BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 2549b8b91e58e809f4b76944a3907e16.SwissProt.fasta
15 sequences; 6,829 total letters
Query= ACIAD2664
Length=460
Score E
Sequences producing significant alignments: (Bits) Value
P96963 DNA repair protein RadA [Pseudomonas aeruginosa (strain AT... 583 0.0
P24554 DNA repair protein RadA [Escherichia coli (strain K12)] 533 0.0
P24517 DNA repair protein RadA [Salmonella typhimurium (strain LT... 532 0.0
P45266 DNA repair protein RadA [Haemophilus influenzae (strain AT... 525 0.0
P37572 DNA repair protein RadA [Bacillus subtilis (strain 168)] 417 3e-146
Q92F42 DNA repair protein RadA [Listeria innocua serovar 6a (stra... 406 4e-142
Q48761 DNA repair protein RadA [Listeria monocytogenes serovar 1/... 406 4e-142
Q9KGG1 DNA repair protein RadA [Halalkalibacterium halodurans (st... 403 5e-141
Q2YMH5 DNA repair protein RadA [Brucella abortus (strain 2308)] 402 2e-140
P74391 DNA repair protein RadA [Synechocystis sp. (strain PCC 680... 380 4e-131
Q9RVC4 DNA repair protein RadA [Deinococcus radiodurans (strain A... 371 7e-128
A0R563 DNA repair protein RadA [Mycolicibacterium smegmatis (stra... 351 1e-120
P9WHJ9 DNA repair protein RadA [Mycobacterium tuberculosis (strai... 343 2e-117
Q8DRP0 DNA repair protein RadA [Streptococcus pneumoniae (strain ... 327 7e-112
O75771 DNA repair protein RAD51 homolog 4 [Homo sapiens] 51.2 3e-10
>P96963 DNA repair protein RadA [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=453
Score = 583 bits (1504), Expect = 0.0
Identities = 298/457 (65%), Positives = 358/457 (78%), Gaps = 5/457 (1%)
Query 1 MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEISTV 60
M+K K +Y C +CGA PKWAGQC++CG WN+L E +E + + + GG+AG+ + +
Sbjct 1 MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGR---GGWAGQQANL 57
Query 61 TTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASSN 120
TL ++SV R TG E DRVLGGGLV GSVVLIGGDPGIGKSTILLQT +AS
Sbjct 58 KTLAEVSVEEMPRFTTGSTELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAS-R 116
Query 121 SSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQTL 180
ALYVTGEES QVA+RA+RL LP DKLKVM ET +E I E+P V ++DSIQT+
Sbjct 117 VPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATARQEQPRVMVIDSIQTI 176
Query 181 YTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY 240
+TE LQSAPGGV+Q+RESAA+L R+AK SGTA+F+VGHVTKEGALAGPRVLEHMVD VLY
Sbjct 177 FTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLY 236
Query 241 FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMI 300
FEG+SD R R++RAVKNRFGAVNELGVFGMTDKGL+EV+NPSAIFL+R EA+PGS+VM
Sbjct 237 FEGESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMA 296
Query 301 SREGTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYVNV 359
+ EG+RP+LVEVQALVD + PRRV LGL+QNRL MLLAV+HRHGG+ T QDV++NV
Sbjct 297 TWEGSRPMLVEVQALVDTSHLANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNV 356
Query 360 VGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEATKH 419
VGG+K+ ET SDLA++ A SSLR + LP L VFGEVGLSGE+RPVP+GQERLKEA KH
Sbjct 357 VGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEVRPVPSGQERLKEAGKH 416
Query 420 GFTHIILPRGNAPQKKIEGVHVIAVARLHEALQTAME 456
GF I+P GNAP++ G+ VIAV RL +AL E
Sbjct 417 GFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE 453
>P24554 DNA repair protein RadA [Escherichia coli (strain K12)]
Length=460
Score = 533 bits (1372), Expect = 0.0
Identities = 268/456 (59%), Positives = 342/456 (75%), Gaps = 4/456 (1%)
