BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 8700300747f9cc1844d2287d741340f8.SwissProt.fasta
           16 sequences; 3,851 total letters



Query= ACIAD2578

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q1LKN3 DNA repair protein RecO [Cupriavidus metallidurans (strain...  120     2e-36
B8F3C9 DNA repair protein RecO [Glaesserella parasuis serovar 5 (...  114     1e-34
B0BUA8 DNA repair protein RecO [Actinobacillus pleuropneumoniae s...  114     2e-34
A3MZR1 DNA repair protein RecO [Actinobacillus pleuropneumoniae s...  114     2e-34
A6VAK4 DNA repair protein RecO [Pseudomonas aeruginosa (strain PA7)]  113     3e-34
Q02HS4 DNA repair protein RecO [Pseudomonas aeruginosa (strain UC...  113     4e-34
B7UYX0 DNA repair protein RecO [Pseudomonas aeruginosa (strain LE...  113     4e-34
Q9XCX7 DNA repair protein RecO [Pseudomonas aeruginosa (strain AT...  113     4e-34
B3GX87 DNA repair protein RecO [Actinobacillus pleuropneumoniae s...  112     6e-34
B3PL65 DNA repair protein RecO [Cellvibrio japonicus (strain Ueda...  111     2e-33
Q7VL77 DNA repair protein RecO [Haemophilus ducreyi (strain 35000...  110     6e-33
Q3IDL0 DNA repair protein RecO [Pseudoalteromonas translucida (st...  108     1e-32
P44642 DNA repair protein RecO [Haemophilus influenzae (strain AT...  104     9e-31
P51838 DNA repair protein RecO [Coxiella burnetii (strain RSA 493...  95.5    2e-27
P0A285 DNA repair protein RecO [Salmonella typhimurium (strain LT...  82.4    2e-22
Q9ZHY2 DNA repair protein RecO [Neisseria gonorrhoeae (strain ATC...  67.0    8e-17


>Q1LKN3 DNA repair protein RecO [Cupriavidus metallidurans (strain 
ATCC 43123 / DSM 2839 / NBRC 102507 / CH34)]
Length=298

 Score = 120 bits (302),  Expect = 2e-36
 Identities = 83/238 (35%), Positives = 120/238 (50%), Gaps = 29/238 (12%)

Query  8    GYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGEL  58
            G+++H   YRE S ++ +FT ++GR+  + +    P          + PI L  TG+GE+
Sbjct  69   GFVLHAHPYRETSLVLDVFTRDHGRVAMVAKGAKRPHSALRAVLQHFHPIALSWTGRGEV  128

Query  59   KNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQH  118
            K  TK E +   +   GDA  +GFYLNE+LLR CP E+A P  F+ Y   L +L     H
Sbjct  129  KTLTKAEYVGGMLPLSGDALLSGFYLNELLLRFCPREDAHPTLFRHYMATLTRL----SH  184

Query  119  QQPAIFLKQILRQFEHVLLQELGYAIDFEIDC--NQNQINPLASYQFQPTEGFLPV---S  173
             +PA F   +LR FE VLLQE G+A+ F+  C  +  ++ P   Y +QP  G        
Sbjct  185  GEPASF---VLRSFERVLLQETGFAVAFD-QCLRSGERVQPGLDYVYQPERGVRRTHASD  240

Query  174  QQSHLTVSGQLICCM--QNYQAGQEFSTEQLQLLGKLYRQMITSLLGDRPLKSRQLWI  229
              S   VSGQ +  M   +Y   Q  S  +      L R ++   L   PLK+RQ+ I
Sbjct  241  PSSWPVVSGQTLLDMAQDDYSRAQTVSQSR-----ALMRFLLHYYLQGAPLKTRQILI  293


>B8F3C9 DNA repair protein RecO [Glaesserella parasuis serovar 
5 (strain SH0165)]
Length=239

 Score = 114 bits (286),  Expect = 1e-34
 Identities = 78/232 (34%), Positives = 116/232 (50%), Gaps = 21/232 (9%)

Query  8    GYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGEL  58
            G+++H R Y E S +V  FTE +GRI  + + +  P+         + P+ L+ TGKG+L
Sbjct  8    GFVLHRREYSESSLLVDFFTENHGRITLLAKGVRRPRSPLKSVLQPFTPLLLKWTGKGDL  67

