BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 4968cce90b4235a9d59c1075dd2c6b40.SwissProt.fasta
15 sequences; 4,694 total letters
Query= ACIAD2678
Length=334
Score E
Sequences producing significant alignments: (Bits) Value
Q04710 XylDLEGF operon transcriptional activator 1 [Pseudomonas p... 103 1e-28
P07859 XylDLEGF operon transcriptional activator [Pseudomonas put... 101 5e-28
Q04713 XylDLEGF operon transcriptional activator 1 [Pseudomonas p... 98.2 1e-26
Q05335 XylDLEGF operon transcriptional activator 3 [Pseudomonas p... 95.9 7e-26
P43462 Probable thc operon regulatory protein [Rhodococcus erythr... 82.8 3e-21
Q05092 XylDLEGF operon transcriptional activator 2 [Pseudomonas p... 77.4 1e-20
Q84BZ4 Anthranilate 1,2-dioxygenase regulatory protein [Burkholde... 79.3 4e-20
P36547 HTH-type DNA-binding transcriptional activator EutR [Esche... 60.5 1e-13
Q9ZFU7 HTH-type DNA-binding transcriptional activator EutR [Salmo... 58.9 4e-13
P55449 Uncharacterized HTH-type transcriptional regulator y4fK [S... 53.1 3e-11
P28808 Thermoregulatory protein LcrF [Yersinia pestis] 48.5 7e-10
P0C2V5 Virulence regulon transcriptional activator VirF [Yersinia... 47.8 1e-09
P77379 RCS-specific HTH-type transcriptional activator RclR [Esch... 41.2 2e-07
G3XCU2 HTH-type transcriptional regulator ArgR [Pseudomonas aerug... 40.8 3e-07
Q47129 Transcriptional activator FeaR [Escherichia coli (strain K... 35.4 1e-05
>Q04710 XylDLEGF operon transcriptional activator 1 [Pseudomonas
putida]
Length=321
Score = 103 bits (256), Expect = 1e-28
Identities = 81/290 (28%), Positives = 140/290 (48%), Gaps = 24/290 (8%)
Query 49 RLPHK---RLAMGKISYGAHVCINTSNLRA-YSISLPVQGKQVLNVRGAEYISNCDKGLI 104
RL H+ L + +ISYG V + + L Y + + ++G + G E+ + L+
Sbjct 45 RLHHRIFGGLDLCRISYGGSVRVISPGLETCYHLQIILKGHCLWRDHGQEHYFAPGELLL 104
Query 105 LSNNELQDLVIDKDCIKYQVVIPEHSMQQVLGEL-LHQPLDYPVLFNPEMNLNVDSSLFV 163
L+ ++ DL +DC K+ V +P + + E H+P + + F NL
Sbjct 105 LNPDDQADLTYSEDCEKFIVKLPSVVLDRACSENNWHKPRE-GIRFAARHNL-------- 155
Query 164 WWKNIDNFLNLRA----QFKGVQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYE 219
+ +D F+NL + + + M E Y + LL +N S R + ++
Sbjct 156 --QQLDGFINLLGLVCDEAEHTKSMPRVQEHYAGIIASKLLEMLGSNVS---REIFSKGN 210
Query 220 PEYLRKICEFIRQHAHENICADDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIY 279
P + R + +FI ++ NI + L +A +S LY F+ + GT+P ++R +L+ I
Sbjct 211 PSFER-VVQFIEENLKRNISLERLAELAMMSPRSLYNLFEKHAGTTPKNYIRNRKLESIR 269
Query 280 KILKSSSNKKLSISKLAYDWGFNHLGRFSQEYRDEFGETPTETKHKIKWE 329
L S SI+++A D+GF HLGRF++ YR FGE P++T + K E
