BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 60582e25a4634e5024d2197f0a6aa7ae.TrEMBL.fasta
9 sequences; 10,906 total letters
Query= ACIAD2714
Length=89
Score E
Sequences producing significant alignments: (Bits) Value
A0A7G2SFC2 Uncharacterized protein [Acinetobacter sp] 173 2e-61
Q6F900 Uncharacterized protein [Acinetobacter baylyi (strain ATCC... 173 2e-61
A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter berezin... 84.3 1e-23
A0A2U3N2S5 Putative deoxyribonuclease RhsA [Acinetobacter stercoris] 73.6 6e-20
A0A7H2WIG5 RHS repeat protein [Acinetobacter seifertii] 50.1 1e-11
A0A836MJB8 RHS repeat protein [Acinetobacter nosocomialis] 48.9 3e-11
A0A334NVA3 RHS repeat protein [Acinetobacter nosocomialis] 48.9 3e-11
N9GQC3 RHS repeat-associated core domain-containing protein [Acin... 42.0 8e-09
A0A8E1Z4Q1 RHS repeat protein [Acinetobacter haemolyticus] 42.0 8e-09
>A0A7G2SFC2 Uncharacterized protein [Acinetobacter sp]
Length=88
Score = 173 bits (438), Expect = 2e-61
Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)
Query 1 VRLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN 60
+RLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN
Sbjct 1 MRLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN 60
Query 61 DQRSMQQMNMQLNQQLLNQQYQMKSQFS 88
DQRSMQQMNMQLNQQLLNQQYQMKSQFS
Sbjct 61 DQRSMQQMNMQLNQQLLNQQYQMKSQFS 88
>Q6F900 Uncharacterized protein [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=88
Score = 173 bits (438), Expect = 2e-61
Identities = 87/88 (99%), Positives = 88/88 (100%), Gaps = 0/88 (0%)
Query 1 VRLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN 60
+RLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN
Sbjct 1 MRLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN 60
Query 61 DQRSMQQMNMQLNQQLLNQQYQMKSQFS 88
DQRSMQQMNMQLNQQLLNQQYQMKSQFS
Sbjct 61 DQRSMQQMNMQLNQQLLNQQYQMKSQFS 88
>A0A833U1N0 Putative deoxyribonuclease RhsC [Acinetobacter bereziniae]
Length=1513
Score = 84.3 bits (207), Expect = 1e-23
Identities = 42/80 (53%), Positives = 55/80 (69%), Gaps = 0/80 (0%)
Query 1 VRLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN 60
V +AKT LP A + QK + + N TNK RE+ST AG V+TGNL GK+ST+L+ SYN
Sbjct 1387 VHVAKTVLPESATLMQKASSFGANLATNKTREFSTTAGFVITGNLFVGKMSTNLIFGSYN 1446
Query 61 DQRSMQQMNMQLNQQLLNQQ 80
DQR+ ++MN Q+ QQ QQ
Sbjct 1447 DQRANERMNQQIAQQQAYQQ 1466
Score = 16.5 bits (31), Expect = 6.3
Identities = 7/17 (41%), Positives = 9/17 (53%), Gaps = 0/17 (0%)
Query 46 TAGKISTSLMLSSYNDQ 62
T G S S +YND+
Sbjct 1128 TVGDGSASQFYMAYNDK 1144
>A0A2U3N2S5 Putative deoxyribonuclease RhsA [Acinetobacter stercoris]
Length=1494
Score = 73.6 bits (179), Expect = 6e-20
Identities = 36/75 (48%), Positives = 47/75 (63%), Gaps = 0/75 (0%)
Query 1 VRLAKTTLPTGAPISQKLTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYN 60
V +AKT L A + QK W N TNK RE++T AG V+T NL K S +L +SSYN
Sbjct 1371 VHVAKTALSENATLMQKAANWGGNLATNKTREFTTNAGFVITSNLLVSKTSANLAISSYN 1430
Query 61 DQRSMQQMNMQLNQQ 75
+QR++ +MN QL Q
Sbjct 1431 EQRAIARMNQQLAYQ 1445
Score = 24.6 bits (52), Expect = 0.010
Identities = 16/67 (24%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query 23 NNAYTNKVREYSTMAGLVVTGNLTAGKISTSLMLSSYNDQRSMQQMNM-QLNQQLLNQQY 81
N ++N+ +S + L TG +T +TS +YN Q + Q +L++ N +