Query  59   KNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQH  118
            K  TK E  +  +     A ++GFY+NEVL R+     A P+ FQ Y   + +L      
Sbjct  68   KTLTKAEPASLTLPMQTLALYSGFYVNEVLARVLENHTAYPELFQHYLHCMTKLASQPNE  127

Query  119  QQPAIFLKQILRQFEHVLLQELGYAIDF-EIDCNQNQINPLASYQFQPTEGFLPVSQQSH  177
             +P      ILR FE   L+ LGY +DF         ++P  SYQF+  EGF+    Q++
Sbjct  128  IEP------ILRTFEFQTLKALGYGVDFCHCAATGKPVDPKMSYQFRENEGFIASLLQNN  181

Query  178  LTVSGQLICCMQNYQAGQEFS-TEQLQLLGKLYRQMITSLLGDRPLKSRQLW  228
             T  G+ +       A  +FS  E LQ   +  R  +   LG  PLKSR+L+
Sbjct  182  YTFIGKDLLAF----AEMDFSEKETLQSAKRFTRIALKPYLGSAPLKSRELF  229


>B0BUA8 DNA repair protein RecO [Actinobacillus pleuropneumoniae 
serotype 3 (strain JL03)]
Length=240

 Score = 114 bits (285),  Expect = 2e-34
 Identities = 74/232 (32%), Positives = 121/232 (52%), Gaps = 21/232 (9%)

Query  8    GYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGEL  58
            G+++H R Y E S +V  FTEE+GRI  + +    P          + P+ L+ +GKG+L
Sbjct  8    GFVLHRREYSETSLLVDFFTEEHGRITLLAKGARRPHSPLKAVLQPFTPLLLRWSGKGDL  67

Query  59   KNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQH  118
            K  TK E  +  +     A ++GFY+NEVL R+   + A P+ FQ Y   + +L    + 
Sbjct  68   KTLTKAEPASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTRLATQPEQ  127

Query  119  QQPAIFLKQILRQFEHVLLQELGYAIDFEI-DCNQNQINPLASYQFQPTEGFLPVSQQSH  177
             +P      ILR FE  +L+ LGY ++F I     + ++P  +YQF+  +GF+    Q++
Sbjct  128  IEP------ILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQNN  181

Query  178  LTVSGQLICCMQNYQAGQEFSTE-QLQLLGKLYRQMITSLLGDRPLKSRQLW  228
             T  G+ +   +      +FS +  LQ   +  R  +   LG +PLKSR+L+
Sbjct  182  YTFLGKDLLAFEQL----DFSDKATLQAAKRFTRMALKPYLGSQPLKSRELF  229


>A3MZR1 DNA repair protein RecO [Actinobacillus pleuropneumoniae 
serotype 5b (strain L20)]
Length=240

 Score = 114 bits (284),  Expect = 2e-34
 Identities = 71/231 (31%), Positives = 120/231 (52%), Gaps = 19/231 (8%)

Query  8    GYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGEL  58
            G+++H R Y E S +V  FTEE+GR+  + +    P+         + P+ L+ +GKG+L
Sbjct  8    GFVLHRREYSETSLLVDFFTEEHGRVTLLAKGARRPRSPLKAVLQPFTPLLLRWSGKGDL  67

Query  59   KNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQH  118
            K  TK E  +  +     A ++GFY+NEVL R+   + A P+ FQ Y   + +L    + 
Sbjct  68   KTLTKAEPASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTRLATQPKQ  127

Query  119  QQPAIFLKQILRQFEHVLLQELGYAIDFEI-DCNQNQINPLASYQFQPTEGFLPVSQQSH  177
             +P      ILR FE  +L+ LGY ++F I     + ++P  +YQF+  +GF+    Q++
Sbjct  128  IEP------ILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFRENQGFIASLLQNN  181

Query  178  LTVSGQLICCMQNYQAGQEFSTEQLQLLGKLYRQMITSLLGDRPLKSRQLW  228
             T  G+ +   +      + +   LQ   +  R  +   LG +PLKSR+L+
Sbjct  182  YTFLGKDLLAFEQLNFSDKAT---LQAAKRFTRMALKPYLGSQPLKSRELF  229