Sbjct 270 ACLNDPSANVRSITEIALDYGFLHLGRFAENYRSAFGELPSDTLRQCKKE 319
>P07859 XylDLEGF operon transcriptional activator [Pseudomonas
putida]
Length=321
Score = 101 bits (252), Expect = 5e-28
Identities = 77/281 (27%), Positives = 136/281 (48%), Gaps = 21/281 (7%)
Query 55 LAMGKISYGAHVCINTSNLRA-YSISLPVQGKQVLNVRGAEYISNCDKGLILSNNELQDL 113
L + +ISYG V + + L Y + + ++G + G E+ + L+L+ ++ DL
Sbjct 54 LDLCRISYGGSVRVISPGLETCYHLQIILKGHCLWRGHGQEHYFAPGELLLLNPDDQADL 113
Query 114 VIDKDCIKYQVVIPEHSMQQVLGEL-LHQPLDYPVLFNPEMNLNVDSSLFVWWKNIDNFL 172
+DC K+ V +P + + + H+P + + F NL + +D F+
Sbjct 114 TYSEDCEKFIVKLPSVVLDRACSDNNWHKPRE-GIRFAARHNL----------QQLDGFI 162
Query 173 NLRA----QFKGVQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICE 228
NL + + + M E Y + LL +N S R + ++ P + R + +
Sbjct 163 NLLGLVCDEAEHTKSMPRVQEHYAGIIASKLLEMLGSNVS---REIFSKGNPSFER-VVQ 218
Query 229 FIRQHAHENICADDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNK 288
FI ++ NI + L +A +S LY F+ + GT+P ++R +L+ I L S
Sbjct 219 FIEENLKRNISLERLAELAMMSPRSLYNLFEKHAGTTPKNYIRNRKLESIRACLNDPSAN 278
Query 289 KLSISKLAYDWGFNHLGRFSQEYRDEFGETPTETKHKIKWE 329
SI+++A D+GF HLGRF++ YR FGE P++T + K E
Sbjct 279 VRSITEIALDYGFLHLGRFAENYRSAFGELPSDTLRQCKKE 319
>Q04713 XylDLEGF operon transcriptional activator 1 [Pseudomonas
putida]
Length=331
Score = 98.2 bits (243), Expect = 1e-26
Identities = 75/282 (27%), Positives = 138/282 (49%), Gaps = 23/282 (8%)
Query 55 LAMGKISYGAHVCINTSNLRA-YSISLPVQGKQVLNVRGAEYISNCDKGLILSNNELQDL 113
L + +ISYG V + + L Y + + ++G + G E+ + + L+L+ ++ DL
Sbjct 54 LDLCRISYGGSVRVISPGLETCYHLQIILKGHCLWRGYGQEHYFSPGELLLLNPDDQADL 113
Query 114 VIDKDCIKYQVVIPEHSMQQVLGEL-LHQPLDYPVLFNPEMNLNVDSSLFVWWKNIDNFL 172
+DC K+ V +P + + + H+P + + F NL + +D F+
Sbjct 114 TYSEDCEKFIVKLPSVVLDRACSDNNWHKPRE-GIRFAARHNL----------QQLDGFI 162
Query 173 NLRA----QFKGVQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICE 228
NL + + + M E Y + LL +N S R + ++ P + R + +
Sbjct 163 NLLGLVCDEAEHTKSMPRVQEHYAGIIASKLLEMLGSNVS---REIFSKGNPSFER-VVQ 218
Query 229 FIRQHAHENICADDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNK 288
FI ++ NI + L +A +S LY F+ + GT+P ++R +L+ I L +
Sbjct 219 FIEENLKRNISLERLAELALMSPRSLYTLFEKHAGTTPKNYIRNRKLECIRARLSDPNAN 278
Query 289 KLSISKLAYDWGFNHLGRFSQEYRDEFGETPTET--KHKIKW 328
S++++A D+GF H GRF++ YR FGE P++T + K+KW
Sbjct 279 VRSVTEMALDYGFFHTGRFAENYRSTFGELPSDTLRRRKMKW 320
>Q05335 XylDLEGF operon transcriptional activator 3 [Pseudomonas
putida]
Length=331
Score = 95.9 bits (237), Expect = 7e-26