Query 5 KTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGE--ISTVTT 62
K + C +CGAD+P+W GQCS C WN++TEVRL S +L GYAG ++ V
Sbjct 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPMVARNERLSGYAGSAGVAKVQK 65
Query 63 LNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASSNSS 122
L+ IS+ R +TG EFDRVLGGG+V GS +LIGG+PG GKST+LLQT +A +
Sbjct 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAQQMKT 125
Query 123 ALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQTLYT 182
LYVTGEESL QVA+RA RL LPTD L +++ET +E+IC I E+P + ++DSIQ ++
Sbjct 126 -LYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184
Query 183 ETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCVLYFE 242
+QS+PG V+Q+RE+AA LTRFAK G A+ +VGHVTK+G+LAGP+VLEH +DC + +
Sbjct 185 ADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244
Query 243 GQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISR 302
G +DSR+R +R+ KNRFGAVNELGVF MT++GLREV+NPSAIFLSR DE GS VM+
Sbjct 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304
Query 303 EGTRPLLVEVQALVDDA-QGQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYVNVVG 361
EGTRPLLVE+QALVD + PRRVA+GLEQNRL +LLAV+HRHGG+Q + QDV+VNVVG
Sbjct 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVG 364
Query 362 GLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEATKHGF 421
G+K+TET +DLA+LLA SSLR + LPQ L VFGEVGL+GEIRPVP+GQER+ EA KHGF
Sbjct 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424
Query 422 THIILPRGNAPQKKIEGVHVIAVARLHEALQTAMEL 457
I+P N P+K EG+ + V +L +AL +L
Sbjct 425 RRAIVPAANVPKKAPEGMQIFGVKKLSDALSVFDDL 460
>P24517 DNA repair protein RadA [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=460
Score = 532 bits (1370), Expect = 0.0
Identities = 270/456 (59%), Positives = 341/456 (75%), Gaps = 4/456 (1%)
Query 5 KTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGE--ISTVTT 62
K + C +CGAD+P+W GQCS C WN++TEVRL S +L GYAG +S V
Sbjct 6 KRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPTVARNERLSGYAGSAGVSKVQK 65
Query 63 LNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASSNSS 122
L+ IS+ R +TG EFDRVLGGG+V GS +LIGG+PG GKST+LLQT +A +
Sbjct 66 LSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEQMKT 125
Query 123 ALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQTLYT 182
LYVTGEESL QVA+RA RL LPT L +++ET +E+IC I E+P + ++DSIQ ++
Sbjct 126 -LYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICLIAEEEQPKLMVIDSIQVMHM 184
Query 183 ETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCVLYFE 242
+QS+PG V+Q+RE+AA LTRFAK G A+ +VGHVTK+G+LAGP+VLEH +DC + +
Sbjct 185 ADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLD 244
Query 243 GQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISR 302
G +DSR+R +R+ KNRFGAVNELGVF MT++GLREV+NPSAIFLSR DE GS VM+
Sbjct 245 GDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVW 304
Query 303 EGTRPLLVEVQALVDDA-QGQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYVNVVG 361
EGTRPLLVE+QALVD + PRRVA+GLEQNRL +LLAV+HRHGG+Q S QDV+VNVVG
Sbjct 305 EGTRPLLVEIQALVDHSMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVG 364
Query 362 GLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEATKHGF 421
G+K+TET +DLA+LLA SSLR + LPQ L VFGEVGL+GEIRPVP+GQER+ EA KHGF
Sbjct 365 GVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGF 424
Query 422 THIILPRGNAPQKKIEGVHVIAVARLHEALQTAMEL 457
I+P N P+K EG+ V V +L +AL +L
Sbjct 425 RRAIVPAANVPKKPPEGMLVFGVKKLADALSVFDDL 460
>P45266 DNA repair protein RadA [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=458
