BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 644ea2ac5184c40de93711ff55d13f0e.SwissProt.fasta
           8 sequences; 4,331 total letters



Query= ACIAD2691

Length=170
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9I749 Type VI secretion system sheath protein TssB1 [Pseudomonas...  120     2e-38
Q8TXI4 DNA double-strand break repair Rad50 ATPase [Methanopyrus ...  38.5    4e-07
Q60389 Uncharacterized protein MJ0079 [Methanocaldococcus jannasc...  36.2    2e-06
Q6A8L0 Probable transcriptional regulatory protein PPA1157 [Cutib...  34.7    6e-06
A5ILG0 DNA mismatch repair protein MutS [Thermotoga petrophila (s...  34.7    8e-06
Q8D1W6 Aspartate carbamoyltransferase regulatory chain [Wiggleswo...  33.5    9e-06
B1LAW3 DNA mismatch repair protein MutS [Thermotoga sp. (strain R...  33.9    1e-05
Q7U3T3 Chaperone protein ClpB 2 [Parasynechococcus marenigrum (st...  23.9    0.027


>Q9I749 Type VI secretion system sheath protein TssB1 [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=172

 Score = 120 bits (301),  Expect = 2e-38
 Identities = 61/162 (38%), Positives = 101/162 (62%), Gaps = 1/162 (1%)

Query  3    MAKRESVQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDFSAASELEKTKLKDK  62
            M    S QK + R R PRVQ+ YDVE+   ++  +LPFV+GVM D +      +  + D+
Sbjct  1    MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADR  60

Query  63   KFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPL  122
            KF+ +D+DN D  +++M PR AF+V N LT E G +++D+TF SM DFSP  + ++V+ L
Sbjct  61   KFLEIDVDNFDARLKAMKPRVAFNVPNVLTGE-GNLSLDITFESMDDFSPAAVARKVDSL  119

Query  123  RKLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSA  164
             KL+EAR +L +L   +      E+++ + +K+   ++ L++
Sbjct  120  NKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALAS  161


>Q8TXI4 DNA double-strand break repair Rad50 ATPase [Methanopyrus 
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)]
Length=876

 Score = 38.5 bits (88),  Expect = 4e-07
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 14/160 (9%)

Query  9    VQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDF-SAASELEKTKLKDKKFINV  67
            ++ K++ ++  R  L   VE  +GKEA+     +  +GD  S   ELE  + + ++ I  
Sbjct  249  LENKIESLKGRRDDLRKLVE--EGKEAER---ELQRLGDVPSKVRELENEEAELRRRIE-  302

Query  68   DLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVE  127
            +L N+ D ++S+  R    +E+   E  G   V      ++D +     + VE   K+VE
Sbjct  303  ELRNLLDDLRSLRNR----LESAEEELEG---VKRELEELKDEAGVDPERLVEFKDKIVE  355

Query  128  ARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEVD  167
            A ERL DLR +     +LE + DE+ +  D+   L +E +
Sbjct  356  ASERLRDLRREEELKRKLEKVSDELSELGDREETLQSEYE  395


 Score = 30.0 bits (66),  Expect = 3e-04
 Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 9/123 (7%)

Query  53   ELEKTKLKDKKFINVDLDNIDDVMQSM--APRAAFDVENTLTEEGGRM----NVDLTFNS  106
            ELE+T  + +K I      ++DV + +         V   L E  G +    N++     
Sbjct  558  ELERTLDRCEKVIGRTPSGVEDVEEELRRLEEERDHVGQKLREAEGELERYHNLEEKVKR  617

Query  107  MQDFSPE--QITQQVEPLRKLVEARER-LTDLRNKISNNERLEDLLDEVLKNTDQVRKLS  163
             ++   E  +I + +E  +  +E  ER L  LR +  + +RLE+ L+ V K  ++VR   
Sbjct  618  AREARKELKRIERDLEDAKGRLEQVERNLEGLRERYGSEDRLEEELESVEKKYERVRDKL  677

Query  164  AEV  166
            +EV
Sbjct  678  SEV  680


 Score = 25.4 bits (54),  Expect = 0.009
 Identities = 23/81 (28%), Positives = 42/81 (52%), Gaps = 11/81 (14%)

Query  92   TEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEA-----RERLTDLRNKISNNERLE  146
            T E  +  VD T   + +F  ++  +Q   L ++ EA     RER+ DL+      +R+E
Sbjct  149  TREERKRIVDRTLG-LAEF--KKAREQAHELLRVAEAKLETFRERVRDLKGSKKELKRVE  205

Query  147  DLLDEVLKNTDQVRKLSAEVD  167
              L+E+ +   +V++L  EV+
Sbjct  206  RELEELKR---EVKELEPEVE  223


 Score = 25.0 bits (53),  Expect = 0.011
 Identities = 19/61 (31%), Positives = 31/61 (51%), Gaps = 8/61 (13%)

