Comparative Genomics

ACIAD2597 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: b69049a1becd18c58ccc5fd111ec4760.SwissProt.fasta
           15 sequences; 4,530 total letters



Query= ACIAD2597

Length=308
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

B4E8S9 HTH-type transcriptional regulator SsuR [Burkholderia ceno...  341     2e-121
Q08598 HTH-type transcriptional regulator cbl [Klebsiella aerogenes]  330     7e-117
Q47083 HTH-type transcriptional regulator cbl [Escherichia coli (...  328     6e-116
B4E8V9 HTH-type transcriptional regulator CysB [Burkholderia ceno...  319     1e-112
P06614 HTH-type transcriptional regulator CysB [Salmonella typhim...  256     1e-87 
P45600 HTH-type transcriptional regulator CysB [Klebsiella pneumo...  254     4e-87 
P0A9F4 HTH-type transcriptional regulator CysB [Escherichia coli ...  253     2e-86 
P0A9F5 HTH-type transcriptional regulator CysB [Escherichia coli ...  253     2e-86 
P0A9F3 HTH-type transcriptional regulator CysB [Escherichia coli ...  253     2e-86 
P45105 HTH-type transcriptional regulator CysB [Haemophilus influ...  251     1e-85 
A0T0G2 Probable RuBisCO transcriptional regulator [Phaeodactylum ...  116     6e-34 
P96725 Uncharacterized HTH-type transcriptional regulator YwqM [B...  107     1e-30 
P52675 HTH-type transcriptional regulator CysB [Thiocapsa roseope...  101     7e-30 
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ...  105     1e-29 
P39647 HTH-type transcriptional regulator CysL [Bacillus subtilis...  93.2    2e-25 


>B4E8S9 HTH-type transcriptional regulator SsuR [Burkholderia 
cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 
13227 / J2315 / CF5610)]
Length=308

 Score = 341 bits (875),  Expect = 2e-121
 Identities = 167/300 (56%), Positives = 218/300 (73%), Gaps = 1/300 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            MNFQQLR +RE VRQN NLTE +  LYTSQSGVSK IKDLEDELGV +FIR+GKRL GLT
Sbjct  1    MNFQQLRFVREAVRQNMNLTEVANVLYTSQSGVSKQIKDLEDELGVDIFIRRGKRLTGLT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
            EPG+++  ++ERML+DAEN++R+A  F   D G L +ATTHTQARY LP ++ QF  +FP
Sbjct  61   EPGKAVHQLIERMLLDAENLRRVARQFADQDSGHLVVATTHTQARYALPKVIRQFTDVFP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            KVHL L+Q SP +I++M+L GEAD+GI+TE+L    ++ + P Y W H+++ P+ HPL  
Sbjct  121  KVHLALRQGSPQQIAQMILNGEADLGISTEALDRYPDIVTFPCYSWHHTVVVPKGHPLVG  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
               +TLE +A YPIITY   FTGRS ID+AF  AG   D+V++A+DADVIKTYVEL MG+
Sbjct  181  RENLTLEEIAEYPIITYDQDFTGRSHIDQAFTQAGAVPDVVLTAIDADVIKTYVELGMGI  240

Query  241  GIVNDVAYDKERDYRLNQIKT-GIFGLNTTWIAVRKGHLLRGYGYEFISLCSPEANIKEL  299
            G+V  +AYD +RD  L  + T  +F  +TT + +RKG  LR Y Y  I + +P  N  E+
Sbjct  241  GVVAAMAYDPQRDTGLVALDTQHLFEASTTRVGLRKGAFLRAYAYRLIEMFAPHLNEAEI  300


>Q08598 HTH-type transcriptional regulator cbl [Klebsiella aerogenes]
Length=316

 Score = 330 bits (846),  Expect = 7e-117
 Identities = 162/309 (52%), Positives = 227/309 (73%), Gaps = 2/309 (1%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            MNFQQL+IIRE  RQ++NLTE +  LYTSQSGVS+HI++LE+ELG+++FIR+GKRLLG+T
Sbjct  1    MNFQQLKIIREAARQDYNLTEVANMLYTSQSGVSRHIRELEEELGIEIFIRRGKRLLGMT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
            EPG++LL I ER+L +A N++RLAD F     G LTIATTHTQARY LPP++  F++LF 
Sbjct  61   EPGKALLSIAERILNEASNVRRLADLFTNDASGVLTIATTHTQARYSLPPVIKAFRELFS  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
             V + L Q +P EI  +L  G ADIGIA+E L+ +  LA+ P+++W HS++ P++HPLTQ
Sbjct  121  DVRVELVQGTPQEIEALLHNGGADIGIASERLSNDPTLAAFPWFRWHHSLLVPKDHPLTQ  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
            V  +TLE +A +P+ITY  G TGRS+ID+AF+  G+  DIV+SA D+DVIKTYVEL +GV
Sbjct  181  VSPLTLEAIARWPLITYRQGITGRSRIDEAFNRKGLMPDIVLSAQDSDVIKTYVELGLGV  240