Score = 525 bits (1351), Expect = 0.0
Identities = 264/449 (59%), Positives = 336/449 (75%), Gaps = 4/449 (1%)
Query 5 KTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEIST-VTTL 63
KT Y C CGA+ +W GQCS C WN++TEVRL ST + GYAGE + TL
Sbjct 6 KTAYVCNDCGAEFSRWQGQCSACKAWNTITEVRL-ISTAKSKNDRFSGYAGETQAKIQTL 64
Query 64 NQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASSNSSA 123
++IS+ R ++G E DRVLGGG+V GS +LIGG PG GKST+LLQ +A N +A
Sbjct 65 SEISLQETPRFSSGFSELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLAK-NMTA 123
Query 124 LYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQTLYTE 183
LYVTGEESL QVA+RA RL LP+D+LK+++ET VE+IC + +P + ++DSIQ ++
Sbjct 124 LYVTGEESLQQVAMRASRLGLPSDQLKMLSETSVEQICNLADQLKPQIIVVDSIQVMHLA 183
Query 184 TLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCVLYFEG 243
+QS+PG V+Q+RE A+ LTR+AK A+ +VGHVTK+G LAGP+VLEH +DC L EG
Sbjct 184 DIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDCSLLLEG 243
Query 244 QSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISRE 303
++DSRYR +R+ KNRFGAVNELGVFGMT++GLREV NPSAIFLSR DE GS VM+ E
Sbjct 244 EADSRYRTLRSHKNRFGAVNELGVFGMTEQGLREVKNPSAIFLSRGDEITSGSSVMVLWE 303
Query 304 GTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYVNVVGG 362
GTRPLLVE+QALVD + PRRVA+GLEQNRL +LLAV+HRHGG+Q + QDV+VNVVGG
Sbjct 304 GTRPLLVEIQALVDHSMLANPRRVAVGLEQNRLALLLAVLHRHGGLQMADQDVFVNVVGG 363
Query 363 LKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEATKHGFT 422
+K++ET +DLA+LLA SS R + LPQ L +FGEVGL+GEIRPVP+GQER+ EA KHGF
Sbjct 364 VKVSETSADLALLLALISSFRNRPLPQDLVIFGEVGLAGEIRPVPSGQERISEAAKHGFK 423
Query 423 HIILPRGNAPQKKIEGVHVIAVARLHEAL 451
I+P GN P+ +E + V V +L +AL
Sbjct 424 RAIVPFGNKPKSAVENMQVFTVKKLTDAL 452
>P37572 DNA repair protein RadA [Bacillus subtilis (strain 168)]
Length=458
Score = 417 bits (1071), Expect = 3e-146
Identities = 214/460 (47%), Positives = 303/460 (66%), Gaps = 9/460 (2%)
Query 1 MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEISTV 60
M+K K+ + C+ CG + PKW G+C CG WN++ E ++ + +R ++ + TV
Sbjct 1 MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMIKKAPANRR----AAFSHSVQTV 56
Query 61 ---TTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMA 117
+ + I S E RV T +GEF+RVLGGG+V GS+VLIGGDPGIGKST+LLQ + ++
Sbjct 57 QKPSPITSIETSEEPRVKTQLGEFNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLS 116
Query 118 SSNSSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSI 177
S++S LY++GEES+ Q LRA RL + L V++ET +E I + P+ ++DSI
Sbjct 117 GSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYISSAIQEMNPSFVVVDSI 176
Query 178 QTLYTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDC 237
QT+Y + SAPG VSQ+RE A L + AK G +FIVGHVTKEG++AGPR+LEHMVD
Sbjct 177 QTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDT 236
Query 238 VLYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSI 297
VLYFEG+ +R++RAVKNRFG+ NE+G+F M ++GL EV NPS IFL GS
Sbjct 237 VLYFEGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSS 296
Query 298 VMISREGTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVY 356
+ S EGTRP+LVE+QAL+ G PRR+A G++ NR+++L+AV+ + G+ QD Y
Sbjct 297 ITASMEGTRPILVEIQALISPTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAY 356
Query 357 VNVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEA 416
+ V GG+K+ E DLA++++ ASS R GEVGL+GE+R V ++R+KEA
Sbjct 357 LKVAGGVKLDEPAIDLAIVISIASSFRDTPPNPADCFIGEVGLTGEVRRVSRIEQRVKEA 416
Query 417 TKHGFTHIILPRGNAP-QKKIEGVHVIAVARLHEALQTAM 455
K GF +I+P N K +G+ VI VA + EAL+T++