Query  113  EQITQQVEPLRKLVEA-RERLTDLRNKISNNER-------LEDLLDEVLKNTDQVRKLSA  164
            E++ ++V+ L   VE  +ERL +LR      ER       LE+ ++ +    D +RKL  
Sbjct  209  EELKREVKELEPEVEELKERLNELREAKREFERLEGELRLLENKIESLKGRRDDLRKLVE  268

Query  165  E  165
            E
Sbjct  269  E  269


 Score = 24.3 bits (51),  Expect = 0.020
 Identities = 16/55 (29%), Positives = 28/55 (51%), Gaps = 1/55 (2%)

Query  113  EQITQQVEPLRKLVEARERL-TDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEV  166
            EQ+ + +E LR+   + +RL  +L +     ER+ D L EV    + + K   E+
Sbjct  640  EQVERNLEGLRERYGSEDRLEEELESVEKKYERVRDKLSEVKGRLNGMEKRREEL  694


 Score = 23.5 bits (49),  Expect = 0.036
 Identities = 38/184 (21%), Positives = 82/184 (45%), Gaps = 39/184 (21%)

Query  3    MAKRESVQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDFSAASELEKTKLKDK  62
            + + E +++KL+++     +L+   E+GD +E  +  +            EL++ ++K+K
Sbjct  363  LRREEELKRKLEKVSD---ELS---ELGDREETLQSEYEELQERLDEIQGELKEIRVKEK  416

Query  63   KFINVDLDNIDDVMQS--------------MAPRAAFDVENTLTEEGGRMNVDLTFNSMQ  108
            +     L+ I+ + ++               A +   D E  L    GR          +
Sbjct  417  EL----LERIESLREAEGECPVCLRKLPRERAEKLLRDAEKELERLQGR---------EE  463

Query  109  DFSPE--QITQQVEPLRKLVE-ARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAE  165
            D   E  ++  ++E +R+ +E  +ER+  LR +    E LE  L+E+ +  +++  LS E
Sbjct  464  DLRKERRELKDRLESVRRELEGTKERMWRLRER---REELERELEEIEELKEELADLSRE  520

Query  166  VDHE  169
            +  E
Sbjct  521  LGVE  524


 Score = 22.7 bits (47),  Expect = 0.064
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 22/100 (22%)

Query  70   DNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEAR  129
            D +++ ++S+  +    V + L+E  GR+N         +   E++ +QV   RK  EA+
Sbjct  657  DRLEEELESVEKKYE-RVRDKLSEVKGRLNG-------MEKRREELKKQV---RKYREAK  705

Query  130  ERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEVDHE  169
            ER           ERLE ++ EVL    +V + S +V  E
Sbjct  706  ER----------KERLERVV-EVLSLCKEVFRYSRDVARE  734


 Score = 20.4 bits (41),  Expect = 0.35
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 26/133 (20%)

Query  55   EKTKLKDK-KFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPE  113
            E+ +LKD+ + +  +L+   + M  +  R   ++E  L E      ++     + D S E
Sbjct  468  ERRELKDRLESVRRELEGTKERMWRLRERRE-ELERELEE------IEELKEELADLSRE  520

Query  114  QITQQ--VEPLRKL-VEARERLTDLRNKISNNERLEDLLDEVLKNTDQV-----------  159
               ++  +  LR L V A   L DL  +  +  RLE  L+  L   ++V           
Sbjct  521  LGVEEDRLPELRDLAVRAESLLRDLERRRGDVLRLEKELERTLDRCEKVIGRTPSGVEDV  580

Query  160  ----RKLSAEVDH  168
                R+L  E DH
Sbjct  581  EEELRRLEEERDH  593


 Score = 19.6 bits (39),  Expect = 0.62
 Identities = 7/11 (64%), Positives = 10/11 (91%), Gaps = 0/11 (0%)

Query  7    ESVQKKLQRIR  17
            ESV+KK +R+R
Sbjct  664  ESVEKKYERVR  674


 Score = 18.5 bits (36),  Expect = 1.5
 Identities = 6/14 (43%), Positives = 11/14 (79%), Gaps = 0/14 (0%)

Query  139  ISNNERLEDLLDEV  152
            ++++E LED  DE+
Sbjct  846  VTHDEELEDAADEL  859


>Q60389 Uncharacterized protein MJ0079 [Methanocaldococcus jannaschii 
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / 
NBRC 100440)]
Length=380

 Score = 36.2 bits (82),  Expect = 2e-06
 Identities = 25/98 (26%), Positives = 47/98 (48%), Gaps = 11/98 (11%)