>A6VAK4 DNA repair protein RecO [Pseudomonas aeruginosa (strain 
PA7)]
Length=233

 Score = 113 bits (283),  Expect = 3e-34
 Identities = 79/234 (34%), Positives = 114/234 (49%), Gaps = 21/234 (9%)

Query  9    YLIHHRRYREKSHIVHLFTEEYGRIDGILR-------QIPPPQYQPITLQATGKGELKNF  61
            Y++H R Y+E S +V  FT + GR+  +LR        +  P + P+  +  G+GELK  
Sbjct  10   YVLHSRPYKETSALVDFFTAQ-GRLRAVLRGARGKAGALARP-FVPLEAEWRGRGELKTV  67

Query  62   TKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQHQQP  121
             +LE    P    G A F+G YLNE+L+RL P E+  P+ F  Y   L  L         
Sbjct  68   ARLESAGIPNLLSGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRP----  123

Query  122  AIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLASYQFQPTEGFLPVSQQSHLTVS  181
               L+ +LR FE  LL++LGY    ++D +   I P A YQ  P  G  PV+Q       
Sbjct  124  ---LEPLLRAFEWRLLEQLGYGFALDVDIHGRPIEPQALYQLLPEAGLEPVTQLQPGLFQ  180

Query  182  GQLICCMQNYQAGQEFSTE-QLQLLGKLYRQMITSLLGDRPLKSRQLWIQNTQS  234
            G  +  M    A  ++S    L    +L RQ +   LG RPL SR+L++   +S
Sbjct  181  GVELLSM----ADADWSAPGALAAAKRLMRQALAPHLGGRPLVSRELFMNRKES  230


>Q02HS4 DNA repair protein RecO [Pseudomonas aeruginosa (strain 
UCBPP-PA14)]
Length=233

 Score = 113 bits (282),  Expect = 4e-34
 Identities = 78/234 (33%), Positives = 114/234 (49%), Gaps = 21/234 (9%)

Query  9    YLIHHRRYREKSHIVHLFTEEYGRIDGILR-------QIPPPQYQPITLQATGKGELKNF  61
            Y++H R Y+E S +V  FT   GR+  +LR        +  P + P+  +  G+GELK  
Sbjct  10   YVLHSRPYKETSALVDFFTP-LGRLRAVLRGARGKAGALARP-FVPLEAEWRGRGELKTV  67

Query  62   TKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQHQQP  121
             +LE    P   +G A F+G YLNE+L+RL P E+  P+ F  Y   L  L         
Sbjct  68   ARLESAGIPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRP----  123

Query  122  AIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLASYQFQPTEGFLPVSQQSHLTVS  181
               ++ +LR FE  LL++LGY    ++D +   I P A YQ  P  G  PV+Q       
Sbjct  124  ---IEPLLRAFEWRLLEQLGYGFALDVDIDGRPIEPQALYQLLPEAGLEPVAQLQPGLFQ  180

Query  182  GQLICCMQNYQAGQEFSTE-QLQLLGKLYRQMITSLLGDRPLKSRQLWIQNTQS  234
            G  +  M    A  ++S    L    +L RQ +   LG RPL SR+L++   +S
Sbjct  181  GSELLSM----ADADWSAPGALAAAKRLMRQALAPHLGGRPLVSRELFMNRKES  230


>B7UYX0 DNA repair protein RecO [Pseudomonas aeruginosa (strain 
LESB58)]
Length=233

 Score = 113 bits (282),  Expect = 4e-34
 Identities = 78/234 (33%), Positives = 114/234 (49%), Gaps = 21/234 (9%)

Query  9    YLIHHRRYREKSHIVHLFTEEYGRIDGILR-------QIPPPQYQPITLQATGKGELKNF  61
            Y++H R Y+E S +V  FT   GR+  +LR        +  P + P+  +  G+GELK  
Sbjct  10   YVLHSRPYKETSALVDFFTP-LGRLRAVLRGARGKAGALARP-FVPLEAEWRGRGELKTV  67