Sbjct 417 AKLGFKRMIIPAANLDGWTKPKGIEVIGVANVAEALRTSL 456
>Q92F42 DNA repair protein RadA [Listeria innocua serovar 6a (strain
ATCC BAA-680 / CLIP 11262)]
Length=457
Score = 406 bits (1043), Expect = 4e-142
Identities = 217/459 (47%), Positives = 295/459 (64%), Gaps = 8/459 (2%)
Query 1 MSKVK--TVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEIS 58
M+K K T + C+ CG + KW G+C C EWN + E LE S R+ + GE S
Sbjct 1 MAKAKRTTKFVCQSCGYESAKWMGKCPNCNEWNQMVEA-LEPSKKSRSA---FNHTGEPS 56
Query 59 TVTTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMAS 118
T + QI+ E RV T + E +RVLGGG+V GS+VL+GGDPGIGKST+LLQ + +
Sbjct 57 KATPITQIASEEEARVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTL 116
Query 119 SNSSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQ 178
+N LY++GEES+ Q LRA+RL + D L V AET +E + E + +P ++DSIQ
Sbjct 117 TNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFVKPDFVVIDSIQ 176
Query 179 TLYTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCV 238
T+Y + SA G VSQ+RE A L R AK A+FIVGHVTKEGA+AGPR+LEHMVD V
Sbjct 177 TVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTV 236
Query 239 LYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIV 298
LYFEG+ YR++RAVKNRFG+ NE+G+F M D GL EVANPS +FL E GS V
Sbjct 237 LYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDIGLVEVANPSEVFLEERLEGASGSTV 296
Query 299 MISREGTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYV 357
+ S EGTRP+LVE+QALV G +R+A G++ N++++++AV+ + G+ QD Y+
Sbjct 297 VASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYL 356
Query 358 NVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEAT 417
GG+K+ E DLAV ++ ASS R K GE+GL+GEIR V ++R++EA
Sbjct 357 KAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQEAA 416
Query 418 KHGFTHIILPRGNAPQKKI-EGVHVIAVARLHEALQTAM 455
K GF I +P+ N K+ + V V+ V + EAL+ A+
Sbjct 417 KLGFKRIFIPKNNEGTWKVPKDVQVVGVETIGEALKKAL 455
>Q48761 DNA repair protein RadA [Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e)]
Length=457
Score = 406 bits (1043), Expect = 4e-142
Identities = 218/459 (47%), Positives = 295/459 (64%), Gaps = 8/459 (2%)
Query 1 MSKVK--TVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEIS 58
M+K K T + C+ CG + KW G+C C EWN + E LE S R+ + GE S
Sbjct 1 MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEA-LEPSKKSRSA---FNHTGEPS 56
Query 59 TVTTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMAS 118
T + QI+ E RV T + E +RVLGGG+V GS+VL+GGDPGIGKST+LLQ + +
Sbjct 57 KATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTL 116
Query 119 SNSSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQ 178
+N LY++GEES+ Q LRA+RL + D L V AET +E + E + +P ++DSIQ
Sbjct 117 TNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFVKPDFVVIDSIQ 176
Query 179 TLYTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCV 238
T+Y + SA G VSQ+RE A L R AK A+FIVGHVTKEGA+AGPR+LEHMVD V
Sbjct 177 TVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTV 236
Query 239 LYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIV 298
LYFEG+ YR++RAVKNRFG+ NE+G+F M D GL EVANPS +FL E GS V
Sbjct 237 LYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTV 296
Query 299 MISREGTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYV 357
+ S EGTRP+LVE+QALV G +R+A G++ N++++++AV+ + G+ QD Y+
Sbjct 297 VASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYL 356
Query 358 NVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEAT 417
GG+K+ E DLAV ++ ASS R K GE+GL+GEIR V ++R++EA
Sbjct 357 KAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQEAA 416