Query  70   DNIDDVMQSMAPRAAFDVENTLTEEG-------GRMNVDLTFNSMQDFSP--EQITQQVE  120
            D+IDD++  +  +  FD+ N   E+          +  +L +  ++      +   + +E
Sbjct  273  DDIDDIL--IVSKVIFDITNKYAEQVLDKAEIIKNLKNELKYIDIKKIGECKKDYNKLIE  330

Query  121  PLRKLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQ  158
             L K+   R  L  +RN+   N+R  D +DEV+K TD+
Sbjct  331  ILCKMAYIRLELKKIRNEAIINKRKTDFIDEVIKETDE  368


>Q6A8L0 Probable transcriptional regulatory protein PPA1157 [Cutibacterium 
acnes (strain DSM 16379 / KPA171202)]
Length=264

 Score = 34.7 bits (78),  Expect = 6e-06
 Identities = 36/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)

Query  2    TMAKRESVQKKLQRIRPPRVQLTYDVEIGDGKEAKELPFVVGVMGDFSAASELEKTKLKD  61
            TMA   SVQ+  QR     V  TY+VE G   E +E+              +L +  +  
Sbjct  124  TMADGGSVQRLFQRKGVVSVSKTYEVEEGRKTETREVD-----------EDQLMEATIDA  172

Query  62   KKFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQ-DFSPEQITQQVE  120
            +    VD   + +++    P A  DV   +  +G  ++ D    S + DF+     +   
Sbjct  173  EPEDIVDEGEVFEIISD--PSAVVDVRKAV--QGAGIDYDSAEVSFKPDFTQRVELEDAR  228

Query  121  PLRKLVEARERLTDLRNKISN  141
             L ++++A E L D++N  SN
Sbjct  229  KLYRILDALEDLDDVQNVFSN  249


 Score = 22.7 bits (47),  Expect = 0.054
 Identities = 24/74 (32%), Positives = 33/74 (45%), Gaps = 6/74 (8%)

Query  82   RAAFDVENTLTEEGGRM----NVDLTFNSMQDFSPEQITQQVEPLRKLVEARERLTDLRN  137
            RA  DV   +T  GG M    +V   F      S  + T +VE  RK  E RE   D   
Sbjct  109  RAVSDVRVAVTRNGGTMADGGSVQRLFQRKGVVSVSK-TYEVEEGRK-TETREVDEDQLM  166

Query  138  KISNNERLEDLLDE  151
            + + +   ED++DE
Sbjct  167  EATIDAEPEDIVDE  180


 Score = 16.2 bits (30),  Expect = 7.4
 Identities = 7/16 (44%), Positives = 11/16 (69%), Gaps = 0/16 (0%)

Query  130  ERLTDLRNKISNNERL  145
            E LTD RN+  ++ R+
Sbjct  101  ECLTDNRNRAVSDVRV  116


>A5ILG0 DNA mismatch repair protein MutS [Thermotoga petrophila 
(strain ATCC BAA-488 / DSM 13995 / JCM 10881 / RKU-1)]
Length=793

 Score = 34.7 bits (78),  Expect = 8e-06
 Identities = 27/81 (33%), Positives = 41/81 (51%), Gaps = 3/81 (4%)

Query  85   FDV-ENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEARERLTDLRNKISNNE  143
            FDV  NT T  G R+      + + D   +QI +++E + KLV  R  L +LR+ +SN  
Sbjct  272  FDVLNNTETPMGARLLKKWILHPLVD--RKQIEERLETVEKLVSDRMNLEELRDLLSNVR  329

Query  144  RLEDLLDEVLKNTDQVRKLSA  164
             +E ++  V  N    R L A
Sbjct  330  DVERIVSRVEYNRSVPRDLVA  350


 Score = 23.5 bits (49),  Expect = 0.036
 Identities = 12/43 (28%), Positives = 26/43 (60%), Gaps = 5/43 (12%)

Query  124  KLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEV  166
            K++ A+ER+ +L  ++  N     + +EV K+ + + K+S E+
Sbjct  489  KIMAAKERIEELEKELFKN-----VCEEVKKHKEILLKISEEL  526


 Score = 20.8 bits (42),  Expect = 0.26
 Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 14/113 (12%)

Query  62   KKFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPE-------Q  114
            K+  + +LD   D+++    R   + E    +  G   + + +N +  +  E       +
Sbjct  403  KRGFSPELDEYRDLLEHAEERLK-EFEEKERKRTGIQKLKVGYNQVFGYYIEVTKANLDK  461

Query  115  ITQQVEPLRKLVEARERLT----DLRNKI-SNNERLEDLLDEVLKNT-DQVRK  161
            I    E  + LV +   +T    +   KI +  ER+E+L  E+ KN  ++V+K
Sbjct  462  IPDDYERKQTLVNSERFITPELKEFETKIMAAKERIEELEKELFKNVCEEVKK  514


>Q8D1W6 Aspartate carbamoyltransferase regulatory chain [Wigglesworthia 
glossinidia brevipalpis]
Length=153