Query  241  GIVNDVAYDKERDYRLNQIKT-GIFGLNTTWIAVRKGHLLRGYGYEFISLCSPEANIKEL  299
            G+V + + D        ++ T  +F  NT W+ +++G L R Y + FI LC+   ++ E+
Sbjct  241  GLVAEQSGDAREADTFTRLDTRHLFDANTVWLGLKRGQLQRNYVWRFIELCNAGLSLDEI  300

Query  300  KKIAY-PED  307
            K+ A  PE+
Sbjct  301  KRQAMEPEE  309


>Q47083 HTH-type transcriptional regulator cbl [Escherichia coli 
(strain K12)]
Length=316

 Score = 328 bits (840),  Expect = 6e-116
 Identities = 154/302 (51%), Positives = 226/302 (75%), Gaps = 1/302 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            MNFQQL+IIRE  RQ++NLTE +  L+TSQSGVS+HI++LEDELG+++F+R+GKRLLG+T
Sbjct  1    MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDELGIEIFVRRGKRLLGMT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
            EPG++LL I ER+L +A N++RLAD F     G LTIATTHTQARY LP ++  F++LFP
Sbjct  61   EPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHTQARYSLPEVIKAFRELFP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            +V L L Q +P EI+ +L  GEADIGIA+E L+ +  L + P+++W HS++ P +HPLTQ
Sbjct  121  EVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVAFPWFRWHHSLLVPHDHPLTQ  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
            +  +TLE++A +P+ITY  G TGRS+ID AF   G+  DIV+SA D+DVIKTYV L +G+
Sbjct  181  ISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDSDVIKTYVALGLGI  240

Query  241  GIVNDVAYDKERDYRLNQIKT-GIFGLNTTWIAVRKGHLLRGYGYEFISLCSPEANIKEL  299
            G+V + +  ++ +  L ++ T  +F  NT W+ +++G L R Y + F+ LC+   +++++
Sbjct  241  GLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNAGLSVEDI  300

Query  300  KK  301
            K+
Sbjct  301  KR  302


>B4E8V9 HTH-type transcriptional regulator CysB [Burkholderia 
cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 
13227 / J2315 / CF5610)]
Length=313

 Score = 319 bits (818),  Expect = 1e-112
 Identities = 158/302 (52%), Positives = 214/302 (71%), Gaps = 1/302 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            MN  Q R +RE VRQNFNLTEA+ ALYTSQ GVSK I +LEDELGV++F R GKR+  LT
Sbjct  1    MNLHQFRFVREAVRQNFNLTEAAKALYTSQPGVSKAIIELEDELGVEIFTRHGKRVRSLT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
            EPG+ +L  VER+L + E++KR+  D+   D+G LTIA THTQARY LP  + +FKK FP
Sbjct  61   EPGRIILASVERILQEVESLKRVGKDYAAQDQGNLTIAATHTQARYSLPAAIAEFKKRFP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            KVHL + Q SPT+++EM++  +AD+ IATE+++  + L S+P +QW H+ + P +HPL +
Sbjct  121  KVHLSILQGSPTQVAEMVIHDQADLAIATEAISDYKELVSLPCFQWHHAAVVPADHPLLE  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
               +TL+ LA YP+ITY   F GR KI+ AF   G+  DIV+ A+DADVIKTYVEL +GV
Sbjct  181  RKPVTLDDLAQYPLITYDDAFAGRKKINHAFALRGLSPDIVLEAIDADVIKTYVELGLGV  240

Query  241  GIVNDVAYDKERDYRLNQIKTG-IFGLNTTWIAVRKGHLLRGYGYEFISLCSPEANIKEL  299
            GI+ D+A++ ERD  L  I  G +FG N T +A+++G  LR Y Y  + L SP  N K +
Sbjct  241  GIMADIAFNPERDRGLRLIPVGHLFGSNVTRVALKQGAYLRSYVYTLVELLSPTLNRKLI  300