Identities = 72/281 (26%), Positives = 132/281 (47%), Gaps = 21/281 (7%)
Query 55 LAMGKISYGAHVCINTSNLRA-YSISLPVQGKQVLNVRGAEYISNCDKGLILSNNELQDL 113
L + +ISYG V + + L Y + + ++G + G E+ + + L+++ ++ DL
Sbjct 54 LDLCRISYGGSVRVTSPGLETCYHLQVLLKGHCLWRGYGLEHYFSPGELLLINPDDRADL 113
Query 114 VIDKDCIKYQVVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSSLFVWWKNIDNFLN 173
+DC K+ V +P + + E + F NL + +D F+N
Sbjct 114 TYSEDCEKFIVKLPSVVLDRACSESYWHKPSEGIRFTTRHNL----------QQLDGFIN 163
Query 174 LRA----QFKGVQGMQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEF 229
L + + M E Y + LL +N S R ++ P + R + +F
Sbjct 164 LLGLVCDEAEHTNSMPRVQEYYTGIIATKLLEMLSSNVS---RETFSEGCPSFER-VVQF 219
Query 230 IRQHAHENICADDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKK 289
I + ++I + L +A +S LY F+ + GT+P ++R +L+ I L +
Sbjct 220 IEDNLKQSISLERLAELALMSPRSLYTLFEKHAGTTPKNYIRNRKLECIRARLSDPNANV 279
Query 290 LSISKLAYDWGFNHLGRFSQEYRDEFGETPTET--KHKIKW 328
S++++A D+GF H GRF++ YR FGE P++T + K+KW
Sbjct 280 RSVTEMALDYGFFHTGRFAENYRSTFGELPSDTLRRRKMKW 320
>P43462 Probable thc operon regulatory protein [Rhodococcus erythropolis]
Length=332
Score = 82.8 bits (203), Expect = 3e-21
Identities = 65/277 (23%), Positives = 131/277 (47%), Gaps = 18/277 (6%)
Query 55 LAMGKISYGAHVCINTSNLR-AYSISLPVQGKQVLNVRGAEYISNCDKGLILSNNE---L 110
+ +G++ Y V I T+ LR +Y +++P++G+ V A ++ + + ++ L
Sbjct 56 VTLGRLDYSTEVEIFTNELRDSYHVNIPMRGELVTGSGRARTVATPHRAAVYRCDQRTLL 115
Query 111 QDLVIDKDCIKYQVVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSSLFVWWKNIDN 170
+ + I +++ L L + P++F M+L++D+ + W ++
Sbjct 116 RGWASPYPTPVLALKIDRRALEDQLAARLGSEIVDPIVFG--MDLDLDTVVGRQWLSLVE 173
Query 171 FLNLRAQFKGVQGMQ-LWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPE-----YLR 224
L+ + + + S L+ LL++ E++Y L YEP+ +R
Sbjct 174 GLSHQLDSPEALALHPIVSTPMAECLMSGLLVAAEHDYRARL------YEPKPALPGIVR 227
Query 225 KICEFIRQHAHENICADDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKS 284
+++ HA + + + R GVS L FQ+ GT+P+ L+ R+Q+ K L
Sbjct 228 LAVDYLEAHAQQPLTVAQVARNVGVSVRSLQVGFQNSLGTTPMRQLKIIRMQKARKDLLR 287
Query 285 SSNKKLSISKLAYDWGFNHLGRFSQEYRDEFGETPTE 321
+ ++++A WGF H+GRF+ EY+ FG +P+E
Sbjct 288 ADPASEGVTEIAQRWGFLHVGRFAGEYKQTFGVSPSE 324
>Q05092 XylDLEGF operon transcriptional activator 2 [Pseudomonas
putida]
Length=157
Score = 77.4 bits (189), Expect = 1e-20
Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 6/146 (4%)
Query 184 MQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICADDL 243
M L +E Y + LL + +N S R + P + R + +FI ++ +I + L
Sbjct 3 MTLVAEHYTKIIATKLLETLSSNVS---RKGFVEGNPCFER-VVQFIEENVKRSISLEQL 58
