BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 14e2f601480089de35178f1fd2976887.SwissProt.fasta
21 sequences; 3,631 total letters
Query= ACIAD2729
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
P0A275 Protein MucA [Salmonella typhimurium] 111 8e-35
P0A276 Protein MucA [Escherichia coli] 111 8e-35
P0AG13 Protein UmuD [Shigella flexneri] 105 1e-32
P0AG12 Protein UmuD [Escherichia coli O157:H7] 105 1e-32
P0AG11 Protein UmuD [Escherichia coli (strain K12)] 105 1e-32
Q5J3U9 Protein ImpA [Salmonella choleraesuis (strain SC-B67)] 96.7 4e-29
Q7M1C0 Protein ImpA [Escherichia coli] 96.7 4e-29
Q7BSM9 Protein ImpA [Shigella flexneri] 96.7 4e-29
P18641 Protein ImpA [Salmonella typhimurium] 96.7 4e-29
P22493 Protein UmuD [Salmonella typhimurium (strain LT2 / SGSC141... 96.3 4e-29
P23831 Protein SamA [Salmonella typhimurium (strain LT2 / SGSC141... 95.1 1e-28
Q87ZB9 LexA repressor 1 [Pseudomonas syringae pv. tomato (strain ... 79.0 8e-22
A4XSN5 LexA repressor [Pseudomonas mendocina (strain ymp)] 78.6 1e-21
P0A153 LexA repressor 1 [Pseudomonas putida (strain ATCC 47054 / ... 75.9 1e-20
P0A154 LexA repressor [Pseudomonas putida] 75.9 1e-20
Q13ZI7 LexA repressor [Paraburkholderia xenovorans (strain LB400)] 73.2 2e-19
A9IR25 LexA repressor [Bordetella petrii (strain ATCC BAA-461 / D... 72.8 2e-19
P37452 LexA repressor [Pseudomonas aeruginosa (strain ATCC 15692 ... 70.5 1e-18
Q07267 LexA repressor [Providencia rettgeri] 66.6 3e-17
P0A7C2 LexA repressor [Escherichia coli (strain K12)] 64.7 2e-16
P0A273 LexA repressor [Salmonella typhimurium (strain LT2 / SGSC1... 61.2 3e-15
>P0A275 Protein MucA [Salmonella typhimurium]
Length=146
Score = 111 bits (277), Expect = 8e-35
Identities = 60/132 (45%), Positives = 86/132 (65%), Gaps = 6/132 (5%)
Query 69 TKIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDID 128
++++ IP +R++AG PSPAQ + +Q L+L+EY VR+ +AT+ ++ + SM D I
Sbjct 12 SRVHSIPFYLQRISAGFPSPAQGYEKQELNLHEYCVRHPSATYFLRVSGSSMEDGRIHDG 71
Query 129 DPLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQE 188
D L+VDRS+TA G IV+A + NEFTVKRL++ P+ L N DF YID E
Sbjct 72 DVLVVDRSLTASHGSIVVACIHNEFTVKRLLL-----RPRPCLMPMNKDFPVYYIDPDNE 126
Query 189 LV-IWGVVTYNL 199
V IWGVVT++L
Sbjct 127 SVEIWGVVTHSL 138
>P0A276 Protein MucA [Escherichia coli]
Length=146
Score = 111 bits (277), Expect = 8e-35
Identities = 60/132 (45%), Positives = 86/132 (65%), Gaps = 6/132 (5%)
Query 69 TKIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDID 128
++++ IP +R++AG PSPAQ + +Q L+L+EY VR+ +AT+ ++ + SM D I
Sbjct 12 SRVHSIPFYLQRISAGFPSPAQGYEKQELNLHEYCVRHPSATYFLRVSGSSMEDGRIHDG 71
Query 129 DPLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQE 188
D L+VDRS+TA G IV+A + NEFTVKRL++ P+ L N DF YID E
Sbjct 72 DVLVVDRSLTASHGSIVVACIHNEFTVKRLLL-----RPRPCLMPMNKDFPVYYIDPDNE 126
Query 189 LV-IWGVVTYNL 199
V IWGVVT++L
Sbjct 127 SVEIWGVVTHSL 138
>P0AG13 Protein UmuD [Shigella flexneri]
Length=139
Score = 105 bits (262), Expect = 1e-32
Identities = 61/134 (46%), Positives = 83/134 (62%), Gaps = 5/134 (4%)
Query 70 KIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDD 129