Query 418 KHGFTHIILPRGNAPQKKI-EGVHVIAVARLHEALQTAM 455
K GF I +P+ N KI + V V+ V + EAL+ A+
Sbjct 417 KLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKAL 455
>Q9KGG1 DNA repair protein RadA [Halalkalibacterium halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)]
Length=457
Score = 403 bits (1036), Expect = 5e-141
Identities = 208/457 (46%), Positives = 295/457 (65%), Gaps = 4/457 (1%)
Query 1 MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEISTV 60
M+K KT + C++CG + KW G+C C WNS+ E E G AG I+
Sbjct 1 MAKKKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSG-AG-IAKP 58
Query 61 TTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASSN 120
+ ++ E R+ T + E +RVLGGG+V GS+VL+GGDPGIGKST+LLQ + +A
Sbjct 59 QPITKVEREQEPRIDTSMKELNRVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLADLK 118
Query 121 SSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQTL 180
LY++GEES+ Q +R+ RL + +D L V+AET +E+I + + PT+ I+DSIQT+
Sbjct 119 QRVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQAIGEVDPTLVIIDSIQTV 178
Query 181 YTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY 240
Y + + SAPG V+Q+RE A R AK +G A+FIVGHVTK+GA+AGP++LEHMVD VLY
Sbjct 179 YQDEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAIAGPKLLEHMVDSVLY 238
Query 241 FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMI 300
FEG+ YR++RAVKNRFG+ NE+G+F M + GL EVANPS IFL + GS V+
Sbjct 239 FEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGSTVVA 298
Query 301 SREGTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYVNV 359
S EGTRP+LVE+QAL+ G PRR+A G++ NR+++L+AV+ + G+ QD YVNV
Sbjct 299 SMEGTRPVLVELQALISPTSFGNPRRMATGVDHNRISLLMAVLEKRVGMLLQNQDAYVNV 358
Query 360 VGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEATKH 419
GG+++ E DL + ++ ASS R + V GE+GL+GE+R V +R+ EA K
Sbjct 359 AGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTGEVRRVSRIDQRVNEAAKL 418
Query 420 GFTHIILPRGNAPQKKIEG-VHVIAVARLHEALQTAM 455
GF +I+P N I + VI V+ + +AL+ +
Sbjct 419 GFKRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEVTL 455
>Q2YMH5 DNA repair protein RadA [Brucella abortus (strain 2308)]
Length=467
Score = 402 bits (1033), Expect = 2e-140
Identities = 210/453 (46%), Positives = 288/453 (64%), Gaps = 7/453 (2%)
Query 1 MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEISTV 60
M+K + + C+ CGA H +WAG+C CGEWN+L E + L G +
Sbjct 1 MAKTRVQFICQNCGAVHSRWAGKCDSCGEWNTLIEEGTNSGIGSGPAAMLSKRKGRAVAL 60
Query 61 TTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASSN 120
T+L+ + R+ +GI E DRV GGG V GS +LIGGDPGIGKST+L Q A +++
Sbjct 61 TSLSG-EIEDAPRIVSGISELDRVTGGGFVRGSALLIGGDPGIGKSTLLTQAAAALSNRG 119
Query 121 SSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHE-----RPTVAILD 175
+YV+GEE+++Q+ LRAQRL + +++ AET VE I ++ + RP + I+D
Sbjct 120 HRIVYVSGEEAVAQIRLRAQRLGVAASAVELAAETNVEDIIATISSDNSGSKRPDLVIID 179
Query 176 SIQTLYTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMV 235
SIQTL+T+ SAPG V+Q+R SA + R+AK +G A+ +VGHVTK+G +AGPRV+EHMV
Sbjct 180 SIQTLWTDMADSAPGTVTQVRSSAQAMIRYAKQTGAAVVLVGHVTKDGQIAGPRVVEHMV 239
Query 236 DCVLYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPG 295
D VLYFEG+ YR++R VKNRFG +E+GVF M+D GLREV+NPS +FL +E PG
Sbjct 240 DGVLYFEGEGGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKSPG 299
Query 296 SIVMISREGTRPLLVEVQALV-DDAQGQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQD 354
+ V EGTRP+LVE+QALV + G PRR +G + RL M+LAV+ H GV+ D
Sbjct 300 AAVFAGMEGTRPVLVEIQALVAPSSLGTPRRAVVGWDGGRLAMILAVLESHCGVRFGQHD 359