Query 244 HRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNH 303
+A +S LY F+ + GT+P+ ++R +L+ + L + + SI+++A D+GF H
Sbjct 59 AELALMSPRSLYTMFEKHTGTTPMNYIRNRKLECVRACLSNPTTNIRSITEVALDYGFLH 118
Query 304 LGRFSQEYRDEFGETPTET--KHKIK 327
LGRF+++YR FGE P++T HK+K
Sbjct 119 LGRFAEKYRSTFGELPSDTLSLHKMK 144
>Q84BZ4 Anthranilate 1,2-dioxygenase regulatory protein [Burkholderia
cepacia]
Length=318
Score = 79.3 bits (194), Expect = 4e-20
Identities = 73/310 (24%), Positives = 137/310 (44%), Gaps = 16/310 (5%)
Query 14 SSQADFAHHLMSSICGEHRLETSCRDKLDFHYEGIRLPHKRLAMGKISYGAHVCINTSNL 73
S D +S + H L S R + H + +RL L +G I++G + + +
Sbjct 19 SRDLDETRERISRVMQPHALLPSGRMQGAAHMDFVRLGG--LGIGTIAFGDAMRVQVDAV 76
Query 74 RAYSISL-PVQGKQVLNVRGAEYISNCDKGLILSNNELQDLVIDKDCIKYQVVIPEHSMQ 132
Y + + + G + G + G++ + E D V+ DC ++ + I ++
Sbjct 77 DGYYLLMFCLSGHAQVAAMGRRLGVDGQTGVLCAPGERFDAVLSADCEQFVLRIDAATV- 135
Query 133 QVLGELLHQPLDYPVLFNPEMNLNVDSSLFVWWKNIDNFLNLRAQFKGVQGMQLWSEDYE 192
G L P +P ++++ D++L W + + A + E
Sbjct 136 ---GSLTGNPR---ATLDPVLHIS-DAALAAWHQQLMLVARSPALLARANANPRVAAQLE 188
Query 193 NFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICADDLHRIAGVSKT 252
+ LI L+ + ++ + P +L + EF+ H + + D+ A V +
Sbjct 189 HLLIDLLI----EGHPPAAASMRHDPAPGFLLRAQEFVNAHYAQPLQLADIVVAANVPER 244
Query 253 KLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEYR 312
L F + G SP+ +LR RL+ ++L+ S ++ I+ +A D GF HLGRF+ YR
Sbjct 245 TLRDAFLQFRGMSPMQYLRATRLEHARELLRRSQPER-RIADVALDCGFTHLGRFAIAYR 303
Query 313 DEFGETPTET 322
++FGE+P+ET
Sbjct 304 EKFGESPSET 313
>P36547 HTH-type DNA-binding transcriptional activator EutR [Escherichia
coli (strain K12)]
Length=350
Score = 60.5 bits (145), Expect = 1e-13
Identities = 35/134 (26%), Positives = 65/134 (49%), Gaps = 0/134 (0%)
Query 192 ENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICADDLHRIAGVSK 251
+N L+ + +E ++ +Q L + E++ ++ E + DL VS+
Sbjct 211 DNLLMAMGAMLEEAQPMVTAESISHQSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSR 270
Query 252 TKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEY 311
L F G P A+L++ RL + + L S ++ +++ A WGF HLG+F+ +Y
Sbjct 271 RTLQNAFHAILGIGPNAWLKRIRLNAVRRELISPWSQSMTVKDAAMQWGFWHLGQFATDY 330
Query 312 RDEFGETPTETKHK 325
+ F E P+ T H+
Sbjct 331 QQLFSEKPSLTLHQ 344
Score = 17.3 bits (33), Expect = 7.7
Identities = 9/41 (22%), Positives = 18/41 (44%), Gaps = 0/41 (0%)
Query 124 VVIPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDSSLFVW 164
+ + + +MQ L DY LF+ + +L + + W
Sbjct 309 MTVKDAAMQWGFWHLGQFATDYQQLFSEKPSLTLHQRMREW 349
