BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 5bca042ecc7264872d134c449b772494.SwissProt.fasta
           1 sequences; 498 total letters



Query= ACIAD2690

Length=499
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9I748 Type VI secretion system sheath protein TssC1 [Pseudomonas...  467     6e-166


>Q9I748 Type VI secretion system sheath protein TssC1 [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=498

 Score = 467 bits (1201),  Expect = 6e-166
 Identities = 234/481 (49%), Positives = 322/481 (67%), Gaps = 6/481 (1%)

Query  20   ENTTLLDSIVEQSRIARNDEEHVRAKNLIGELAKEVMAGTITVSENMTLSIDKRIAEIDA  79
            E T+   S++ Q    + +      +  +  LA+  +  T  +S +   SI+  IA +DA
Sbjct  17   EQTSEFASLLLQEFKPKTERAREAVETAVRTLAEHALEQTSLISNDAIKSIESIIAALDA  76

Query  80   LISAQLSQIMHHEKFQKIESTWRGLYYFCQETPSNPLIKIRMLNTTKKEL---VKDFQGA  136
             ++AQ++ IMHH  FQ++ES WRGL+Y    T ++  +KIR+LN +K EL   +K F+G 
Sbjct  77   KLTAQVNLIMHHADFQQLESAWRGLHYLVNNTETDEQLKIRVLNISKPELHKTLKKFKGT  136

Query  137  TDFDQSTLFKKIYEEEYGSFGGAPYSALIGDFEFDRTPSDMYLLEQISHVAAAAHAPFIS  196
            T +DQS +FKK+YEEEYG FGG PY  L+GD+ FD++P D+ LL +++ ++AA HAPFIS
Sbjct  137  T-WDQSPIFKKLYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGEMAKISAAMHAPFIS  195

Query  197  AADPSMFGLESYTDIDRPRDVSKIFETAEYVQWRSFRDSEDARYVALTMPRVLGRLPYHP  256
            AA P++ G+ S+ ++  PRD++KIF T EY  WRS R+SED+RY+ LTMPR L RLPY  
Sbjct  196  AASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIGLTMPRFLARLPYGA  255

Query  257  KEGTATEGFNFIEDVTGQDHNEYLWMNAAYAFGTRLTNAFDLHGWCAAIRGVEGGGLVEG  316
            K     E F F E+  G D ++Y W N+AYA    +  +F L+GWC+ IRGVE GG V+G
Sbjct  256  KTDPVEE-FAFEEETDGADSSKYAWANSAYAMAVNINRSFKLYGWCSRIRGVESGGEVQG  314

Query  317  LPVHTFKTHDGEVAFKCPTEIAITDRREKELSDLGFIPLVHCKNTDYAAFFGAQSTQKPK  376
            LP HTF T DG V  KCPTEIAI+DRRE EL+  GF+PL+H KNTD+AAF GAQS QKP 
Sbjct  315  LPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPA  374

Query  377  KYDSDTANANSALSSQIQYIMAVSRIAHYLKAMMRDKVGSFASAGNVEAFLNEWLSQYVL  436
            +YD   A AN+ L++++ Y+ A  R AHYLK ++RDK+GSF     ++ +L +W+  YV 
Sbjct  375  EYDDPDATANANLAARLPYLFATCRFAHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVD  434

Query  437  LDDGASQE-AKAQYPLREASVKVVEDPAQPGHYKSVVFLRPHFQLDELSVSLRLVTELPQ  495
             D   S E  KAQ+PL  A V V E    PG+Y S  FLRPH+QL+ L+VSLRLV++LP 
Sbjct  435  GDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSKFFLRPHYQLEGLTVSLRLVSKLPS  494

Query  496  S  496
            +
Sbjct  495  A  495



Lambda      K        H        a         alpha
   0.319    0.133    0.389    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 215760


  Database: 5bca042ecc7264872d134c449b772494.SwissProt.fasta
    Posted date:  May 9, 2024  11:38 AM
  Number of letters in database: 498
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40