BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: be4ac8e50044b40456cec898c69401d6.SwissProt.fasta
           2 sequences; 2,253 total letters



Query= ACIAD2687

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9I744 Type VI secretion system component TssF1 [Pseudomonas aeru...  201     2e-60
A8W3G9 Protein TIC 214 [Cuscuta exaltata]                             40.0    8e-07


>Q9I744 Type VI secretion system component TssF1 [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 
14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=619

 Score = 201 bits (512),  Expect = 2e-60
 Identities = 164/611 (27%), Positives = 270/611 (44%), Gaps = 42/611 (7%)

Query  5    LLPYYEKQLQEFSQQSREFALKYPKIAQRLALNQEQIDDPHIERLIQAFSLIAARIDKKI  64
            LL YY ++LQ   + + EFA ++PKIA RL+L+  +  DP++ERL++ F+ + AR+  K+
Sbjct  5    LLEYYNQELQHIRESAAEFAEEFPKIAGRLSLSGFECADPYVERLLEGFAYLTARVQLKL  64

Query  65   ADSYDFFTRSLFEVMFPQYLRHFPACSVVSFEDLQKLKQLTEPHIIPKQTKLKSRSFKGV  124
               Y  FT +L E+ +P YL   P+ +VV          L+    I +   L+ +     
Sbjct  65   DAEYPTFTHNLLEIAYPHYLAPTPSMTVVQLRPDPNEGALSSGFSIERGASLRGQLGPDD  124

Query  125  Q--CEFNTAYEVRLLPISLVKLEF--------KTLQHTHAHLTQNASLNFHFSLLNPLQS  174
            Q  CE+ TA+ V L P+ + + ++          L  +         +        P  S
Sbjct  125  QTACEYRTAHPVTLWPLEVAQADYFGNPAAVLGRLAASEPRAKAGLRIRLRSGAGIPFDS  184

Query  175  WLYQEKLPIYLDAISNFPLQLLDQIFKKETRFSLRVGHQSFDINNPFEMM---GFSEAEA  231
             L  + LP+YL      P +L +Q+        +R    ++    P   +   GF + +A
Sbjct  185  -LSLDALPLYLHGADEQPYRLYEQLLGNACAVFVRAPDNAWVERLPTSSLRARGFDDEDA  243

Query  232  LLPLDQHTHHAYRLLMEYFCFPEKFNYLNLNLSQLKAFITTQTEFELLIHLKLNLNDPAS  291
            LLP+       YRLL EYF  P +F ++  +            E EL++     L     
Sbjct  244  LLPVVPRAFQGYRLLQEYFALPARFLFVEFSGLNRALRRCHGEELELVV-----LFGKHD  298

Query  292  VRNYSELDVENFKLFTTPVINLFEKQAEPQKINHQQLEYPLITDAHYPDAYQVYSIIDMQ  351
             R    +D E    F TP INLF ++ +   ++ +  E+ +I D   P  ++V+S+   Q
Sbjct  299  QRLEGTVDAEQLVPFCTPAINLFPRRCDRIHLSDRVNEHHVIVDRTRPLDFEVHSL--QQ  356

Query  352  MIREKTHQEQAIVPVLPFFAM---SHYHDHQVKFFYALHQQKLTKHH-----------VE  397
            +    +  EQ   P  PF+A+   + Y   Q  F      + L+               E
Sbjct  357  VSGHGSGPEQ---PFQPFYAVRDPARYGREQAYFRVRREPRVLSSKQRRKGPRSTYVGSE  413

Query  398  TRFSIVSKQLEPYNTTSDFVSTQLLCSNRDLP-YEVLGQTHTSLNLNDSNLARRAVVLKR  456
            T  ++V     PY      +    LC+NRDLP +  +G   +   L DS    +   L  
Sbjct  414  TFVALVDANQAPYRHDLRQLGIAALCTNRDLPLFMPIGAHKSDFTLEDSAPVMQVRCLAG  473

Query  457  PTLPYQFEQHKNEQWRIISHLSLNTLALM-KGESLSHLKELLALYNLPRSKENHLLIDAI  515
            P+ P     H    WR+IS LSLN L+L  +G+  + L+ELL LY         L I+ +
Sbjct  474  PSRPRASRAHDASAWRLISQLSLNYLSLAERGQGAAALRELLRLYGDSGDPALQLQIEGL  533

Query  516  KQLNFS-LTHKLVEAKPFPMFVRGVKAEISIDTSVFRGHSVYIFSQLVSHILNLKVQMNS  574
            ++++    T +L    P  +F RG++  +  D + FRG  V++   +    L   V +NS
Sbjct  534  REVSSKPCTRRLPMPGPI-VFGRGLEITLDFDENAFRGTGVFLLGAVFERFLARYVSINS  592

Query  575  FVDVVIRDSVR  585
            F + V+R   R
Sbjct  593  FTETVLRTGER  603


>A8W3G9 Protein TIC 214 [Cuscuta exaltata]
Length=1634

 Score = 40.0 bits (92),  Expect = 8e-07
 Identities = 39/132 (30%), Positives = 58/132 (44%), Gaps = 18/132 (14%)

Query  163   NFHFSLLNP--LQSWLYQEKLPIYLDAISNFPLQLLDQIFKKETR-FSLRVGHQSFDINN  219
             N HFSL     ++SW+           I N+  QL+DQI KKE   FSL + HQ+ +IN 
Sbjct  1243  NIHFSLRKKVDIESWVAVNTSSNKDSTIGNYNYQLIDQIDKKEKELFSLPI-HQNTEINR  1301

Query  220   P------FEMMGFSEAEALLPLDQHTHHAYRLLMEYF--------CFPEKFNYLNLNLSQ  265
             P       + MG +E     P+       +   +  F          P K   LN NLS+
Sbjct  1302  PNSTNSLVDWMGMNEQILNRPITNLELWFFPEFVWLFNVYKTKPWIIPSKILLLNSNLSE  1361

Query  266   LKAFITTQTEFE  277
             + +   ++T+ E
Sbjct  1362  IDSQQKSETDSE  1373


 Score = 17.7 bits (34),  Expect = 5.8
 Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)

Query  164   FHFSLLNPLQSW  175
             F FSL++  Q W
Sbjct  1107  FWFSLISQKQKW  1118


 Score = 17.3 bits (33),  Expect = 7.6
 Identities = 9/37 (24%), Positives = 15/37 (41%), Gaps = 0/37 (0%)

Query  12   QLQEFSQQSREFALKYPKIAQRLALNQEQIDDPHIER  48
            ++ +FS  S    L  P       +N  +  DP+  R
Sbjct  464  EISDFSTLSSNLNLTDPDQKTEFLVNPIETHDPNFIR  500



Lambda      K        H        a         alpha
   0.324    0.137    0.398    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1203677


  Database: be4ac8e50044b40456cec898c69401d6.SwissProt.fasta
    Posted date:  May 9, 2024  8:00 AM
  Number of letters in database: 2,253
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40