BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 6c0bd6e91fabc09057590bd4414b1c46.SwissProt.fasta
           1 sequences; 1,101 total letters



Query= ACIAD2684

Length=1274
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9I755 Type VI secretion system component TssM1 [Pseudomonas aeru...  364     4e-111


>Q9I755 Type VI secretion system component TssM1 [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=1101

 Score = 364 bits (934),  Expect = 4e-111
 Identities = 288/1128 (26%), Positives = 512/1128 (45%), Gaps = 116/1128 (10%)

Query  90    EELSLIQQQMKESVQLIRKSRLGDKKGNAALYELPWYMVIGNPAAGKSSAIYNSGLKFPF  149
             EEL+ ++Q+M E++ L+++++LG  +    LYELPWY++IG P +GK++A+ NSGL FP 
Sbjct  19    EELATLKQRMDEALALLKRAKLGGSE-RRNLYELPWYVIIGPPGSGKTTALMNSGLDFPL  77

Query  150   EESHQKMVSAGLSGTRNCDWFFSTDGVLLDTAGRYSVYSE----DHSEWLGFLNLLKKNR  205
                       G+ GTRNCDW+F+ + VLLDTAGRY+        D + WLGFL+LLK  R
Sbjct  78    AAQMGAGAIRGVGGTRNCDWWFTDEAVLLDTAGRYTTQDSHAQVDKAAWLGFLDLLKTQR  137

Query  206   PKAPVNGLIVIVSIAELISQSPESSLKLAKNLRARIQDLTEKLEVIVPVYLVFSKMDLIA  265
              + P++G  + +S+++L+  S       A+ +RARIQ+L ++L V  P+Y++ +K DL+ 
Sbjct  138   KRRPIDGAFIAISLSDLLLGSDAERAAHAQAIRARIQELYQQLGVRFPIYVMLTKFDLVP  197

Query  266   GFTEFFECYEAQEYNQAWGATLPYEQ-NSSQNAVDLFEQHYTILYEGLKGVSTTHLSRRH  324
             GF EFF+    +E  Q WG T   +   S++  + +F+  + +L + L    T  L  R 
Sbjct  198   GFMEFFDSLNREERAQVWGMTFALDDGKSAEGPLAVFDSEFALLEQRL----TARLVERL  253

Query  325   AQNISPS----VMTFPLEFKTLKPALRSFVSTLFEDNPYQFQPVFRGFYFTSALQEGIVE  380
              Q   P+    V  FP +F  L+  L  F++ +F+ NPY+ +P+ RG YFTS  QEG   
Sbjct  254   QQERDPARRDLVYGFPQQFAALRECLGEFLNGVFKPNPYEERPLLRGLYFTSGTQEGSPI  313

Query  381   SPMTEQIAQEFHLHPIENSDQQNQHRAHGQNHGYFLKGLFSDVILKDKELVKQHINPAKK  440
               +   +AQ  +L      D+Q+  R  G    YF++ LF +V   ++ LV    NP  +
Sbjct  314   DRLIGSMAQSMNL------DRQHLARQTGTGRSYFIERLFREVAFGERGLV--GTNPKVE  365

Query  441   RKRHIAFIGSLVGVSIIL----GVWVWSYRNNQQLIQDVQADLNKVVQ-LEKVSGQQLST  495
             R+R    IG+L   ++++     VW+ SYR NQ  I  V   ++ + + +E +S      
Sbjct  366   RRRKWLTIGALSATALVVLAVTAVWIASYRANQSYIAAVDQRVDPLARGIESLS----PA  421

Query  496   QLDALLILQERLQQLDEFDEHRPLKFSFGLYQGNHLREQLKTEYLKGIRQIVLTPTQQNI  555
             Q D L +L +     +   +       +GLYQG+ L E+  + Y K +           I
Sbjct  422   QRDVLAVLPQLNAVQNLAGDAPSWAEGYGLYQGDMLGEESASVYRKLL-----------I  470

Query  556   AQYLQRVKGNEETLKANHSNVEIKQVAKTQQYLEPSDSNPQDAYNALKAYLMMSNPQYRE  615
             A +  R+                  V + ++ L  S  +    Y  LKAYLM+ +P + +
Sbjct  471   AVFAPRL------------------VTRIEEQLR-SGGSSDFLYEGLKAYLMLGSPDHYD  511