 Score = 33.5 bits (75),  Expect = 9e-06
 Identities = 23/70 (33%), Positives = 39/70 (56%), Gaps = 3/70 (4%)

Query  97   RMNVDLTFN-SMQDFSPEQITQQVEPLRKLVEARERLTDLRNKISNNERLEDL--LDEVL  153
            ++ V+  F  ++ D  P Q+  ++  L K +  +ER+T   N  SN ++ +DL  L+ VL
Sbjct  6    KLQVEAIFGGTVIDHIPAQVGLKLLSLFKWLHTKERITMGLNLPSNQQKKKDLIKLENVL  65

Query  154  KNTDQVRKLS  163
             N DQ  +LS
Sbjct  66   LNEDQANQLS  75


>B1LAW3 DNA mismatch repair protein MutS [Thermotoga sp. (strain 
RQ2)]
Length=793

 Score = 33.9 bits (76),  Expect = 1e-05
 Identities = 26/81 (32%), Positives = 41/81 (51%), Gaps = 3/81 (4%)

Query  85   FDV-ENTLTEEGGRMNVDLTFNSMQDFSPEQITQQVEPLRKLVEARERLTDLRNKISNNE  143
            FDV  NT T  G R+      + + D   +QI +++E + +LV  R  L ++RN +SN  
Sbjct  272  FDVLNNTETPMGARLLKKWILHPLVD--RKQIEERLEAVERLVNDRVSLEEMRNFLSNVR  329

Query  144  RLEDLLDEVLKNTDQVRKLSA  164
             +E ++  V  N    R L A
Sbjct  330  DVERIVSRVEYNRSVPRDLVA  350


 Score = 21.6 bits (44),  Expect = 0.15
 Identities = 10/43 (23%), Positives = 26/43 (60%), Gaps = 5/43 (12%)

Query  124  KLVEARERLTDLRNKISNNERLEDLLDEVLKNTDQVRKLSAEV  166
            K++ A+ER+ ++  ++      + + +EV K+ + + KLS ++
Sbjct  489  KIMAAKERIEEMEKEL-----FKSVCEEVKKHKEVLLKLSEDL  526


 Score = 17.7 bits (34),  Expect = 2.6
 Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 6/47 (13%)

Query  115  ITQQVEPLRKLVEARERLTDLR------NKISNNERLEDLLDEVLKN  155
            + + +  LR+ +E   +L ++       NK++  E L DLL   +++
Sbjct  344  VPRDLVALRETLEIIPKLNEILSNFGVFNKLAFPEELVDLLRRAIED  390


>Q7U3T3 Chaperone protein ClpB 2 [Parasynechococcus marenigrum 
(strain WH8102)]
Length=900

 Score = 23.9 bits (50),  Expect = 0.027
 Identities = 36/184 (20%), Positives = 75/184 (41%), Gaps = 33/184 (18%)

Query  2    TMAKRESVQKKLQR--IRPPRVQLTYDVEIGDGKEAKELPFVVGVMGD-FSAASELEKTK  58
            T+ K  ++ ++ Q+  IR P ++L+ ++  G  +E  EL   V +  +    A+ L    
Sbjct  358  TVEKDPALNRRFQQVLIREPDLELSLEILRGL-RERYELHHGVTITDEAIQTANRLADRY  416

Query  59   LKDKKFINVDLDNIDDVMQSMAPRAAFDVENTLTEEGGRMNVDLTFNSMQDFSPEQITQQ  118
            + D+   +  +D ID+    +        +     E     V+L   + ++ +PE+    
Sbjct  417  ISDRCLPDKAIDLIDEAAAQLKIEVTSKPQVVEEAEADLRRVELALLAAEE-APEE----  471

Query  119  VEPLRKLVEARERLTDLRNKISNNERLEDL-------------LDEVLKNTDQVRKLSAE  165
                       ER+   R ++  + RL+DL             L ++L+  + +R   AE
Sbjct  472  -----------ERIQLQRQRLEVSSRLDDLRRRWQEERTQLEELGQLLQQDEDLRHAIAE  520

Query  166  VDHE  169
             + E
Sbjct  521  AERE  524


 Score = 16.9 bits (32),  Expect = 4.5
 Identities = 7/17 (41%), Positives = 11/17 (65%), Gaps = 0/17 (0%)

Query  143  ERLEDLLDEVLKNTDQV  159
            ERL  +L+EV ++   V
Sbjct  295  ERLRSVLEEVSRSDSGV  311



Lambda      K        H        a         alpha
   0.317    0.134    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 521430


  Database: 644ea2ac5184c40de93711ff55d13f0e.SwissProt.fasta
    Posted date:  May 8, 2024  9:33 AM
  Number of letters in database: 4,331
  Number of sequences in database:  8



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40