BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 1ceb7895ce1e9f763d3d507e0af673a6.SwissProt.fasta
           1 sequences; 195 total letters



Query= ACIAD2575

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6GQA6 COP9 signalosome complex subunit 8 [Xenopus laevis]            33.9    4e-07


>Q6GQA6 COP9 signalosome complex subunit 8 [Xenopus laevis]
Length=195

 Score = 33.9 bits (76),  Expect = 4e-07
 Identities = 17/57 (30%), Positives = 25/57 (44%), Gaps = 7/57 (12%)

Query  100  VKTLHDAKDHLWERASESWHNSLFLFSIERPGLFSSAHAYAWSTEEQQIKQISIDHT  156
            +K+ H     +WE   + W           PG+++S  AY WS   QQI +   D T
Sbjct  66   IKSSHSELGGIWEVGQKIWQRDF-------PGIYTSISAYQWSENIQQIMEAVRDAT  115


 Score = 15.4 bits (28),  Expect = 0.58
 Identities = 5/21 (24%), Positives = 12/21 (57%), Gaps = 0/21 (0%)

Query  94   KWTEHQVKTLHDAKDHLWERA  114
            +W+E+  + +   +D   +RA
Sbjct  99   QWSENIQQIMEAVRDATQQRA  119



Lambda      K        H        a         alpha
   0.325    0.137    0.447    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 27280


  Database: 1ceb7895ce1e9f763d3d507e0af673a6.SwissProt.fasta
    Posted date:  May 20, 2024  12:17 AM
  Number of letters in database: 195
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40