BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: bbb0ff9403fee926263235234d4b9e42.SwissProt.fasta
12 sequences; 2,557 total letters
Query= ACIAD2740
Length=210
Score E
Sequences producing significant alignments: (Bits) Value
P67431 HTH-type transcriptional repressor NemR [Escherichia coli ... 134 2e-43
P67430 HTH-type transcriptional repressor NemR [Escherichia coli ... 134 2e-43
Q9RAJ1 HTH-type transcriptional repressor DhaR [Mycobacterium sp.... 96.3 2e-28
Q3J6K8 Transcriptional regulator AcuR [Cereibacter sphaeroides (s... 83.2 2e-23
P42097 Uncharacterized HTH-type transcriptional regulator in lacX... 51.6 6e-12
O34619 HTH-type transcriptional regulator LmrA [Bacillus subtilis... 50.1 2e-11
P42105 Uncharacterized HTH-type transcriptional regulator YxaF [B... 50.1 2e-11
O31500 Uncharacterized HTH-type transcriptional regulator YerO [B... 47.4 3e-10
Q9RMY4 Uncharacterized HTH-type transcriptional regulator pXO2-48... 46.2 5e-10
P40950 Uncharacterized HTH-type transcriptional regulator YuxN [B... 46.2 8e-10
P94548 Fatty acid metabolism regulator protein [Bacillus subtilis... 43.9 3e-09
P28815 Transposon Tn10 TetC protein [Escherichia coli] 40.8 4e-08
>P67431 HTH-type transcriptional repressor NemR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=199
Score = 134 bits (338), Expect = 2e-43
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 2/186 (1%)
Query 13 RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQI 72
R+H+L +G L L++GF G+GL E+LKT+ VPKGSFYHYF SKEAFG +L+ + + Y
Sbjct 10 REHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQ 69
Query 73 RLNQLWTT-ETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLIMND 131
RL +L + E + RD+++ Y Q + + CL VK++AEV DLSEDMR M+
Sbjct 70 RLTELLQSGEGNYRDRILAYYQ-QTLNQFCQHGTISGCLTVKLSAEVCDLSEDMRSAMDK 128
Query 132 GVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALE 191
G + +IA ++ + G++ + P AQV+Y ++LGA L +K+ + PL AL
Sbjct 129 GARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRSFEPLENALA 188
Query 192 STKMML 197
K ++
Sbjct 189 HVKNII 194
>P67430 HTH-type transcriptional repressor NemR [Escherichia coli
(strain K12)]
Length=199
Score = 134 bits (338), Expect = 2e-43
Identities = 75/186 (40%), Positives = 114/186 (61%), Gaps = 2/186 (1%)
Query 13 RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQI 72
R+H+L +G L L++GF G+GL E+LKT+ VPKGSFYHYF SKEAFG +L+ + + Y
Sbjct 10 REHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVAMLERHYAAYHQ 69
Query 73 RLNQLWTT-ETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLIMND 131
RL +L + E + RD+++ Y Q + + CL VK++AEV DLSEDMR M+
Sbjct 70 RLTELLQSGEGNYRDRILAYYQ-QTLNQFCQHGTISGCLTVKLSAEVCDLSEDMRSAMDK 128
Query 132 GVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQALE 191
G + +IA ++ + G++ + P AQV+Y ++LGA L +K+ + PL AL
Sbjct 129 GARGVIALLSQALENGRENHCLTFCGEPLQQAQVLYALWLGANLQAKISRSFEPLENALA 188
Query 192 STKMML 197
K ++
Sbjct 189 HVKNII 194
>Q9RAJ1 HTH-type transcriptional repressor DhaR [Mycobacterium
sp. (strain GP1)]
Length=198
Score = 96.3 bits (238), Expect = 2e-28
Identities = 58/179 (32%), Positives = 97/179 (54%), Gaps = 6/179 (3%)
Query 13 RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQI 72
RQH+++ G + L +G+ G +Q+I + VPKGSFY++FESKEAFG ++L+ + SD Q
Sbjct 7 RQHLVEKGTQVFLERGYSGSAVQDITAAAEVPKGSFYNHFESKEAFGGQVLQEFFSDLQR 66
Query 73 RLNQ-LWTTETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLIMND 131