Query  62   TKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQHQQP  121
             +LE    P   +G A F+G YLNE+L+RL P E+  P+ F  Y   L  L         
Sbjct  68   ARLESAGVPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRP----  123

Query  122  AIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLASYQFQPTEGFLPVSQQSHLTVS  181
               ++ +LR FE  LL++LGY    ++D +   I P A YQ  P  G  PV+Q       
Sbjct  124  ---IEPLLRAFEWRLLEQLGYGFALDVDIDGRPIEPQALYQLLPEAGLEPVAQLQPGLFQ  180

Query  182  GQLICCMQNYQAGQEFSTE-QLQLLGKLYRQMITSLLGDRPLKSRQLWIQNTQS  234
            G  +  M    A  ++S    L    +L RQ +   LG RPL SR+L++   +S
Sbjct  181  GSELLSM----ADADWSAPGALAAAKRLMRQALAPHLGGRPLVSRELFMNRKES  230


>Q9XCX7 DNA repair protein RecO [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 
/ 1C / PRS 101 / PAO1)]
Length=233

 Score = 113 bits (282),  Expect = 4e-34
 Identities = 78/234 (33%), Positives = 114/234 (49%), Gaps = 21/234 (9%)

Query  9    YLIHHRRYREKSHIVHLFTEEYGRIDGILR-------QIPPPQYQPITLQATGKGELKNF  61
            Y++H R Y+E S +V  FT   GR+  +LR        +  P + P+  +  G+GELK  
Sbjct  10   YVLHSRPYKETSALVDFFTP-LGRLRAVLRGARGKAGALARP-FVPLEAEWRGRGELKTV  67

Query  62   TKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQHQQP  121
             +LE    P   +G A F+G YLNE+L+RL P E+  P+ F  Y   L  L         
Sbjct  68   ARLESAGVPNLLNGQALFSGLYLNELLIRLLPAEDPQPEIFAHYAATLPLLAAGRP----  123

Query  122  AIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLASYQFQPTEGFLPVSQQSHLTVS  181
               ++ +LR FE  LL++LGY    ++D +   I P A YQ  P  G  PV+Q       
Sbjct  124  ---IEPLLRAFEWRLLEQLGYGFALDVDIDGRPIEPQALYQLLPEAGLEPVAQLQPGLFQ  180

Query  182  GQLICCMQNYQAGQEFSTE-QLQLLGKLYRQMITSLLGDRPLKSRQLWIQNTQS  234
            G  +  M    A  ++S    L    +L RQ +   LG RPL SR+L++   +S
Sbjct  181  GSELLSM----ADADWSAPGALAAAKRLMRQALAPHLGGRPLVSRELFMNRKES  230


>B3GX87 DNA repair protein RecO [Actinobacillus pleuropneumoniae 
serotype 7 (strain AP76)]
Length=240

 Score = 112 bits (281),  Expect = 6e-34
 Identities = 73/232 (31%), Positives = 122/232 (53%), Gaps = 21/232 (9%)

Query  8    GYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGEL  58
            G+++H R Y E S +V  FTEE+GRI  + +    P+         + P+ L+ +GKG+L
Sbjct  8    GFVLHRREYSETSLLVDFFTEEHGRITLLAKGARRPRSPLKAVLQPFTPLLLRWSGKGDL  67

Query  59   KNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQH  118
            K  TK E  +  +     A ++GFY+NEVL R+   + A P+ FQ Y   + +L    + 
Sbjct  68   KTLTKAEPASLTLPMQTLALYSGFYVNEVLARVLENQTAYPELFQHYLQCMTRLATQPEQ  127

Query  119  QQPAIFLKQILRQFEHVLLQELGYAIDFEI-DCNQNQINPLASYQFQPTEGFLPVSQQSH  177
             +P      ILR FE  +L+ LGY ++F I     + ++P  +YQF+  EGF+    +++
Sbjct  128  IEP------ILRTFEFQMLKALGYGVNFSICAATGDPVSPSMTYQFKENEGFIASLLRNN  181

Query  178  LTVSGQLICCMQNYQAGQEFSTE-QLQLLGKLYRQMITSLLGDRPLKSRQLW  228
             +  G+ +   +      +FS +  LQ   +  R  +   LG +PLKSR+L+
Sbjct  182  ASFLGKDLLAFEQL----DFSDKATLQAAKRFTRMALKPYLGSQPLKSRELF  229