+I PL ++ V G PSPA ++VEQ +DLN+ L+++ +AT+ VKA+ SM+D GI D
Sbjct 11 EIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGD 70
Query 130 PLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQEL 189
LIVD +ITA GDIVIA VD EFTVK+L + P V L N + I I L
Sbjct 71 LLIVDSAITASHGDIVIAAVDGEFTVKKLQL-----RPTVQLIPMNSAYSPITISSEDTL 125
Query 190 VIWGVVTYNLKPMR 203
++GVV + +K MR
Sbjct 126 DVFGVVIHVVKAMR 139
>P0AG12 Protein UmuD [Escherichia coli O157:H7]
Length=139
Score = 105 bits (262), Expect = 1e-32
Identities = 61/134 (46%), Positives = 83/134 (62%), Gaps = 5/134 (4%)
Query 70 KIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDD 129
+I PL ++ V G PSPA ++VEQ +DLN+ L+++ +AT+ VKA+ SM+D GI D
Sbjct 11 EIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGD 70
Query 130 PLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQEL 189
LIVD +ITA GDIVIA VD EFTVK+L + P V L N + I I L
Sbjct 71 LLIVDSAITASHGDIVIAAVDGEFTVKKLQL-----RPTVQLIPMNSAYSPITISSEDTL 125
Query 190 VIWGVVTYNLKPMR 203
++GVV + +K MR
Sbjct 126 DVFGVVIHVVKAMR 139
>P0AG11 Protein UmuD [Escherichia coli (strain K12)]
Length=139
Score = 105 bits (262), Expect = 1e-32
Identities = 61/134 (46%), Positives = 83/134 (62%), Gaps = 5/134 (4%)
Query 70 KIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDD 129
+I PL ++ V G PSPA ++VEQ +DLN+ L+++ +AT+ VKA+ SM+D GI D
Sbjct 11 EIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGD 70
Query 130 PLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQEL 189
LIVD +ITA GDIVIA VD EFTVK+L + P V L N + I I L
Sbjct 71 LLIVDSAITASHGDIVIAAVDGEFTVKKLQL-----RPTVQLIPMNSAYSPITISSEDTL 125
Query 190 VIWGVVTYNLKPMR 203
++GVV + +K MR
Sbjct 126 DVFGVVIHVVKAMR 139
>Q5J3U9 Protein ImpA [Salmonella choleraesuis (strain SC-B67)]
Length=145
Score = 96.7 bits (239), Expect = 4e-29
Identities = 54/132 (41%), Positives = 80/132 (61%), Gaps = 6/132 (5%)
Query 66 PNPTKIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGI 125
P+ Y PL +R AG PSPA ++ EQ LDLN Y + ATF ++A+ SM AG+
Sbjct 11 PSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGESMNQAGV 70
Query 126 DIDDPLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDE 185
D L+VDR+ + GDIVIA +D EFTVKRL++ P + +++P+F+ +Y
Sbjct 71 QNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPR---PALEPVSDSPEFRTLY--- 124
Query 186 GQELVIWGVVTY 197
+ + I+GVVT+
Sbjct 125 PENICIFGVVTH 136
>Q7M1C0 Protein ImpA [Escherichia coli]
Length=145
Score = 96.7 bits (239), Expect = 4e-29
Identities = 54/132 (41%), Positives = 80/132 (61%), Gaps = 6/132 (5%)
Query 66 PNPTKIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGI 125
P+ Y PL +R AG PSPA ++ EQ LDLN Y + ATF ++A+ SM AG+
Sbjct 11 PSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGESMNQAGV 70
Query 126 DIDDPLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDE 185
D L+VDR+ + GDIVIA +D EFTVKRL++ P + +++P+F+ +Y
Sbjct 71 QNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPR---PALEPVSDSPEFRTLY--- 124
Query 186 GQELVIWGVVTY 197
+ + I+GVVT+
Sbjct 125 PENICIFGVVTH 136
>Q7BSM9 Protein ImpA [Shigella flexneri]
Length=145