Sbjct 823 NTTHSNRNCTHSNIDSLGRTGGITCSVANTSDPALAYNYQYAYDQSRFGRLDKVTSNAAF 882
Query 82 QMKSQFS 88
+ +Q++
Sbjct 883 GVDTQYT 889
>A0A7H2WIG5 RHS repeat protein [Acinetobacter seifertii]
Length=1561
Score = 50.1 bits (118), Expect = 1e-11
Identities = 25/74 (34%), Positives = 43/74 (58%), Gaps = 8/74 (11%)
Query 2 RLAKTTLPTGAPISQK--------LTKWINNAYTNKVREYSTMAGLVVTGNLTAGKISTS 53
+ A T +P G + ++ + + NK+RE +T AGLV+TGN+ AGK +T+
Sbjct 1420 KAAPTIIPAGTSVVKRWGLKGLNAINNMAKTSKINKIREVTTPAGLVITGNIIAGKTTTN 1479
Query 54 LMLSSYNDQRSMQQ 67
L+L+ N+Q S ++
Sbjct 1480 LILNDINEQSSARR 1493
Score = 17.3 bits (33), Expect = 3.5
Identities = 11/40 (28%), Positives = 20/40 (50%), Gaps = 3/40 (8%)
Query 35 TMAGLVVTGNLTAGKISTSLMLSSYNDQRSMQQMNMQLNQ 74
T++ +V T G I+ + SY+ S+ Q+ LN+
Sbjct 644 TISSVVTGSGSTTGTITGKTVTFSYD---SLGQLVGSLNE 680
>A0A836MJB8 RHS repeat protein [Acinetobacter nosocomialis]
Length=1561
Score = 48.9 bits (115), Expect = 3e-11
Identities = 29/77 (38%), Positives = 46/77 (60%), Gaps = 14/77 (18%)
Query 2 RLAKTTLPTGAPISQKLTKW-------INN----AYTNKVREYSTMAGLVVTGNLTAGKI 50
+ A T +P G + L +W INN + NK+RE +T AGLV+TGN+ AGK
Sbjct 1420 KAAPTIIPAGTSV---LKRWGLKGLNAINNMAKTSKINKIREVTTPAGLVLTGNIIAGKT 1476
Query 51 STSLMLSSYNDQRSMQQ 67
+T+L+L+ N++ S ++
Sbjct 1477 TTNLILNDINERSSARR 1493
Score = 19.2 bits (38), Expect = 0.76
Identities = 13/47 (28%), Positives = 23/47 (49%), Gaps = 3/47 (6%)
Query 35 TMAGLVVTGNLTAGKISTSLMLSSYNDQRSMQQMNMQLNQQLLNQQY 81
T++ +V TAG I+ + SY+ S+ Q+ LN+ + Y
Sbjct 644 TISSVVTGSGSTAGTITGKTVTFSYD---SLGQLVGSLNEDGEKRSY 687
>A0A334NVA3 RHS repeat protein [Acinetobacter nosocomialis]
Length=1561
Score = 48.9 bits (115), Expect = 3e-11
Identities = 29/77 (38%), Positives = 46/77 (60%), Gaps = 14/77 (18%)
Query 2 RLAKTTLPTGAPISQKLTKW-------INN----AYTNKVREYSTMAGLVVTGNLTAGKI 50
+ A T +P G + L +W INN + NK+RE +T AGLV+TGN+ AGK
Sbjct 1420 KAAPTIIPAGTSV---LKRWGLKGLNAINNMAKTSKINKIREVTTPAGLVLTGNIIAGKT 1476
Query 51 STSLMLSSYNDQRSMQQ 67
+T+L+L+ N++ S ++
Sbjct 1477 TTNLILNDINERSSARR 1493
Score = 18.9 bits (37), Expect = 1.0
Identities = 12/40 (30%), Positives = 21/40 (53%), Gaps = 3/40 (8%)
Query 35 TMAGLVVTGNLTAGKISTSLMLSSYNDQRSMQQMNMQLNQ 74
T++ +V TAG I+ + SY+ S+ Q+ LN+
Sbjct 644 TISSVVTGSGSTAGTITGKTVTFSYD---SLGQLVGSLNE 680
>N9GQC3 RHS repeat-associated core domain-containing protein [Acinetobacter
haemolyticus CIP 64.3 = MTCC 9819]
Length=1477
Score = 42.0 bits (97), Expect = 8e-09
Identities = 18/37 (49%), Positives = 29/37 (78%), Gaps = 0/37 (0%)
Query 28 NKVREYSTMAGLVVTGNLTAGKISTSLMLSSYNDQRS 64
NK+RE +T AG+V+TGN+ GK +T+L+L+ N++ S
Sbjct 1370 NKIREVTTPAGVVLTGNMLIGKKTTNLILNDINERNS 1406
>A0A8E1Z4Q1 RHS repeat protein [Acinetobacter haemolyticus]
Length=1563
Score = 42.0 bits (97), Expect = 8e-09
Identities = 18/37 (49%), Positives = 29/37 (78%), Gaps = 0/37 (0%)
Query 28 NKVREYSTMAGLVVTGNLTAGKISTSLMLSSYNDQRS 64
NK+RE +T AG+V+TGN+ GK +T+L+L+ N++ S
Sbjct 1456 NKIREVTTPAGVVLTGNMLIGKKTTNLILNDINERNS 1492
Lambda K H a alpha
0.320 0.126 0.349 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 516754
Database: 60582e25a4634e5024d2197f0a6aa7ae.TrEMBL.fasta
Posted date: Jun 1, 2024 1:23 PM
Number of letters in database: 10,906
Number of sequences in database: 9
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