++ L +L NY + E + CLI + E++ LS+ +R +
Sbjct 67 TISSTLEDASVPPVRRLQNYFAAII-----ETLDGQGCLIGNFSVELSPLSDVVRTELLR 121
Query 132 GVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQAL 190
++ + I GQ+ GSI+ + PD+LA + + GA L K+ +++ PL Q L
Sbjct 122 IFEQWVKPFQKCIIEGQETGSIRRDLAPDLLADFLIASWQGAILRMKIERNREPLDQFL 180
>Q3J6K8 Transcriptional regulator AcuR [Cereibacter sphaeroides
(strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG
2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)]
Length=219
Score = 83.2 bits (204), Expect = 2e-23
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 0/173 (0%)
Query 14 QHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIR 73
Q ++ +G + KG+ VG+ EILK + VPKGSFYHYF +K FG L++ Y + +
Sbjct 30 QSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARL 89
Query 74 LNQLWTTETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLIMNDGV 133
L+Q + + A + ++ + CL+ + E+ L +D R + +
Sbjct 90 LDQAFLDGSLAPLARLRLFTRMAEEGMARHGFRRGCLVGNLGQEMGALPDDFRAALIGVL 149
Query 134 KRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPL 186
+ R A L R Q G + PD LA+ + + GA L +KL PL
Sbjct 150 ETWQRRTAQLFREAQACGELSADHDPDALAEAFWIGWEGAILRAKLELRPDPL 202
>P42097 Uncharacterized HTH-type transcriptional regulator in
lacX 3'region [Lactococcus lactis subsp. lactis]
Length=196
Score = 51.6 bits (122), Expect = 6e-12
Identities = 29/115 (25%), Positives = 57/115 (50%), Gaps = 2/115 (2%)
Query 13 RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQI 72
++ IL + L+ +KG+ G + +IL + KG FY+YF+SK+ ++ +++ +Q
Sbjct 10 KEKILTATEQLIYKKGYTGTSINDILDETATGKGQFYYYFDSKKEACLAVIDNHVKIWQK 69
Query 73 R-LNQLWTTETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMR 126
LN + + + S L L W+ ++ C + + E++ L ED R
Sbjct 70 HLLNGILSRDESPLANLKEMLD-WIYSDHAQKKIYYGCPVGNLVIELSALDEDFR 123
>O34619 HTH-type transcriptional regulator LmrA [Bacillus subtilis
(strain 168)]
Length=188
Score = 50.1 bits (118), Expect = 2e-11
Identities = 49/178 (28%), Positives = 75/178 (42%), Gaps = 13/178 (7%)
Query 13 RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFE-SKEAFGCEL---LKHYIS 68
R+ IL + L +G+ G GL +I+K SG PKGS Y++F KE E +K YI
Sbjct 7 REKILSAATRLFQLQGYYGTGLNQIIKESGAPKGSLYYHFPGGKEQLAIEAVNEMKEYIR 66
Query 69 DYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDMRLI 128
+ T + L C + TE E + +AAE + SE +R
Sbjct 67 QKIADCMEACTDPAEGIQAFLKELSC--QFSCTED--IEGLPVGLLAAETSLKSEPLREA 122
Query 129 MNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPL 186
++ K + + +R Q G ++ + V+ M G LLS K+ PL
Sbjct 123 CHEAYKEWASVYEEKLR---QTGCSESRA--KEASTVVNAMIEGGILLSLTAKNSTPL 175
>P42105 Uncharacterized HTH-type transcriptional regulator YxaF
[Bacillus subtilis (strain 168)]
Length=191
Score = 50.1 bits (118), Expect = 2e-11
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 13/189 (7%)
Query 13 RQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYF-ESKEAFGCELLKHYISDYQ 71
R+ IL + L +G+ GL +I+K SG PKGS YH+F KE E + Y
Sbjct 8 REKILHTASRLFQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVT-YTGKIV 66
Query 72 IRLNQLWTTETSARDKLMNYLQCWVKDPATEQSWAESCL---IVKMAAEVADLSEDMRLI 128
L Q E+S + +Q ++K A++ ES + +A+E A +SE +R +
Sbjct 67 EHLIQQSMDESS---DPVEAIQLFIKKTASQFDNTESIKGIPVGLLASETALISEPLRTV 123
Query 129 MNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKLYKHKAPLFQ 188
K A A R + G + + L +I M G +LS K K PL
Sbjct 124 CMKVFKSWEAVFA---RKLMENGFAEEEA--NQLGTLINSMIEGGIMLSLTNKDKTPLLL 178
Query 189 ALESTKMML 197
E +++