Query  300  KK  301
            ++
Sbjct  301  EQ  302


 Score = 20.8 bits (42),  Expect = 0.54
 Identities = 16/57 (28%), Positives = 25/57 (44%), Gaps = 3/57 (5%)

Query  91   DEGTLTIATTHTQARYVLPPIVNQFKKLFPKVHLILQQASPT---EISEMLLQGEAD  144
            D G   I   H     V    + Q   L   V+ +++  SPT   ++ E  L+GEA+
Sbjct  253  DRGLRLIPVGHLFGSNVTRVALKQGAYLRSYVYTLVELLSPTLNRKLIEQALKGEAE  309


>P06614 HTH-type transcriptional regulator CysB [Salmonella typhimurium 
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=324

 Score = 256 bits (654),  Expect = 1e-87
 Identities = 133/293 (45%), Positives = 184/293 (63%), Gaps = 1/293 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            M  QQLR I E V  N N++  +  LYTSQ G+SK ++ LEDELG+Q+F R GK L  +T
Sbjct  1    MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
              GQ ++ I   +L   + IK +A +    D+G+L IATTHTQARY LP ++  F + +P
Sbjct  61   PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPGVIKGFIERYP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            +V L + Q SPT+I+E + +G AD  IATE+L   ++L  +P Y W  SI+   +HPL  
Sbjct  121  RVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPDHPLAA  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
               +T+E LA YP++TY  GFTGRS++D AF+ AG+   IV +A DADVIKTYV L +GV
Sbjct  181  TSSVTIEALAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV  240

Query  241  GIVNDVAYDKERDYRLNQIKT-GIFGLNTTWIAVRKGHLLRGYGYEFISLCSP  292
            G++  +A D   D  L +I    IF  +TT I  R+   LR Y Y+FI   +P
Sbjct  241  GVIASMAVDPLADPDLVRIDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAP  293


>P45600 HTH-type transcriptional regulator CysB [Klebsiella pneumoniae]
Length=324

 Score = 254 bits (650),  Expect = 4e-87
 Identities = 131/293 (45%), Positives = 184/293 (63%), Gaps = 1/293 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            M  QQLR I E V  N N++  +  LYTSQ G+SK ++ LEDELG+Q+F R GK L  +T
Sbjct  1    MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
              GQ ++ I   +L   + IK +A +    D+G+L +ATTHTQARY LP ++  F + +P
Sbjct  61   PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYVATTHTQARYALPGVIKGFIERYP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            +V L + Q SPT+I+E + +G AD  IATE+L   ++L  +P Y W  SI+    HPL  
Sbjct  121  RVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLAT  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
               +++E LA YP++TY  GFTGRS++D AF+ AG+   IV +A DADVIKTYV L +GV
Sbjct  181  KGSVSIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV  240

Query  241  GIVNDVAYDKERDYRLNQI-KTGIFGLNTTWIAVRKGHLLRGYGYEFISLCSP  292
            G++  +A D   D  L ++   GIF  +TT I  R+   LR Y Y+FI   +P
Sbjct  241  GVIASMAVDPVSDPDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAP  293


>P0A9F4 HTH-type transcriptional regulator CysB [Escherichia coli 
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=324

 Score = 253 bits (646),  Expect = 2e-86
 Identities = 132/293 (45%), Positives = 184/293 (63%), Gaps = 1/293 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            M  QQLR I E V  N N++  +  LYTSQ G+SK ++ LEDELG+Q+F R GK L  +T
Sbjct  1    MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
              GQ ++ I   +L   + IK +A +    D+G+L IATTHTQARY LP ++  F + +P
Sbjct  61   PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            +V L + Q SPT+I++ + +G AD  IATE+L   E+L  +P Y W  +I+   +HPL  
Sbjct  121  RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
               IT+E LA YP++TY  GFTGRS++D AF+ AG+   IV +A DADVIKTYV L +GV
Sbjct  181  KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV  240

Query  241  GIVNDVAYDKERDYRLNQIKT-GIFGLNTTWIAVRKGHLLRGYGYEFISLCSP  292
            G++  +A D   D  L ++    IF  +TT I  R+   LR Y Y+FI   +P
Sbjct  241  GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAP  293