Score = 96.7 bits (239), Expect = 4e-29
Identities = 54/132 (41%), Positives = 80/132 (61%), Gaps = 6/132 (5%)
Query 66 PNPTKIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGI 125
P+ Y PL +R AG PSPA ++ EQ LDLN Y + ATF ++A+ SM AG+
Sbjct 11 PSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGESMNQAGV 70
Query 126 DIDDPLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDE 185
D L+VDR+ + GDIVIA +D EFTVKRL++ P + +++P+F+ +Y
Sbjct 71 QNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPR---PALEPVSDSPEFRTLY--- 124
Query 186 GQELVIWGVVTY 197
+ + I+GVVT+
Sbjct 125 PENICIFGVVTH 136
>P18641 Protein ImpA [Salmonella typhimurium]
Length=145
Score = 96.7 bits (239), Expect = 4e-29
Identities = 54/132 (41%), Positives = 80/132 (61%), Gaps = 6/132 (5%)
Query 66 PNPTKIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGI 125
P+ Y PL +R AG PSPA ++ EQ LDLN Y + ATF ++A+ SM AG+
Sbjct 11 PSGDDSYVRPLFADRCQAGFPSPATDYAEQELDLNSYCISRPAATFFLRASGESMNQAGV 70
Query 126 DIDDPLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDE 185
D L+VDR+ + GDIVIA +D EFTVKRL++ P + +++P+F+ +Y
Sbjct 71 QNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKRLLLRPR---PALEPVSDSPEFRTLY--- 124
Query 186 GQELVIWGVVTY 197
+ + I+GVVT+
Sbjct 125 PENICIFGVVTH 136
>P22493 Protein UmuD [Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720)]
Length=139
Score = 96.3 bits (238), Expect = 4e-29
Identities = 56/131 (43%), Positives = 80/131 (61%), Gaps = 5/131 (4%)
Query 70 KIYQIPLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDD 129
+I +P + V G PSPA +++EQ +DLNE LV + ++T+ VKA+ SM++AGI D
Sbjct 11 EIIPLPFFSYLVPCGFPSPAADYIEQRIDLNELLVSHPSSTYFVKASGDSMIEAGISDGD 70
Query 130 PLIVDRSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQEL 189
L+VD S A GDIVIA ++ EFTVKRL + P V L N ++ I + L
Sbjct 71 LLVVDSSRNADHGDIVIAAIEGEFTVKRLQL-----RPTVQLIPMNGAYRPIPVGSEDTL 125
Query 190 VIWGVVTYNLK 200
I+GVVT+ +K
Sbjct 126 DIFGVVTFIIK 136
>P23831 Protein SamA [Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720)]
Length=140
Score = 95.1 bits (235), Expect = 1e-28
Identities = 55/122 (45%), Positives = 73/122 (60%), Gaps = 8/122 (7%)
Query 75 PLATERVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVD 134
PL TER AG PSPA ++ E+ LDLN Y +R ATF V+A SM + G+ D ++VD
Sbjct 17 PLFTERCPAGFPSPAADYTEEELDLNAYCIRRPAATFFVRAIGDSMKEMGLHSGDLMVVD 76
Query 135 RSITAKAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGV 194
++ GDIVIA D EFTVKRL + P++ L NP + +Y +EL I+GV
Sbjct 77 KAEKPMQGDIVIAETDGEFTVKRLQL-----KPRIALLPINPAYPTLY---PEELQIFGV 128
Query 195 VT 196
VT
Sbjct 129 VT 130
>Q87ZB9 LexA repressor 1 [Pseudomonas syringae pv. tomato (strain
ATCC BAA-871 / DC3000)]
Length=202
Score = 79.0 bits (193), Expect = 8e-22
Identities = 49/116 (42%), Positives = 71/116 (61%), Gaps = 6/116 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P AQ+H+E+S ++N + +A ++++ + +SM D GI D L V + A
Sbjct 85 RVAAGAPILAQQHIEESCNINPSFF-HPSANYLLRVHGMSMKDVGILDGDLLAVHTTREA 143
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYID-EGQELVIWGV 194
+ G IV+A + +E TVKR + KVWL AENPDF I +D + QELVI G+