Query 355 VYVNVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLK 414
VY+NV GG +I+E +D+AV A SS+ G ALP FGE+ LSG +R V + +RLK
Sbjct 360 VYLNVAGGYRISEPAADIAVAAALVSSMAGIALPPDCVYFGEISLSGAVRAVSHAVQRLK 419
Query 415 EATKHGFTHIILPRGNAPQKKIEGVHVIAVARL 447
EA K GF +P G+ K ++ A L
Sbjct 420 EAEKLGFRQAEVPNGSGELWKDRNFRLMETAAL 452
>P74391 DNA repair protein RadA [Synechocystis sp. (strain PCC
6803 / Kazusa)]
Length=505
Score = 380 bits (975), Expect = 4e-131
Identities = 213/483 (44%), Positives = 297/483 (61%), Gaps = 31/483 (6%)
Query 1 MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEV---RLETSTNHRAKPKLGGYAGEI 57
M+K +T + C CGADH +W G+C +C E+ SL E + + TNHR+ + ++
Sbjct 1 MAKARTKFVCSACGADHAQWFGRCPKCHEYGSLQEEIVNAVSSGTNHRSLGAQKSRSSKV 60
Query 58 ST-----VTTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQT 112
T T +QI ++ R +G GE DRVLGGG+V G+++LIGGDPGIGKST+LLQ
Sbjct 61 KTGQPQAALTFSQIRQENQGRFLSGYGELDRVLGGGIVPGALILIGGDPGIGKSTLLLQV 120
Query 113 ATYMASSNSSALYVTGEESLSQVALRAQRLDLPTD-----------------KLKVMAET 155
A +A+ LYV+ EES Q+ LRA RL + L V+ ET
Sbjct 121 AFQLATRLPRILYVSAEESGQQIKLRATRLGITQTVEPSQAQDGINNLAHDGNLFVLPET 180
Query 156 CVERICEILAHERPTVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRFAKHSGTALFI 215
++ I L +P VAI+DSIQ LY L SAPG VSQ+RE LL + AK +LFI
Sbjct 181 NLDDILRELEALQPQVAIIDSIQNLYFPALSSAPGSVSQVRECTGLLMQLAKRDHISLFI 240
Query 216 VGHVTKEGALAGPRVLEHMVDCVLYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGL 275
VGHVTKEGA+AGP+VLEH+VD VLYF+G + +R++R+VKNRFGA E+G+F M GL
Sbjct 241 VGHVTKEGAIAGPKVLEHLVDTVLYFQGDRFASHRLLRSVKNRFGATQEIGIFEMVQSGL 300
Query 276 REVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVD-DAQGQPRRVALGLEQNR 334
+EV NPS +FL +E + G+ + ++ EGTRPL+VE+QALV + PRR G++ NR
Sbjct 301 QEVLNPSQLFLGSREEFMSGTAITVACEGTRPLVVELQALVSPTSYASPRRSTTGVDYNR 360
Query 335 LNMLLAVMHRHGGVQTSGQDVYVNVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVF 394
L +LAV+ + GV S D Y++V GGL++ E DLA+ +A +S R + + + +
Sbjct 361 LLQVLAVLEKRLGVPLSKLDAYLSVAGGLEVEEPAVDLAMAIALVASFRDRVVDPTMIIL 420
Query 395 GEVGLSGEIRPVPNGQERLKEATKHGFTHIILPRGNAPQKKIE--GVHVIAVARLHEALQ 452
GE+GL G+IRPV + RLKEA K GF I+P+G Q IE G+ +I V ++ A+
Sbjct 421 GEIGLGGQIRPVSQLEIRLKEAAKLGFKKAIVPKG---QTGIESAGIKLIPVGKVFAAIA 477
Query 453 TAM 455
A+
Sbjct 478 VAL 480
>Q9RVC4 DNA repair protein RadA [Deinococcus radiodurans (strain
ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051
/ NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)]
Length=503
Score = 371 bits (953), Expect = 7e-128
Identities = 206/440 (47%), Positives = 282/440 (64%), Gaps = 7/440 (2%)
Query 3 KVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRA-KPKLGGYAG-EISTV 60
KVKT Y C CG K G+C C WNS E ST+ ++ + LGGY G + +
Sbjct 59 KVKTNYICNSCGYQSAKPLGRCPNCQAWNSFEEEVPTASTSGKSGRGGLGGYGGVKGGKL 118
Query 61 TTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASSN 120
T L+ + E R +GI E DRVLGGGLV G V LIGG+PGIGKST+LLQ A +AS
Sbjct 119 TPLSTVGRREEPRTPSGIPELDRVLGGGLVAGGVTLIGGEPGIGKSTLLLQVADKVASRG 178
Query 121 SSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSIQTL 180
+ LYV GEESL Q+ LRA RL + D L++ +T E I +L +P + I+DSIQT+
Sbjct 179 GTVLYVAGEESLEQIRLRADRLGVAAD-LQMTRDTRAEHIAALLEEHKPALCIVDSIQTV 237
Query 181 YTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY 240
E + APGGV+Q+R+ A+LTR AK +GTA +VGHVTK+G +AGP+V+EH+VD ++
Sbjct 238 TVEG-EGAPGGVAQVRDGTAMLTRAAKETGTATVLVGHVTKDGTVAGPKVMEHIVDTTVF 296
Query 241 FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMI 300
