BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: efa2be739959527de683493e882ecd9c.SwissProt.fasta
           1 sequences; 450 total letters



Query= ACIAD2753

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

B0TYD1 tRNA modification GTPase MnmE [Francisella philomiragia su...  36.2    6e-07


>B0TYD1 tRNA modification GTPase MnmE [Francisella philomiragia 
subsp. philomiragia (strain ATCC 25017 / FSC 153 / O#319-036)]
Length=450

 Score = 36.2 bits (82),  Expect = 6e-07
 Identities = 34/121 (28%), Positives = 54/121 (45%), Gaps = 19/121 (16%)

Query  102  EFTAQNCPIHLQDNFIKFVNNILEKELSAYRFVDEQLTDITDEQEIESIETAINSSNKFS  161
            E  A++    LQ +F K +NN+LEK +    +V+  +     E+EI  +E          
Sbjct  136  ETAAKSAAKSLQGDFSKEINNLLEKLIYLRMYVEASID--FPEEEINFLE----------  183

Query  162  GTKIHLKAALSLLTDRKKP--DYRNSVKESISAVEALCVVLSDDPKATLGASLNSIEKSH  219
              KIH     + L D  K   D +NS K+    VE + ++L   P A   + LN++    
Sbjct  184  DQKIH-----NSLQDIYKTILDVKNSCKQGAILVEGITLILVGKPNAGKSSLLNALAGKE  238

Query  220  S  220
            S
Sbjct  239  S  239


 Score = 17.3 bits (33),  Expect = 0.62
 Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)

Query  60   VSYWHNFFKLPLDDMPLDFD  79
            ++Y HN   L L ++PL+ D
Sbjct  331  ITYVHNKIDL-LKEVPLNHD  349



Lambda      K        H        a         alpha
   0.321    0.136    0.400    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 105250


  Database: efa2be739959527de683493e882ecd9c.SwissProt.fasta
    Posted date:  May 30, 2024  6:19 PM
  Number of letters in database: 450
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40