BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 47c9e34d5b62f73f2dc7589599f23382.SwissProt.fasta
17 sequences; 4,178 total letters
Query= ACIAD2778
Length=315
Score E
Sequences producing significant alignments: (Bits) Value
Q00753 Msm operon regulatory protein [Streptococcus mutans seroty... 57.0 9e-13
P43461 Uncharacterized HTH-type transcriptional regulator in cgkA... 54.3 2e-12
Q65Q30 HTH-type transcriptional activator RhaR [Mannheimia succin... 53.5 1e-11
Q52620 Regulatory protein PqrA [Proteus vulgaris] 50.1 3e-11
O33813 Lactose operon transcription activator [Staphylococcus xyl... 52.4 3e-11
P31449 Uncharacterized HTH-type transcriptional regulator YidL [E... 52.0 4e-11
P43464 Transcriptional activator AggR [Escherichia coli] 48.5 5e-10
P55922 Transcriptional activator RamA [Enterobacter cloacae] 43.9 3e-09
P0A2S4 Multiple antibiotic resistance protein MarA [Salmonella ty... 43.9 4e-09
P0A2S6 Multiple antibiotic resistance protein MarA [Salmonella en... 43.9 4e-09
P0ACH5 Multiple antibiotic resistance protein MarA [Escherichia c... 43.9 4e-09
O31522 HTH-type transcriptional regulator YesS [Bacillus subtilis... 44.3 2e-08
Q48413 Transcriptional activator RamA [Klebsiella pneumoniae] 40.8 4e-08
P40865 HTH-type transcriptional activator RhaR [Salmonella typhim... 17.7 4.7
B4TPR0 HTH-type transcriptional activator RhaR [Salmonella schwar... 17.7 4.7
>Q00753 Msm operon regulatory protein [Streptococcus mutans serotype
c (strain ATCC 700610 / UA159)]
Length=278
Score = 57.0 bits (136), Expect = 9e-13
Identities = 35/131 (27%), Positives = 75/131 (57%), Gaps = 7/131 (5%)
Query 190 SSIDLLHLEGAALELMSLL-----LGNNQKSNEIPSS-VQRTIFILENEFEKKITIRTLA 243
+S++ L + G +L++ L L + ++SN + V + I+ +++ + + +A
Sbjct 137 TSVNELLMVGELYKLLAALIEEFPLSHLEESNSSTKAYVNQVKKIIHSQYGSSLRVNDIA 196
Query 244 KQVGINECDLKKIFKEYTGKTIGHYLLENRMRCAQILLKE-GVSIEKVANQIGYSSTQYF 302
K++ ++ L KIF++ T +I Y+L+ RM+ +Q LL+ +SI +++N +G+S + F
Sbjct 197 KKLNLSRSYLYKIFRKSTNLSIKEYILQVRMKRSQYLLENPKLSIAEISNSVGFSDSLAF 256
Query 303 KKIYERYFSYS 313
K ++ YF S
Sbjct 257 SKAFKNYFGKS 267
Score = 19.6 bits (39), Expect = 1.2
Identities = 12/47 (26%), Positives = 23/47 (49%), Gaps = 3/47 (6%)
Query 122 HLQEHKEMSLISLDFNQSFLEIMESNSLNSDFANFFLSEPSTALKTI 168
+L E+ ++S+ + + F +S + + F N+F PS K I
Sbjct 232 YLLENPKLSIAEISNSVGF---SDSLAFSKAFKNYFGKSPSKFRKEI 275
>P43461 Uncharacterized HTH-type transcriptional regulator in
cgkA 5'region [Pseudoalteromonas carrageenovora]
Length=166
Score = 54.3 bits (129), Expect = 2e-12
Identities = 30/93 (32%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query 222 VQRTIFILENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRMRCA-QIL 280
VQ + +EN + I I T+A VG++ L K FK T KTI + ++E R+ A ++L
Sbjct 66 VQNAMLYIENNYFNDINIDTVAFSVGVSRSYLVKQFKLATNKTINNRIIEVRIEQAKKVL 125
Query 281 LKEGVSIEKVANQIGYSSTQYFKKIYERYFSYS 313
LK+ S+ + A ++G++++ YF ++++ +Y+
Sbjct 126 LKK--SVTETAYEVGFNNSNYFATVFKKRTNYT 156
>Q65Q30 HTH-type transcriptional activator RhaR [Mannheimia succiniciproducens
(strain MBEL55E)]
Length=276
Score = 53.5 bits (127), Expect = 1e-11
Identities = 35/134 (26%), Positives = 68/134 (51%), Gaps = 5/134 (4%)
Query 183 LNIPSAQSSIDLLHL-EGAALELMSLLLGNNQKSNEIPSSVQR--TIF-ILENEFEKKIT 238
L I S +++ +HL E L+++ L+ Q+ N+ S + + ++F L ++
Sbjct 130 LEIESKKTNKSSMHLSEAIFLQILILICRTQQQENKAYSDISKLESLFSALNQSISQEFY 189
Query 239 IRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRM-RCAQILLKEGVSIEKVANQIGYS 297
+ +Q + +++IFK+ T TI YL + R+ R A +L S+ +A + GYS
Sbjct 190 LADFCRQHQLAVSSVRRIFKQQTNMTIAQYLQKLRLCRAATLLRNTSESVANIAIRCGYS 249