Query  616   SSHLSDQVTRFWRSWLDANKGQMPRGEMIQKAEQILSYAMTLSSDTQFPVLQADSQLVDQ  675
             +  +   ++  W       +  +PR ++  +  Q L   +    + + P  + D  LV+ 
Sbjct  512   ADFIKAWISLDW-------ERNLPR-DLSPEQRQALHAHLDALLERRPPSARLDQDLVED  563

Query  676   TRQVLLSVIRGMPARDRVYNEIK-MRAAVRYPAVTVTQIVGESSKGIILGSYALP-----  729
              R+ L    + +P   RVY+ +K  R     P   ++   G  +  +       P     
Sbjct  564   LRRQL----QQLPVAQRVYDRVKRQRLPKDVPDFRISDAAGRDAPLVFARKSGKPLTDPL  619

Query  730   -GMFTHKAWTD-YVDQAIEDAANKPTDSKDWVLNSRQSDDLTFSGSPDQIRKQLTALYKQ  787
              G FT++ + + ++  ++  A       + WVL      DL  +G    +   +  LY Q
Sbjct  620   SGFFTYRGYREVFLTASLSQAGT--IAEEQWVLGR----DLNDAGDAANLALDVRRLYFQ  673

Query  788   EYIEEWRKFLNGIHYAKAAQFAQQVKNIDALGEPQNSPIRTLLDRVAIETNWD--NPVVQ  845
             +Y+ +W   L  +         Q    +  L  P  SP R LL+ VA ET+    + +V 
Sbjct  674   DYLRQWDDLLADLTVVPITNVTQAADVLRILSGP-TSPFRKLLEAVARETDLQKGDRLVA  732

Query  846   AELAAPQKGFVAWFKRK---VLNRDDQKLKQQAMAKAQGQISQQYQMFYQLVRKRDDQQN  902
             A++     G V   K++   ++ ++++  ++Q        IS  +     LV K +    
Sbjct  733   AQVKKAADGTVDKLKQRLGSLVGQEEEGAREQPRQVDSDPISAHFAELNSLVSKGEGGNE  792

Query  903   KSLLDEYMESLAQVRSKFNELKNAGEIGPSAMALVKQTINDQNSVFNTTQKIIDEKMSVG  962
              + +D  +E +  +  + + +  AG  G S +   K      N V     ++        
Sbjct  793   PAPIDSLLEDMNALYVQVSAM--AGASGDSLLGDAK------NQVAAAASRVALS-----  839

Query  963   VGELDQQLLQRFLGAPLTQSFDSLIIPAQDEMNKLWVMQAYQPFTTNLSQKYPFNSSASL  1022
               E    ++Q  +   +  +  S++   ++++N  W+      +  +L+ +YP  + +S 
Sbjct  840   -AERQPPVVQGLVKNVVNSTTSSMMGSVRNQLNAAWISDVVSVYRQSLAGRYPIAAGSSR  898

Query  1023  QATSAEIGQIFGENGSIARFVKENLDPLVIRRGYTLTSKTWKDLGISLNPQFVMNFQRYV  1082
              AT  + G  FG  G +  + ++ L P V     T   +      + +NP  +  FQR  
Sbjct  899   DATLEDFGHFFGAGGVMDSYFRQYLQPYVDTSASTWRWQPGAAQKLGINPGVLHTFQRAA  958

Query  1083  APTNGMATGELNQAPAAAPAANQSNFQFYPLQNPQLLS-YSIDIDGQRMTYENGIQQWVN  1141
             A  +        Q            F+  P+     +S + +D+DGQ++TY++G  + V 
Sbjct  959   AIRDAFFRSGGMQPTV--------RFELKPVTMDAAISQFILDLDGQQLTYDHGPSRPVA  1010

Query  1142  FVWPNQGAIPGARITAVDLQGKTHTIFDEPGEYGINRLIDSAQRKEQN  1189
               WP+   +   R+T         +     G +   RL+D +  +  N
Sbjct  1011  MQWPSANGLGVVRLTVTPPPSSGRSGLTLEGPWAWFRLLDQSDLERGN  1058



Lambda      K        H        a         alpha
   0.318    0.132    0.384    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1293258


  Database: 6c0bd6e91fabc09057590bd4414b1c46.SwissProt.fasta
    Posted date:  May 29, 2024  9:08 PM
  Number of letters in database: 1,101
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40