BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 69d5522a597d2f8182a2132988b4f620.SwissProt.fasta
           1 sequences; 3,209 total letters



Query= ACIAD2707

Length=55
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

B3BM48 tRNA nuclease CdiA [Escherichia coli O157:H7 (strain EC869)]   43.9    1e-10


>B3BM48 tRNA nuclease CdiA [Escherichia coli O157:H7 (strain EC869)]
Length=3209

 Score = 43.9 bits (102),  Expect = 1e-10
 Identities = 18/36 (50%), Positives = 26/36 (72%), Gaps = 0/36 (0%)

Query  2     DWIKEIQPLLKGTYIPKSFEMATNTRNVWIHPSSTR  37
             D IK  QP + GT IPKSFE+  N + VW++P++T+
Sbjct  3104  DSIKATQPAIPGTSIPKSFELHVNGQTVWVNPNATK  3139



Lambda      K        H        a         alpha
   0.329    0.142    0.459    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 85887


  Database: 69d5522a597d2f8182a2132988b4f620.SwissProt.fasta
    Posted date:  May 20, 2024  8:43 AM
  Number of letters in database: 3,209
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40