E + +R++R+VKNRFG ELGVF M +GL V NPSA FL+ +PGS+V
Sbjct 297 LE--TVGAFRLLRSVKNRFGQAGELGVFEMRGEGLIAVDNPSAAFLAERPLDVPGSVVAA 354
Query 301 SREGTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVYVNV 359
+ +G RP+L+EVQAL RRV +GL+ R++++LAV+ R + G DVYVN+
Sbjct 355 TVDGQRPMLLEVQALASKTPYPNARRVVVGLDPRRVDVVLAVLERRLDLTLGGLDVYVNL 414
Query 360 VGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEATKH 419
GGLK+ + G DLAV LA S++ G+ALPQ +AVFGEVGL+GE+R R +EA +
Sbjct 415 AGGLKVPDPGLDLAVALAVYSAVVGRALPQNVAVFGEVGLAGEVRSTQMALRRAEEAGRA 474
Query 420 GFTHIILPRGNAPQKKIEGV 439
G+ +++P G Q ++ V
Sbjct 475 GYKRLVVPPGLDGQAGVKSV 494
>A0R563 DNA repair protein RadA [Mycolicibacterium smegmatis (strain
ATCC 700084 / mc(2)155)]
Length=466
Score = 351 bits (901), Expect = 1e-120
Identities = 190/467 (41%), Positives = 279/467 (60%), Gaps = 19/467 (4%)
Query 2 SKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYA----GEI 57
SK+++ YRC +C PKW G+C+ CG W ++ EV + N KL G A
Sbjct 4 SKIRSQYRCSECQHVAPKWVGRCANCGTWGTVDEVAVLAGNN-----KLNGAARRSVAPT 58
Query 58 STVTTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMA 117
S + I TG+ E DRVLGGGLV GSV L+ GDPG+GKST+LL+ A A
Sbjct 59 SPAVPITSIDPGVTRHYPTGVSELDRVLGGGLVAGSVTLLAGDPGVGKSTLLLEVANRWA 118
Query 118 SSNSSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAILDSI 177
S ALY++GEES Q+ LRA+R D++ + AE+ ++ + +P++ ++DS+
Sbjct 119 HSGKRALYLSGEESAGQIRLRAERTGCTHDQVYLAAESDLQIALGHIDEVKPSLVVVDSV 178
Query 178 QTLYTETLQSAPGGVSQIRESAALLTRFAKHS----GTALFIVGHVTKEGALAGPRVLEH 233
QT+ T GGV+Q+R LT +AK + A+ +VGHVTK+GA+AGPR LEH
Sbjct 179 QTMSTTEADGVTGGVTQVRAVTTSLTAYAKAAVGDPAVAMILVGHVTKDGAIAGPRSLEH 238
Query 234 MVDCVLYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAI 293
+VD VL+FEG S RM+R VKNRFGA +E+G F + D G+ V++PS +FL + A+
Sbjct 239 LVDVVLHFEGDRASSLRMVRGVKNRFGAADEVGCFQLHDNGIECVSDPSGLFLDQRPLAV 298
Query 294 PGSIVMISREGTRPLLVEVQALVDDAQGQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQ 353
PG+ V ++ +G RP++ EVQALV G PRR G++ R M+ AV+ + +
Sbjct 299 PGTAVTVTLDGKRPMIGEVQALVSPPAGPPRRAVSGIDSARAAMIGAVLQTRCRMPINSN 358
Query 354 DVYVNVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERL 413
D+Y++ VGG+++T+ +DLAV LA AS+ A+P + GEVGL+G++R V RL
Sbjct 359 DLYLSTVGGMRLTDPSADLAVALAIASAYFDIAMPMKAIAIGEVGLAGDLRRVTGMDRRL 418
Query 414 KEATKHGFTHIILPRG--NAPQKKIEGVHVIAVARLHEALQTAMELS 458
EA + GFT ++P G +AP G+ V+A + A+QT E++
Sbjct 419 SEAARLGFTTAVVPPGVTSAP----AGLKVVAADNIRAAVQTMREIA 461
>P9WHJ9 DNA repair protein RadA [Mycobacterium tuberculosis (strain
ATCC 25618 / H37Rv)]
Length=480
Score = 343 bits (881), Expect = 2e-117
Identities = 184/462 (40%), Positives = 281/462 (61%), Gaps = 11/462 (2%)
Query 1 MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVRLETSTNHRAKPKLGGYAGEISTV 60
M+ ++ YRC +C KW G+C ECG W ++ EV + ++ + + +G + +
Sbjct 1 MANARSQYRCSECRHVSAKWVGRCLECGRWGTVDEVAVLSAVGGTRRRSVAPASGAVP-I 59
Query 61 TTLNQISVSHETRVA-TGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASS 119
+ ++ +H TR TGI E DRVLGGG+V GSV L+ GDPG+GKST+LL+ A A S
Sbjct 60 SAVD----AHRTRPCPTGIDELDRVLGGGIVPGSVTLLAGDPGVGKSTLLLEVAHRWAQS 115
Query 120 NSSALYVTGEESLSQVALRAQRLDLPTD--KLKVMAETCVERICEILAHERPTVAILDSI 177
ALYV+GEES Q+ LRA R+ T+ ++ + A++ V + + + +P + I+DS+
Sbjct 116 GRRALYVSGEESAGQIRLRADRIGCGTEVEEIYLAAQSDVHTVLDQIETVQPALVIVDSV 175
Query 178 QTLYTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHMVDC 237
QT+ T GGV+Q+R A LT AK + AL +VGHVTK+GA+AGPR LEH+VD
Sbjct 176 QTMSTSEADGVTGGVTQVRAVTAALTAAAKANEVALILVGHVTKDGAIAGPRSLEHLVDV 235