>B3PL65 DNA repair protein RecO [Cellvibrio japonicus (strain 
Ueda107)]
Length=236

 Score = 111 bits (277),  Expect = 2e-33
 Identities = 77/242 (32%), Positives = 127/242 (52%), Gaps = 26/242 (11%)

Query  1    MRNEVLHGYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQ  51
            MR ++   Y++H R YR+ S ++ L T  YGRI  + R +   +         +  + + 
Sbjct  1    MRVDLQPAYILHARPYRDTSLLLDLLTPVYGRITAVARGVRQSKGHKRQLLNPFHRLLVN  60

Query  52   ATGKGELKNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQ  111
              GK ELK  T +E  ++ +   G+A ++GFYLNE+L+RL P ++ +   F++Y+  L  
Sbjct  61   WQGKSELKLITGVETDHHYLQLQGNALYSGFYLNELLVRLLPEQDVITGLFERYEWTLDA  120

Query  112  LQLLNQHQQPAIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLAS---YQFQPTEG  168
            L       +P   L+ +LR+FE +LLQ LGYA+DF  DC+  Q  P+ S   Y     +G
Sbjct  121  L----HRGEP---LEPLLREFEFMLLQGLGYALDFLHDCHSQQ--PIQSGYFYLCDIHQG  171

Query  169  F--LPVSQQSHLTVSGQLICCMQNYQAGQEFSTEQLQLLGKLYRQMITSLLGDRPLKSRQ  226
            F  +P        ++G  +  +    AG   + +  ++  +L R +   LLG RPLKSR+
Sbjct  172  FYSVPADSDPRFWIAGAHLLAI---AAGDYSAADTRRVAKQLARLLFKPLLGKRPLKSRE  228

Query  227  LW  228
            L+
Sbjct  229  LF  230


>Q7VL77 DNA repair protein RecO [Haemophilus ducreyi (strain 35000HP 
/ ATCC 700724)]
Length=240

 Score = 110 bits (274),  Expect = 6e-33
 Identities = 76/232 (33%), Positives = 117/232 (50%), Gaps = 21/232 (9%)

Query  8    GYLIHHRRYREKSHIVHLFTEEYGRIDGI----------LRQIPPPQYQPITLQATGKGE  57
            G+++H R YRE S +V  FTE++GRI  +          L+ +  P + P+ L+ +GKG+
Sbjct  8    GFVLHRREYRETSLLVDFFTEQHGRITLLAKGAKRVRSPLKAVLQP-FTPLLLRWSGKGD  66

Query  58   LKNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQ  117
            LK  TK E     +  H  A ++G Y+NE+L+R+   + A    FQ Y      LQ + Q
Sbjct  67   LKVLTKAEPAALTLPMHHTALYSGLYVNEILIRVLENQTAYTALFQHY------LQCITQ  120

Query  118  HQQPAIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQ-INPLASYQFQPTEGFLPVSQQS  176
                   L+  LR FE  LL+ LGY ++F I     Q I+    YQF   +GF     ++
Sbjct  121  LATQPEKLQVTLRTFEFHLLKALGYGVNFSICAATGQPIDAGMYYQFSENKGFFASLLRN  180

Query  177  HLTVSGQLICCMQNYQAGQEFSTEQLQLLGKLYRQMITSLLGDRPLKSRQLW  228
            H T  G+ +     ++ G    T+ LQ   +  R  +   LG +PLKSR+L+
Sbjct  181  HYTFCGKDLLA---FEKGDFSDTDTLQAAKRFTRIALRPYLGSQPLKSRELF  229


>Q3IDL0 DNA repair protein RecO [Pseudoalteromonas translucida 
(strain TAC 125)]
Length=230

 Score = 108 bits (271),  Expect = 1e-32
 Identities = 71/239 (30%), Positives = 115/239 (48%), Gaps = 24/239 (10%)

Query  1    MRNEVLHGYLIHHRRYREKSHIVHLFTEEYGRIDGILR-----------QIPPPQYQPIT  49
            M ++    YL+H R Y +   ++ +  E  G++  + R           Q+ P  +Q + 
Sbjct  1    MDSDFYRAYLLHRRPYSDSQVMLDMLVEGVGQLRMLARISGRQATKHKAQLQP--FQALL  58

