BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 74a4c7eb006858fa955d056ba48d0d06.SwissProt.fasta
8 sequences; 3,355 total letters
Query= ACIAD2728
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
P22494 Protein UmuC [Salmonella typhimurium (strain LT2 / SGSC141... 52.4 2e-13
P18642 Protein ImpB [Salmonella typhimurium] 51.6 4e-13
P04152 Protein UmuC [Escherichia coli (strain K12)] 49.7 2e-12
P23832 Protein SamB [Salmonella typhimurium] 48.9 3e-12
P07375 Protein MucB [Escherichia coli] 47.0 2e-11
P14303 Protein MucB [Salmonella typhimurium] 47.0 2e-11
Q9HQT4 DNA polymerase IV [Halobacterium salinarum (strain ATCC 70... 33.5 9e-07
B0R4P0 DNA polymerase IV [Halobacterium salinarum (strain ATCC 29... 33.5 9e-07
>P22494 Protein UmuC [Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720)]
Length=422
Score = 52.4 bits (124), Expect = 2e-13
Identities = 22/35 (63%), Positives = 28/35 (80%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FAL D+N+ Y SCE +F P L GRPV+VLS+NDG
Sbjct 1 MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDG 35
>P18642 Protein ImpB [Salmonella typhimurium]
Length=424
Score = 51.6 bits (122), Expect = 4e-13
Identities = 25/42 (60%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG---QRSP 57
+FAL DIN+ Y SCE++F P L PVIVLS+NDG RSP
Sbjct 1 MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSP 42
>P04152 Protein UmuC [Escherichia coli (strain K12)]
Length=422
Score = 49.7 bits (117), Expect = 2e-12
Identities = 21/35 (60%), Positives = 27/35 (77%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FAL D+N Y SCE +F P L G+PV+VLS+NDG
Sbjct 1 MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDG 35
>P23832 Protein SamB [Salmonella typhimurium]
Length=424
Score = 48.9 bits (115), Expect = 3e-12
Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FAL D+N+ Y SCE++F P L R V+VLS+NDG
Sbjct 1 MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDG 35
>P07375 Protein MucB [Escherichia coli]
Length=420
Score = 47.0 bits (110), Expect = 2e-11
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FALID+N Y SCE+ F P L R V VLS+NDG
Sbjct 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDG 35
>P14303 Protein MucB [Salmonella typhimurium]
Length=421
Score = 47.0 bits (110), Expect = 2e-11
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 0/35 (0%)
Query 19 IFALIDINNAYVSCERIFEPKLNGRPVIVLSSNDG 53
+FALID+N Y SCE+ F P L R V VLS+NDG
Sbjct 1 MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDG 35
>Q9HQT4 DNA polymerase IV [Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1)]
Length=411
Score = 33.5 bits (75), Expect = 9e-07
Identities = 15/31 (48%), Positives = 20/31 (65%), Gaps = 0/31 (0%)
Query 17 QRIFALIDINNAYVSCERIFEPKLNGRPVIV 47
+RI +D++ Y SCER EP L G PV+V
Sbjct 15 ERIVVHVDMDCFYASCERRREPALRGAPVVV 45
>B0R4P0 DNA polymerase IV [Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1)]
Length=411
Score = 33.5 bits (75), Expect = 9e-07
Identities = 15/31 (48%), Positives = 20/31 (65%), Gaps = 0/31 (0%)
Query 17 QRIFALIDINNAYVSCERIFEPKLNGRPVIV 47
+RI +D++ Y SCER EP L G PV+V
Sbjct 15 ERIVVHVDMDCFYASCERRREPALRGAPVVV 45
Lambda K H a alpha
0.328 0.141 0.422 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 112428
Database: 74a4c7eb006858fa955d056ba48d0d06.SwissProt.fasta
Posted date: May 9, 2024 9:13 PM
Number of letters in database: 3,355
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