Sbjct 144 RNGQIVVARIGDEVTVKRFKRE----GSKVWLLAENPDFAPIEVDLKDQELVIEGL 195
Score = 16.2 bits (30), Expect = 7.4
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
Query 155 VKRLMIDHHFHPPKVWLKAE 174
+KR + D+ F P + + E
Sbjct 15 IKRCLEDNGFPPTRAEIAQE 34
>A4XSN5 LexA repressor [Pseudomonas mendocina (strain ymp)]
Length=204
Score = 78.6 bits (192), Expect = 1e-21
Identities = 50/116 (43%), Positives = 70/116 (60%), Gaps = 6/116 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P AQ+HVE+S +N + A ++++ +SM D GI D L V + A
Sbjct 87 RVAAGAPILAQQHVEESCQINPAFF-HPKADYLLRVRGMSMKDIGIFDGDLLAVHTTREA 145
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYID-EGQELVIWGV 194
+ G IV+A +D+E TVKR + + KVWL AENP+F I +D E Q+LVI G+
Sbjct 146 RNGQIVVARLDDEVTVKRFKREGN----KVWLIAENPEFAPIEVDLEQQDLVIEGL 197
>P0A153 LexA repressor 1 [Pseudomonas putida (strain ATCC 47054
/ DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=202
Score = 75.9 bits (185), Expect = 1e-20
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P A++H+EQS ++N + A ++++ + +SM D GI D L V A
Sbjct 85 RVAAGAPILAEQHIEQSCNINPAFFHPQ-ADYLLRVHGMSMKDVGIFDGDLLAVHTCREA 143
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYID-EGQELVIWGV 194
+ G IV+A + +E TVKR + KVWL AENP+F I +D + QELVI G+
Sbjct 144 RNGQIVVARIGDEVTVKRFKRE----GSKVWLLAENPEFAPIEVDLKEQELVIEGL 195
Score = 16.2 bits (30), Expect = 7.4
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
Query 155 VKRLMIDHHFHPPKVWLKAE 174
+KR + D+ F P + + E
Sbjct 15 IKRCLEDNGFPPTRAEIAQE 34
>P0A154 LexA repressor [Pseudomonas putida]
Length=202
Score = 75.9 bits (185), Expect = 1e-20
Identities = 48/116 (41%), Positives = 69/116 (59%), Gaps = 6/116 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P A++H+EQS ++N + A ++++ + +SM D GI D L V A
Sbjct 85 RVAAGAPILAEQHIEQSCNINPAFFHPQ-ADYLLRVHGMSMKDVGIFDGDLLAVHTCREA 143
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYID-EGQELVIWGV 194
+ G IV+A + +E TVKR + KVWL AENP+F I +D + QELVI G+
Sbjct 144 RNGQIVVARIGDEVTVKRFKRE----GSKVWLLAENPEFAPIEVDLKEQELVIEGL 195
Score = 16.2 bits (30), Expect = 7.4
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
Query 155 VKRLMIDHHFHPPKVWLKAE 174
+KR + D+ F P + + E
Sbjct 15 IKRCLEDNGFPPTRAEIAQE 34
>Q13ZI7 LexA repressor [Paraburkholderia xenovorans (strain LB400)]
Length=216
Score = 73.2 bits (178), Expect = 2e-19
Identities = 48/123 (39%), Positives = 69/123 (56%), Gaps = 6/123 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P AQEH+ Q + L ++ +++K LSM DAGI D L V + A
Sbjct 96 RVAAGSPILAQEHISQHYACDPALFSSK-PDYLLKVRGLSMRDAGIFDGDLLAVQKKSEA 154
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQ-ELVIWGVVTYN 198
K G IVIA + ++ TVKRL P + L AENPD++NI+++ G E + G+
Sbjct 155 KDGQIVIARLGDDVTVKRL----KRRPNGLELIAENPDYENIFVETGSAEFALEGIAVGL 210
Query 199 LKP 201
++P
Sbjct 211 IRP 213
>A9IR25 LexA repressor [Bordetella petrii (strain ATCC BAA-461
/ DSM 12804 / CCUG 43448)]
Length=224
Score = 72.8 bits (177), Expect = 2e-19
Identities = 46/115 (40%), Positives = 65/115 (57%), Gaps = 5/115 (4%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P A EHVE+ + ++ L + +++K +SM DAGI D L V R+ A
