHRQEQGLKLSEVAQIAGISQGMLSKIENAQVSTSLETLSRLCDVLGIPMSTLFSQYD 77
+K RQ+ G SE+A+ GI Q +S EN +T+L T ++ L + M+ ++
Sbjct 17 MKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNA 76
Query 78 QQES 81
ES
Sbjct 77 SPES 80
Lambda K H a alpha
0.319 0.135 0.385 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 348404
Database: d0da4841fadff97a65b9ebf61e362e7e.SwissProt.fasta
Posted date: May 20, 2024 9:21 AM
Number of letters in database: 2,696
Number of sequences in database: 14
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