Sbjct 179 IAEQIPVLV 187
>O31500 Uncharacterized HTH-type transcriptional regulator YerO
[Bacillus subtilis (strain 168)]
Length=289
Score = 47.4 bits (111), Expect = 3e-10
Identities = 21/56 (38%), Positives = 33/56 (59%), Gaps = 0/56 (0%)
Query 12 KRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYI 67
K++ I+ + L +KGF +QEI G+ KG+FY +F+SKEA ++YI
Sbjct 4 KKERIIKTSIRLFAKKGFAATTIQEIASECGISKGAFYLHFKSKEALLLSACEYYI 59
>Q9RMY4 Uncharacterized HTH-type transcriptional regulator pXO2-48/BXB0055/GBAA_pXO2_0055
[Bacillus anthracis]
Length=196
Score = 46.2 bits (108), Expect = 5e-10
Identities = 37/175 (21%), Positives = 78/175 (45%), Gaps = 7/175 (4%)
Query 8 KSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYI 67
K + ++ I+++ +L G +Q+I+ + +PKGS Y F++KE +L Y
Sbjct 3 KVDKVKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKNKEEI---VLAAYD 59
Query 68 SDYQI---RLNQLWTTETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSED 124
+I ++ + +A DK++ + +D A A C ++ A E + +
Sbjct 60 KSGEIMWSHFHKAMENKKTAIDKILAIFLVY-QDAANNPPIAGGCPLLNSAIESTGVFPE 118
Query 125 MRLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIYQMYLGAALLSKL 179
++ G + MA LI+ G ++ ++ + LA + GA + S++
Sbjct 119 LQKAAAKGYDDTVMLMASLIKEGIEKQELKEDIDIISLASFLASSMEGAIMASRV 173
>P40950 Uncharacterized HTH-type transcriptional regulator YuxN
[Bacillus subtilis (strain 168)]
Length=291
Score = 46.2 bits (108), Expect = 8e-10
Identities = 25/74 (34%), Positives = 38/74 (51%), Gaps = 0/74 (0%)
Query 12 KRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQ 71
K + I+++ L +KG+ +QEI K + KG+FY YF SKEA +L +Y
Sbjct 4 KEKLIIETALKLFAQKGYNSTSVQEIAKECKISKGAFYIYFPSKEALLLSMLNYYYDKTF 63
Query 72 IRLNQLWTTETSAR 85
R+ + T S R
Sbjct 64 TRILNIKTKGDSPR 77
>P94548 Fatty acid metabolism regulator protein [Bacillus subtilis
(strain 168)]
Length=194
Score = 43.9 bits (102), Expect = 3e-09
Identities = 33/162 (20%), Positives = 74/162 (46%), Gaps = 5/162 (3%)
Query 6 VKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKH 65
+K+ K I+D+ ++ G+ + +I K +GV G+ Y YF++KE L K
Sbjct 1 MKQKRPKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKE 60
Query 66 YISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQSWAESCLIVKMAAEVADLSEDM 125
+ + R+ + + +A++KL + A + + L + E+ + ++
Sbjct 61 KMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHN-----LAIVTQLELRQSNLEL 115
Query 126 RLIMNDGVKRLIARMADLIRIGQQEGSIQTSVVPDVLAQVIY 167
R +N+ +K + + ++ G Q G I+ + + Q+I+
Sbjct 116 RQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIF 157
>P28815 Transposon Tn10 TetC protein [Escherichia coli]
Length=197
Score = 40.8 bits (94), Expect = 4e-08
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query 4 HQVKKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELL 63
HQ + ++ Q +++S L + KG+ V + EI + V KG+FYH+F++K+ +LL
Sbjct 6 HQQENFKSTYQSLVNSARILFVEKGYQAVSIDEISGKALVTKGAFYHHFKNKK----QLL 61
Query 64 KHYISDYQIRLNQLWTTET 82
I ++ TT+T
Sbjct 62 SACYKQQLIMIDAYITTKT 80
Score = 16.9 bits (32), Expect = 3.0
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 0/20 (0%)
Query 175 LLSKLYKHKAPLFQALESTK 194
LLS YK + + A +TK
Sbjct 60 LLSACYKQQLIMIDAYITTK 79
Lambda K H a alpha
0.323 0.135 0.400 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 361372
Database: bbb0ff9403fee926263235234d4b9e42.SwissProt.fasta
Posted date: May 9, 2024 1:59 AM
Number of letters in database: 2,557
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