>Q9ZFU7 HTH-type DNA-binding transcriptional activator EutR [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=350
Score = 58.9 bits (141), Expect = 4e-13
Identities = 35/134 (26%), Positives = 64/134 (48%), Gaps = 0/134 (0%)
Query 192 ENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICADDLHRIAGVSK 251
+N L+ + +E ++ +Q L + E++ ++ E + DL VS+
Sbjct 211 DNLLLAMGTMLEEAKPIHSAESISHQGYRRLLSRAREYVLENMSEPLTVLDLCNQLHVSR 270
Query 252 TKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEY 311
L F G P A+L++ RL + + L S ++ ++ A WGF HLG+F+ +Y
Sbjct 271 RTLQNAFHAILGIGPNAWLKRIRLNAVRRELISPWSQSATVKDAAMQWGFWHLGQFATDY 330
Query 312 RDEFGETPTETKHK 325
+ F E P+ T H+
Sbjct 331 QQLFAEKPSLTLHQ 344
>P55449 Uncharacterized HTH-type transcriptional regulator y4fK
[Sinorhizobium fredii (strain NBRC 101917 / NGR234)]
Length=427
Score = 53.1 bits (126), Expect = 3e-11
Identities = 47/197 (24%), Positives = 91/197 (46%), Gaps = 9/197 (5%)
Query 126 IPEHSMQQVLGELLHQPLDYPVLFNPEMNLNVDS--SLFVWWKNIDNFLNLRAQFKGVQG 183
IPE ++++ +L +P + + P + D L+ + + LN A +
Sbjct 223 IPESALRRSFEDLTGRPYVHEFVL-PATCFSQDDVQGLYQTLRQAERDLNSAAS----KA 277
Query 184 MQLWSEDYENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICADDL 243
M L ++ Y+ + L + +N + + P L K F+R++ + +DL
Sbjct 278 MPLLAKAYKQLALVKLFSTMPHNLAEAFCQGTSGAAPRQLLKAEAFMRENLTNPVTIEDL 337
Query 244 HRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNH 303
A + L + F+ Y G SP++ L YRL + +K + + SI++LA + F++
Sbjct 338 AAAARCTPRALQRMFRTYRGGSPMSVLCNYRLAAAHGAIK--AGRAGSITELALNLQFSN 395
Query 304 LGRFSQEYRDEFGETPT 320
GRFS Y+ +G +P+
Sbjct 396 PGRFSVLYKSAYGLSPS 412
>P28808 Thermoregulatory protein LcrF [Yersinia pestis]
Length=271
Score = 48.5 bits (114), Expect = 7e-10
Identities = 36/132 (27%), Positives = 63/132 (48%), Gaps = 7/132 (5%)
Query 192 ENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICADDLHRIAGVSK 251
E L+ SQ + LR L N+ E ++ +F+ ++ + R G+
Sbjct 139 EELLLLLAFSSQGTLFLSALRHLGNRPE----ERLQKFMEENYLQGWKLSKFAREFGMGL 194
Query 252 TKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEY 311
T + F YG SP A++ + R+ +++L N K+SI +A + GF+ F+Q Y
Sbjct 195 TTFKELFGTVYGISPRAWISERRILYAHQLLL---NGKMSIVDIAMEAGFSSQSYFTQSY 251
Query 312 RDEFGETPTETK 323
R FG TP++ +
Sbjct 252 RRRFGCTPSQAR 263
>P0C2V5 Virulence regulon transcriptional activator VirF [Yersinia
enterocolitica]
Length=271
Score = 47.8 bits (112), Expect = 1e-09
Identities = 36/132 (27%), Positives = 63/132 (48%), Gaps = 7/132 (5%)
Query 192 ENFLIKALLLSQENNYSGMLRALCNQYEPEYLRKICEFIRQHAHENICADDLHRIAGVSK 251