>P0A9F5 HTH-type transcriptional regulator CysB [Escherichia coli 
O157:H7]
Length=324

 Score = 253 bits (646),  Expect = 2e-86
 Identities = 132/293 (45%), Positives = 184/293 (63%), Gaps = 1/293 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            M  QQLR I E V  N N++  +  LYTSQ G+SK ++ LEDELG+Q+F R GK L  +T
Sbjct  1    MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
              GQ ++ I   +L   + IK +A +    D+G+L IATTHTQARY LP ++  F + +P
Sbjct  61   PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            +V L + Q SPT+I++ + +G AD  IATE+L   E+L  +P Y W  +I+   +HPL  
Sbjct  121  RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
               IT+E LA YP++TY  GFTGRS++D AF+ AG+   IV +A DADVIKTYV L +GV
Sbjct  181  KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV  240

Query  241  GIVNDVAYDKERDYRLNQIKT-GIFGLNTTWIAVRKGHLLRGYGYEFISLCSP  292
            G++  +A D   D  L ++    IF  +TT I  R+   LR Y Y+FI   +P
Sbjct  241  GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAP  293


>P0A9F3 HTH-type transcriptional regulator CysB [Escherichia coli 
(strain K12)]
Length=324

 Score = 253 bits (646),  Expect = 2e-86
 Identities = 132/293 (45%), Positives = 184/293 (63%), Gaps = 1/293 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            M  QQLR I E V  N N++  +  LYTSQ G+SK ++ LEDELG+Q+F R GK L  +T
Sbjct  1    MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFSRSGKHLTQVT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
              GQ ++ I   +L   + IK +A +    D+G+L IATTHTQARY LP ++  F + +P
Sbjct  61   PAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
            +V L + Q SPT+I++ + +G AD  IATE+L   E+L  +P Y W  +I+   +HPL  
Sbjct  121  RVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVMLPCYHWNRAIVVTPDHPLAG  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
               IT+E LA YP++TY  GFTGRS++D AF+ AG+   IV +A DADVIKTYV L +GV
Sbjct  181  KKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGV  240

Query  241  GIVNDVAYDKERDYRLNQIKT-GIFGLNTTWIAVRKGHLLRGYGYEFISLCSP  292
            G++  +A D   D  L ++    IF  +TT I  R+   LR Y Y+FI   +P
Sbjct  241  GVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAP  293


>P45105 HTH-type transcriptional regulator CysB [Haemophilus influenzae 
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=323

 Score = 251 bits (640),  Expect = 1e-85
 Identities = 130/301 (43%), Positives = 189/301 (63%), Gaps = 0/301 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            M   QLR I E V QN N+TEA+ ALYTSQ G+SK ++ LEDELG+++F R GK +  +T
Sbjct  1    MKMHQLRYIVEIVNQNLNVTEAANALYTSQPGISKQVRLLEDELGLEIFERHGKHIKSIT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
              G+ ++ I   +LV A+ I+ +AD++ + + G L IATT+TQARY+LP ++ +F K +P
Sbjct  61   PAGKKIISIARELLVKAQGIRAVADEYTRPNHGVLRIATTNTQARYMLPSVIERFSKKYP  120

Query  121  KVHLILQQASPTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQ  180
             V L + Q SPT+I + L+ GE D+ I TE+    ++L  IP Y W  ++I    HPL +
Sbjct  121  DVSLHIHQGSPTQIHDALMSGEVDLAITTEAPYLFDDLVQIPCYWWNRAVIVSPEHPLAK  180

Query  181  VPEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGV  240
            V E+T+E L  YP++TY  GFTG S +D AF+ AGI  +IV +A DADVIKTYV L +GV
Sbjct  181  VKELTIEELGKYPLVTYTFGFTGVSDLDYAFNSAGILPNIVFTATDADVIKTYVRLGLGV  240

Query  241  GIVNDVAYDKERDYRLNQIKTGIFGLNTTWIAVRKGHLLRGYGYEFISLCSPEANIKELK  300
            GI+  +A+       +    + +F  + T IA +    LR Y Y+F+   SP      ++
Sbjct  241  GIMASMAHTALDTDLVLIDASHLFRPSMTNIAFKHSTFLRNYMYDFMEYFSPHLTRSVVE  300

Query  301  K  301
            K
Sbjct  301  K  301


>A0T0G2 Probable RuBisCO transcriptional regulator [Phaeodactylum 
tricornutum (strain CCAP 1055/1)]
Length=307