Query 238 VLYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSI 297
VL+FEG + RM+R VKNRFGA +E+G F + D G+ + +PS +FL + + G+
Sbjct 236 VLHFEGDRNGALRMVRGVKNRFGAADEVGCFLLHDNGIDGIVDPSNLFLDQRPTPVAGTA 295
Query 298 VMISREGTRPLLVEVQALV-DDAQGQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQDVY 356
+ ++ +G RPL+ EVQAL+ G PRR G+ Q R M+ AV+ +H + + D+Y
Sbjct 296 ITVTLDGKRPLVGEVQALLATPCGGSPRRAVSGIHQARAAMIAAVLEKHARLAIAVNDIY 355
Query 357 VNVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERLKEA 416
++ VGG+++TE +DLAV +A AS+ LP + GEVGL+G+IR V RL EA
Sbjct 356 LSTVGGMRLTEPSADLAVAIALASAYANLPLPTTAVMIGEVGLAGDIRRVNGMARRLSEA 415
Query 417 TKHGFTHIILPRGNAPQKKIEGVHVIAVARLHEALQTAMELS 458
+ GFT ++P + P G+H + + + ALQ ++++
Sbjct 416 ARQGFTIALVPPSDDPVP--PGMHALRASTIVAALQYMVDIA 455
>Q8DRP0 DNA repair protein RadA [Streptococcus pneumoniae (strain
ATCC BAA-255 / R6)]
Length=420
Score = 327 bits (839), Expect = 7e-112
Identities = 181/400 (45%), Positives = 254/400 (64%), Gaps = 3/400 (1%)
Query 55 GEISTVTTLNQISVSHETRVATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTAT 114
GE + L +++ + R T + EF+RVLGGG+V GS+VLIGGDPGIGKST+LLQ +T
Sbjct 18 GEKTKPMKLAEVTSINVNRTKTEMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVST 77
Query 115 YMASSNSSALYVTGEESLSQVALRAQRLDLPTDKLKVMAETCVERICEILAHERPTVAIL 174
+ S + LYV+GEES Q+ LRA+RL + + AET ++ + + +P I+
Sbjct 78 QL-SQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPDFLII 136
Query 175 DSIQTLYTETLQSAPGGVSQIRESAALLTRFAKHSGTALFIVGHVTKEGALAGPRVLEHM 234
DSIQT+ + + G VSQ+RE A L + AK + A+FIVGHVTKEG LAGPR+LEHM
Sbjct 137 DSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHM 196
Query 235 VDCVLYFEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIP 294
VD VLYFEG+ +R++RAVKNRFG+ NE+G+F M GL EV NPS +FL +
Sbjct 197 VDTVLYFEGERHHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGAT 256
Query 295 GSIVMISREGTRPLLVEVQALVDDAQ-GQPRRVALGLEQNRLNMLLAVMHRHGGVQTSGQ 353
GS ++++ EGTRP+L EVQALV G +R GL+ NR ++++AV+ + G+ Q
Sbjct 257 GSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQ 316
Query 354 DVYVNVVGGLKITETGSDLAVLLACASSLRGKALPQQLAVFGEVGLSGEIRPVPNGQERL 413
D Y+ GG+K+ E DLAV +A ASS + K Q GE+GL+GEIR V ++R+
Sbjct 317 DAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQRI 376
Query 414 KEATKHGFTHIILPRGNAPQKKI-EGVHVIAVARLHEALQ 452
EA K GFT I +P+ + + + + VI V + E L+
Sbjct 377 NEAAKLGFTKIYVPKNSLTGITLPKEIQVIGVTTIQEVLK 416
>O75771 DNA repair protein RAD51 homolog 4 [Homo sapiens]
Length=328
Score = 51.2 bits (121), Expect = 3e-10
Identities = 50/174 (29%), Positives = 76/174 (44%), Gaps = 26/174 (15%)
Query 74 VATGIGEFDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATYMASS-NSSALYVTGEESL 132
++TGIG D++L GL TG V I G PG GK+ + L A +A + LYV L
Sbjct 82 LSTGIGSLDKLLDAGLYTGEVTEIVGGPGSGKTQVCLCMAANVAHGLQQNVLYVDSNGGL 141
Query 133 SQVALRAQRLDLPTDKLKVMAETC----------VERICEILAHERPTVA--ILDSIQTL 180
+ L Q L T + AE + ++ ++L R TVA + S T+
Sbjct 142 TASRL-LQLLQAKTQDEEEQAEALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGSSGTV 200
Query 181 YTETLQSAPGGVS-----QIRESAALLTRFAKH-------SGTALFIVGHVTKE 222
+ S VS Q RE AL+ + A+ G A+ + H+T++
Sbjct 201 KVVVVDSVTAVVSPLLGGQQREGLALMMQLARELKTLARDLGMAVVVTNHITRD 254
Lambda K H a alpha
0.319 0.134 0.384 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2467992
Database: 2549b8b91e58e809f4b76944a3907e16.SwissProt.fasta
Posted date: May 20, 2024 12:28 AM
Number of letters in database: 6,829
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