Query  50   LQATGKGELKNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIIL  109
            +   GK +LK   K E+   P+F  GD  + GFYLNE+  R+ P+ E + Q FQ Y   L
Sbjct  59   VHYNGKYDLKYINKFELHGTPLFLKGDELYCGFYLNELTNRIVPINEPIDQVFQLYNTHL  118

Query  110  QQLQLLNQHQQPAIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLASYQFQPTEGF  169
            + L            L+ +LR +E  LL+ LGY +DF  D +   I+   +Y +    GF
Sbjct  119  KNL-------NSGANLQAVLRSYEFQLLELLGYGVDFSFDASGEPIDEKRTYSYFAEVGF  171

Query  170  LPVSQQSHLTVSGQLICCMQNYQAGQEFSTEQLQLLGKLYRQMITSLLGDRPLKSRQLW  228
            L V        SG  +  + N+   Q    + L +  +L R ++  LLG++PLKSR+L+
Sbjct  172  L-VQDDPRSGFSGLQLNAIANHDFSQ---ADVLYMAKQLSRYLLKPLLGNKPLKSRELF  226


>P44642 DNA repair protein RecO [Haemophilus influenzae (strain 
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=236

 Score = 104 bits (259),  Expect = 9e-31
 Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 24/243 (10%)

Query  1    MRNEVLHGYLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQ  51
            M++E+  G+++H R Y E S +V LFTEE GR+  I +     +         + P+ L+
Sbjct  1    MQSELQRGFVLHRRPYSETSLLVDLFTEESGRLTVIAKGARAKRSSWKSVLQPFTPLLLR  60

Query  52   ATGKGELKNFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQ  111
             TGK  LK  TK E     +     A ++GFY+NE+L R+   E   P  FQ Y   L  
Sbjct  61   WTGKSTLKTLTKAEPAAITLPLQQIALYSGFYVNELLTRVIESETPNPALFQHYLKCLTG  120

Query  112  LQLLNQHQQPAIFLKQILRQFEHVLLQELGYAIDFEIDC--NQNQINPLASYQFQPTEGF  169
            L            ++  LR FE  LLQ LGY +DF + C  +   ++   +Y+++  +GF
Sbjct  121  LATETN-------IEPTLRLFEFQLLQILGYGVDF-LHCAGSGEPVDFSMTYRYREEKGF  172

Query  170  LPVSQQSHLTVSGQLICCMQNYQAGQEFSTEQLQLLGKLY-RQMITSLLGDRPLKSRQLW  228
            +    + +LT  G+ +   +      +FS + ++   K + R  +   LGD+PLKSR+L+
Sbjct  173  IASLVKDNLTFYGRDLLAFE----ALDFSDDAVRQAAKRFTRIALKPYLGDKPLKSRELF  228

Query  229  IQN  231
             QN
Sbjct  229  TQN  231


>P51838 DNA repair protein RecO [Coxiella burnetii (strain RSA 
493 / Nine Mile phase I)]
Length=231

 Score = 95.5 bits (236),  Expect = 2e-27
 Identities = 68/230 (30%), Positives = 108/230 (47%), Gaps = 22/230 (10%)

Query  9    YLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGELK  59
            +++H R Y   S I+ L T  +GR+  + R     +         + P+ +  +G+ +LK
Sbjct  11   FILHRRPYSNTSLILELLTPNHGRVCALARSARGLKSRYKGKLELFSPLLISWSGRSDLK  70

Query  60   NFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQHQ  119
                +E    P    G+A   GFYLNE+L+RL   ++   + F  YQ  L+  +L+N   
Sbjct  71   FLGDVEANGMPYLLEGEALLCGFYLNELLIRLLHHDDPYLRLFHHYQNTLE--KLVNGR-  127

Query  120  QPAIFLKQILRQFEHVLLQELGYAIDFEIDCNQN-QINPLASYQFQPTEGFLPVSQQSHL  178
                 L+  LR FE  LL ELGY +    D        P   YQ+ P  GFL   +    
Sbjct  128  -----LEATLRCFEKQLLDELGYGLPLSCDVEMKLPFKPDQFYQYLPDRGFLLCEKSEER  182