 Score = 116 bits (291),  Expect = 6e-34
 Identities = 89/305 (29%), Positives = 142/305 (47%), Gaps = 16/305 (5%)

Query  4    QQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLTEPG  63
            QQLRI++    +  N T+A+  LY SQ  +SK IK LE  L + L  R+  ++  LTE G
Sbjct  7    QQLRILKAVATEK-NFTKAAELLYLSQPSLSKQIKTLEKNLDILLVNRENNKI-SLTENG  64

Query  64   QSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFPKVH  123
            +  L   ER+L   E   R   D    + G+LT+  + T   Y++P ++  F + +P++ 
Sbjct  65   KIFLQYSERILALCEESCRALIDLKNGERGSLTVGASQTIGTYLMPRVLALFAQNYPQID  124

Query  124  LILQQASPTEISEMLLQGEADIGIATES--LTTEENLASIPYYQWEHSIITPQNHPLTQV  181
            L +Q  S   +++ +L  E DI +      L  ++NL    + + E S+I P++HP    
Sbjct  125  LKVQVNSTRIVAKNILNREIDIAVVGGEIPLDLKKNLTVEKFVEDEFSLIIPKSHPFANK  184

Query  182  PEITLETLAHYPIITYHGGFTGRSKIDKAFDDAGID---VDIVMSALDADVIKTYVELNM  238
              +T E L H   I+ +   T R  ID       ID   + I+M     + IKT V L  
Sbjct  185  KIVTKEDLYHLNFISLNSNSTIRKFIDNILIQNQIDTKQLKIIMQLNSIEAIKTAVSLGQ  244

Query  239  GVGIVNDVAYDKERDYRLNQI-KTGIFGLNTTWIAVRKGHLLRGYGYEFISLCSPEANIK  297
            G   V+  A +KE + +  +I K     +  T   +      +   +EF S         
Sbjct  245  GAAFVSSAAIEKEIELKTIEILKIENIRITRTLSIISNSESYKSKAFEFFS--------N  296

Query  298  ELKKI  302
            ELKK+
Sbjct  297  ELKKL  301


>P96725 Uncharacterized HTH-type transcriptional regulator YwqM 
[Bacillus subtilis (strain 168)]
Length=293

 Score = 107 bits (267),  Expect = 1e-30
 Identities = 72/236 (31%), Positives = 119/236 (50%), Gaps = 4/236 (2%)

Query  12   TVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLTEPGQSLLGIVE  71
            T  ++ N T  +  L  +QS V+  IK LE+E+G  LF R GKRL+ LTE G++     +
Sbjct  11   TAAEHVNFTLTAKMLNYAQSSVTSQIKSLEEEIGTPLFERLGKRLI-LTEAGKTFKSYAQ  69

Query  72   RMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFPKVHLILQ-QAS  130
            +++   E  K   +   +   GTL I  T +Q  Y LPPI+ +FK+ FP+V LI +   S
Sbjct  70   KIIALTEEAKMATNQVRETT-GTLKIGATESQCTYRLPPIIKEFKQAFPQVKLIFKPYIS  128

Query  131  PTEISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQVPEITLETLA  190
              +  E LLQG+ DI    +    E+ L      Q E  ++   +HP      +TL+ L 
Sbjct  129  NEQAKEQLLQGQLDITFILDVNRMEDALHVESLIQDEIKMVAANDHPFPADLPVTLKDLQ  188

Query  191  HYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGVGIVNDV  246
            +  ++    G + R+  +    D+GI  +  +  +  + IK  V   +G+GI+ ++
Sbjct  189  NETLLLTEDGCSYRTLFENNLHDSGIYPN-KLEFVSIEAIKQCVMAGLGIGILPEM  243


>P52675 HTH-type transcriptional regulator CysB [Thiocapsa roseopersicina]
Length=136

 Score = 101 bits (251),  Expect = 7e-30
 Identities = 51/134 (38%), Positives = 81/134 (60%), Gaps = 0/134 (0%)

Query  1    MNFQQLRIIRETVRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLT  60
            M+ +QLR +   V   F+++ A+  L+  QS V++H+K LE ELG +LF+R GKRL+GLT
Sbjct  1    MDVRQLRSLVTLVEVRFSVSRAAECLHLVQSAVTQHLKQLEAELGTRLFVRHGKRLVGLT  60

Query  61   EPGQSLLGIVERMLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFP  120
            E G+ +L      L    NI  +  +  + +   + +  THTQARYVLPP++ +F   +P
Sbjct  61   EVGEQVLRHACEALRQTGNIVAVGREHLEEERRRIRLGATHTQARYVLPPVIRRFAAAYP  120

Query  121  KVHLILQQASPTEI  134
             V L + Q +P ++
Sbjct  121  AVELQIHQGTPGQL  134


>P27111 HTH-type transcriptional regulator CynR [Escherichia coli 
(strain K12)]
Length=299

 Score = 105 bits (261),  Expect = 1e-29
 Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 5/224 (2%)

Query  13   VRQNFNLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLTEPGQSLLGIVER  72
            V ++ + T A++AL+ SQ  +S+ I+ LE+ LGV LF R G R + LT+ G+       R
Sbjct  12   VAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSG-RTIRLTDAGEVWRQYASR  70

Query  73   MLVDAENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFPKVHLILQQASPT  132
             L +    KR   D   +  G+L IA T T   Y + P++  F   +P + L LQ+ S  
Sbjct  71   ALQELGAGKRAIHDVADLTRGSLRIAVTPTFTSYFIGPLMADFYARYPSITLQLQEMSQE  130

Query  133  EISEMLLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQVPEITLETLAHY  192
            +I +ML + E D+GIA   + + E L +IP      +++  Q+HPL    ++ L  L   
Sbjct  131  KIEDMLCRDELDVGIAFAPVHSPE-LEAIPLLTESLALVVAQHHPLAVHEQVALSRLHDE  189

Query  193  PIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVEL  236
             ++     F  R +ID   + AG+   +V   ++A+ I   +EL
Sbjct  190  KLVLLSAEFATREQIDHYCEKAGLHPQVV---IEANSISAVLEL  230


 Score = 17.7 bits (34),  Expect = 5.0
 Identities = 12/54 (22%), Positives = 22/54 (41%), Gaps = 0/54 (0%)

Query  190  AHYPIITYHGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGVGIV  243
            A YP IT       + KI+       +DV I  + + +  ++    L   + +V
Sbjct  115  ARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALV  168


>P39647 HTH-type transcriptional regulator CysL [Bacillus subtilis 
(strain 168)]
Length=299

 Score = 93.2 bits (230),  Expect = 2e-25
 Identities = 69/238 (29%), Positives = 109/238 (46%), Gaps = 2/238 (1%)

Query  18   NLTEASAALYTSQSGVSKHIKDLEDELGVQLFIRKGKRLLGLTEPGQSLLGIVERMLVDA  77
            N T+A+  L  SQ  VS HIK+LE E    L  R  K     T  G  L    ++M+   
Sbjct  17   NFTKAAEKLMISQPSVSLHIKNLEKEFQTALLNRSPKHFT-TTPTGDILYQRAKQMVFLY  75

Query  78   ENIKRLADDFNKVDEGTLTIATTHTQARYVLPPIVNQFKKLFPKVHLILQQASPTEISEM  137
            E  K      +   +G L IA + T   Y+LPP++ Q +KL+P+++L +   +  E+SE 
Sbjct  76   EQAKAEIYAHHHYVKGELKIAASFTIGEYILPPLLAQLQKLYPELNLDVMIGNTEEVSER  135

Query  138  LLQGEADIGIATESLTTEENLASIPYYQWEHSIITPQNHPLTQVPEITLETLAHYPIITY  197
            +   +ADIG+  E  T E  L   P+ + E  I  P  HPL    EI++  L +   +T 
Sbjct  136  VRMLQADIGL-IEGHTNENELEIEPFMEDEMCIAAPNQHPLAGRKEISISDLQNEAWVTR  194

Query  198  HGGFTGRSKIDKAFDDAGIDVDIVMSALDADVIKTYVELNMGVGIVNDVAYDKERDYR  255
              G   R  +D      G+    + +      +K  V   MG+ +++     K+  +R
Sbjct  195  EKGSGTREYLDHVLSSNGLRPKSMFTISSNQGVKEAVINGMGLSVLSRSVLRKDLIHR  252



Lambda      K        H        a         alpha
   0.320    0.138    0.395    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1013865


  Database: b69049a1becd18c58ccc5fd111ec4760.SwissProt.fasta
    Posted date:  May 20, 2024  1:43 AM
  Number of letters in database: 4,530
  Number of sequences in database:  15



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40