E L+ SQ + LR L N+ E ++ +F+ ++ + R G+
Sbjct 139 EELLLLLAFSSQGALFLSALRHLGNRPE----ERLQKFMEENYLQGWKLSKFAREFGMGL 194
Query 252 TKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRFSQEY 311
T + F YG SP A++ + R+ +++L N K+SI +A + GF+ F+Q Y
Sbjct 195 TTFKELFGTVYGISPRAWISERRILYAHQLLL---NGKMSIVDIAMEAGFSSQSYFTQSY 251
Query 312 RDEFGETPTETK 323
R FG TP++ +
Sbjct 252 RRRFGCTPSQAR 263
>P77379 RCS-specific HTH-type transcriptional activator RclR [Escherichia
coli (strain K12)]
Length=284
Score = 41.2 bits (95), Expect = 2e-07
Identities = 27/87 (31%), Positives = 44/87 (51%), Gaps = 3/87 (3%)
Query 241 DDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWG 300
+ L IA +S+ Q F+ GT+PLA L K RLQ ++ S + L + +A G
Sbjct 197 ESLASIAHMSRASFAQLFRDVSGTTPLAVLTKLRLQIAAQMF---SRETLPVVVIAESVG 253
Query 301 FNHLGRFSQEYRDEFGETPTETKHKIK 327
+ F + + EFG TP E + +++
Sbjct 254 YASESSFHKAFVREFGCTPGEYRERVR 280
Score = 16.9 bits (32), Expect = 9.9
Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 27 ICGEHRLETSCR 38
+CG RL+ S R
Sbjct 88 VCGTLRLQHSAR 99
>G3XCU2 HTH-type transcriptional regulator ArgR [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=329
Score = 40.8 bits (94), Expect = 3e-07
Identities = 25/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query 236 ENICADDLHRIAGVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKL 295
E + D++ + VS+ +L + F+ Y P + + RL + ++L +S SI ++
Sbjct 226 EPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNRARQMLMQTSK---SIIQI 282
Query 296 AYDWGFNHLGRFSQEYRDEFGETPTETKHK 325
GF+ FS YR+ FG TP E +++
Sbjct 283 GLSCGFSSGPHFSSAYRNFFGVTPREDRNQ 312
>Q47129 Transcriptional activator FeaR [Escherichia coli (strain
K12)]
Length=301
Score = 35.4 bits (80), Expect = 1e-05
Identities = 20/80 (25%), Positives = 39/80 (49%), Gaps = 2/80 (3%)
Query 248 GVSKTKLYQEFQHYYGTSPLAFLRKYRLQQIYKILKSSSNKKLSISKLAYDWGFNHLGRF 307
G+S LY+ F G ++R RL ++ +++ + ++ + + WGF+ F
Sbjct 224 GMSVRSLYRMFADK-GLVVAQYIRNRRLDFCADAIRHAADDE-KLAGIGFHWGFSDQSHF 281
Query 308 SQEYRDEFGETPTETKHKIK 327
S ++ FG TP E + K +
Sbjct 282 STVFKQRFGMTPGEYRRKFR 301
Score = 17.3 bits (33), Expect = 7.6
Identities = 6/19 (32%), Positives = 11/19 (58%), Gaps = 0/19 (0%)
Query 37 CRDKLDFHYEGIRLPHKRL 55
C ++LD ++L H+ L
Sbjct 137 CAERLDADLPMVQLSHRLL 155
Lambda K H a alpha
0.322 0.137 0.419 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1153152
Database: 4968cce90b4235a9d59c1075dd2c6b40.SwissProt.fasta
Posted date: May 20, 2024 9:17 AM
Number of letters in database: 4,694
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