Query  179  TV-SGQLICCMQNYQAGQEFSTEQLQLLGKLYRQMITSLLGDRPLKSRQL  227
             V SG+ +  +Q      E S ++++ L +L    +  LLG +PLK+R+L
Sbjct  183  DVFSGKSLLALQEESFSDESSLKEIKYLMRL---TLNRLLGKKPLKTREL  229


>P0A285 DNA repair protein RecO [Salmonella typhimurium (strain 
LT2 / SGSC1412 / ATCC 700720)]
Length=242

 Score = 82.4 bits (202),  Expect = 2e-22
 Identities = 59/233 (25%), Positives = 112/233 (48%), Gaps = 21/233 (9%)

Query  9    YLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGELK  59
            +++H R + E S ++ +FTEE GR+  + +     +         + P+ L+ +G+GE+K
Sbjct  8    FVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSNLKGALQPFTPLLLRYSGRGEVK  67

Query  60   NFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQHQ  119
                 E ++  +   G   ++G Y+NE+L R+   E    + F  Y   +Q L       
Sbjct  68   TLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLNCIQALAGTTGSP  127

Query  120  QPAIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQ-INPLASYQFQPTEGFLPVSQQSHL  178
            +PA      LR+FE  LL  LGY ++F       + ++   +Y+++  +GF       + 
Sbjct  128  EPA------LRRFELALLGHLGYGVNFTHCAGSGERVDDTMTYRYREEKGFFASVVIDNN  181

Query  179  TVSGQLICCMQNYQAGQEF-STEQLQLLGKLYRQMITSLLGDRPLKSRQLWIQ  230
            T +G+ +  ++     +EF   + L+   +  R  +   LG +PLKSR+L+ Q
Sbjct  182  TFTGRHLKALE----AREFPDVDTLRAAKRFTRMALKPYLGGKPLKSRELFRQ  230


>Q9ZHY2 DNA repair protein RecO [Neisseria gonorrhoeae (strain 
ATCC 700825 / FA 1090)]
Length=247

 Score = 67.0 bits (162),  Expect = 8e-17
 Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 27/241 (11%)

Query  9    YLIHHRRYREKSHIVHLFTEEYGRIDGILRQIPPPQ---------YQPITLQATGKGELK  59
            +++    +RE S  V  F+  YGR+  + R     Q         + P ++   G  ELK
Sbjct  12   FMLASSPWRESSLRVEAFSRRYGRVALLARSARKRQSELRGVLVPFVPASVSWYGSQELK  71

Query  60   NFTKLEIMNYPVFFHGDAFFAGFYLNEVLLRLCPLEEAMPQTFQQYQIILQQLQLLNQHQ  119
               + E M       G A F+G Y+NE++L+L   E+ M + +     +++ +     H 
Sbjct  72   TLHRAEWMGGWRQPQGRALFSGLYVNELVLKLTAREDPMSELYDALAKVMEAVCREANHI  131

Query  120  QPAIFLKQILRQFEHVLLQELGYAIDFEIDCNQNQINPLASYQFQPTEGFLPV-------  172
                     LR+FE  LL  LG A D   D     I    +Y+  P E  +PV       
Sbjct  132  AD-------LRRFEWKLLNALGVAPDLHADGTGGDILADKTYRLMPEEAVMPVCRDTGAL  184

Query  173  SQQSHLTVSGQLICCMQNYQAGQEFSTEQLQLLGKLYRQMITSLLGDRPLKSRQLWIQNT  232
            S ++   V GQ +    + + G   + E LQ   K+ R +I +LL +  LKSRQ+  Q  
Sbjct  185  SHEAGAIVEGQSLI---DLREGSFRTAESLQQALKITRLLIGTLLPE-GLKSRQVLEQIR  240

Query  233  Q  233
            Q
Sbjct  241  Q  241



Lambda      K        H        a         alpha
   0.327    0.141    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 619905


  Database: 8700300747f9cc1844d2287d741340f8.SwissProt.fasta
    Posted date:  May 30, 2024  10:44 AM
  Number of letters in database: 3,851
  Number of sequences in database:  16



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40