Sbjct 104 RVAAGSPILAAEHVEREVGVDVDLFA-QTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEA 162
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQELVIWGV 194
+ G IV+A + +E TVKRL H ++ L ENPDF I +D QE + G+
Sbjct 163 RNGQIVVARLGDEVTVKRL----QRHQGRIELLPENPDFSPIVVDGTQEFALEGI 213
>P37452 LexA repressor [Pseudomonas aeruginosa (strain ATCC 15692
/ DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C /
PRS 101 / PAO1)]
Length=204
Score = 70.5 bits (171), Expect = 1e-18
Identities = 45/116 (39%), Positives = 67/116 (58%), Gaps = 6/116 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P A++++E+S +N N A ++++ +SM D GI D L V + A
Sbjct 87 RVAAGAPILAEQNIEESCRINPAFF-NPRADYLLRVRGMSMKDIGILDGDLLAVHVTREA 145
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYID-EGQELVIWGV 194
+ G +V+A + E TVKR + KVWL AENP+F I +D + QEL+I G+
Sbjct 146 RNGQVVVARIGEEVTVKRFKRE----GSKVWLLAENPEFAPIEVDLKEQELIIEGL 197
Score = 18.9 bits (37), Expect = 0.99
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
Query 155 VKRLMIDHHFHPPKVWLKAE 174
+KR + DH F P + + E
Sbjct 15 IKRCLEDHGFPPTRAEIAQE 34
>Q07267 LexA repressor [Providencia rettgeri]
Length=205
Score = 66.6 bits (161), Expect = 3e-17
Identities = 41/109 (38%), Positives = 63/109 (58%), Gaps = 5/109 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P AQEH+E ++ L + +A F+++ N +SM D GI D L V ++
Sbjct 84 RVAAGEPLLAQEHIESHYQVDPELFK-PHADFLLRVNGMSMKDIGIMDGDLLAVHKTQNV 142
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQE 188
G +V+A +++E TVKR + +V L AENP+F+ I +D Q+
Sbjct 143 HNGQVVVARIEDEVTVKRFKQQGN----RVELIAENPEFEPIVVDLRQQ 187
>P0A7C2 LexA repressor [Escherichia coli (strain K12)]
Length=202
Score = 64.7 bits (156), Expect = 2e-16
Identities = 41/109 (38%), Positives = 63/109 (58%), Gaps = 5/109 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P AQ+H+E ++ L + NA F+++ + +SM D GI D L V ++
Sbjct 81 RVAAGEPLLAQQHIEGHYQVDPSLFK-PNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDV 139
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYIDEGQE 188
+ G +V+A +D+E TVKRL + KV L EN +F+ I +D Q+
Sbjct 140 RNGQVVVARIDDEVTVKRLKKQGN----KVELLPENSEFKPIVVDLRQQ 184
>P0A273 LexA repressor [Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720)]
Length=202
Score = 61.2 bits (147), Expect = 3e-15
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 5/105 (5%)
Query 80 RVAAGLPSPAQEHVEQSLDLNEYLVRNENATFIVKANSLSMLDAGIDIDDPLIVDRSITA 139
RVAAG P AQ+H+E ++ L + +A F+++ + +SM D GI D L V ++
Sbjct 81 RVAAGEPLLAQQHIEGHYQVDPSLFK-PSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDV 139
Query 140 KAGDIVIAMVDNEFTVKRLMIDHHFHPPKVWLKAENPDFQNIYID 184
+ G +V+A +D+E TVKRL + KV L EN +F I +D
Sbjct 140 RNGQVVVARIDDEVTVKRLKKQGN----KVELLPENSEFTPIVVD 180
Lambda K H a alpha
0.320 0.136 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 457724
Database: 14e2f601480089de35178f1fd2976887.SwissProt.fasta
Posted date: May 9, 2024 7:03 PM
Number of letters in database: 3,631
Number of sequences in database: 21
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