Query 298 STQYFKKIYERYFS 311
+ YF ++ + FS
Sbjct 250 DSNYFSSVFGKTFS 263
>Q52620 Regulatory protein PqrA [Proteus vulgaris]
Length=122
Score = 50.1 bits (118), Expect = 3e-11
Identities = 27/86 (31%), Positives = 54/86 (63%), Gaps = 3/86 (3%)
Query 229 LENEFEKK--ITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENR-MRCAQILLKEGV 285
LE + ++ I I T+A + G ++ L++IFK++ G T+G Y+ + R + A+ L ++ +
Sbjct 13 LETQLQRNEGIKIDTIANKSGYSKWHLQRIFKDFKGCTLGEYVRKRRLLEAAKSLQEKDM 72
Query 286 SIEKVANQIGYSSTQYFKKIYERYFS 311
SI +A G+SS F +I++++F+
Sbjct 73 SILDIALMYGFSSQATFTRIFKKHFN 98
>O33813 Lactose operon transcription activator [Staphylococcus
xylosus]
Length=279
Score = 52.4 bits (124), Expect = 3e-11
Identities = 27/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query 218 IPSSVQRTIFILENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRM-RC 276
+ +Q + + ++K IT+ +AK V I L K+FK+ G + YL RM
Sbjct 169 VNEDIQHAVDFINTNYQKHITVEDVAKSVNITRSHLYKLFKKNLGCSPKEYLTYIRMYHA 228
Query 277 AQILLKEGVSIEKVANQIGYSSTQYFKKIYERYFSYS 313
+Q+L+ I ++ Q+GY F K + ++F S
Sbjct 229 SQLLIHTSTLISDISRQVGYKDPLLFSKNFTKHFEIS 265
>P31449 Uncharacterized HTH-type transcriptional regulator YidL
[Escherichia coli (strain K12)]
Length=297
Score = 52.0 bits (123), Expect = 4e-11
Identities = 32/145 (22%), Positives = 75/145 (52%), Gaps = 2/145 (1%)
Query 170 IPNKNVLHQAHYLLNIPSAQSSIDLLHLEGAALELMSLLLGNNQKSNEIPSSVQRTIFIL 229
I N+ + A + + + ++++ + L + + L+ + +K + +++ I L
Sbjct 135 IYNQELTEVAELITSPEAIKNNLAVAFLTKIIYQWICLMYADGKKDPQ-RRQIEKLIATL 193
Query 230 ENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRMRCAQILLK-EGVSIE 288
+++ ++ +A + +E L+++F YTGKT Y L+ R+ A LLK +G S+
Sbjct 194 HASLQQRWSVADMAATIPCSEAWLRRLFLRYTGKTPKEYYLDARLDLALSLLKQQGNSVG 253
Query 289 KVANQIGYSSTQYFKKIYERYFSYS 313
+VA+ + + + +F K ++ F Y+
Sbjct 254 EVADTLNFFDSFHFSKAFKHKFGYA 278
Score = 18.5 bits (36), Expect = 2.7
Identities = 9/19 (47%), Positives = 10/19 (53%), Gaps = 0/19 (0%)
Query 276 CAQILLKEGVSIEKVANQI 294
C +ILLK G I N I
Sbjct 71 CGKILLKNGEQITLHGNCI 89
>P43464 Transcriptional activator AggR [Escherichia coli]
Length=265
Score = 48.5 bits (114), Expect = 5e-10
Identities = 25/84 (30%), Positives = 50/84 (60%), Gaps = 4/84 (5%)
Query 229 LENEFEKKITIRTLAKQVGINECDLKK-IFKEYTGKTIGHYLLENRM-RCAQILLKEGVS 286
+E + K+ T+ +A + ++E ++K + EY T L+++RM + A +LL
Sbjct 170 IEKDLSKRWTLAIIADEFNVSEITIRKRLESEYI--TFNQILMQSRMSKAALLLLDNSYQ 227
Query 287 IEKVANQIGYSSTQYFKKIYERYF 310
I +++N IG+SST YF +++ ++F
Sbjct 228 ISQISNMIGFSSTSYFIRLFVKHF 251
>P55922 Transcriptional activator RamA [Enterobacter cloacae]
Length=113
Score = 43.9 bits (102), Expect = 3e-09
Identities = 20/83 (24%), Positives = 47/83 (57%), Gaps = 1/83 (1%)
Query 229 LENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRMRCAQILLKEG-VSI 287
+++ + + I +A+ G ++ L+++F +Y G+++G Y+ E ++ A L+E +
Sbjct 15 IDDNLHQPLRIEDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLRESDERV 74
Query 288 EKVANQIGYSSTQYFKKIYERYF 310
++ + G+ S Q F +I+ R F
Sbjct 75 YEICLRYGFESQQTFTRIFTRTF 97
>P0A2S4 Multiple antibiotic resistance protein MarA [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=127
Score = 43.9 bits (102), Expect = 4e-09
Identities = 21/83 (25%), Positives = 47/83 (57%), Gaps = 1/83 (1%)
Query 229 LENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRM-RCAQILLKEGVSI 287
+E+ E +++ ++++ G ++ L+++FK+ TG ++G Y+ +M AQ L + I
Sbjct 18 IEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPI 77
Query 288 EKVANQIGYSSTQYFKKIYERYF 310
+A + G+ S Q + ++ YF
Sbjct 78 LYLAERYGFESQQTLTRTFKNYF 100
>P0A2S6 Multiple antibiotic resistance protein MarA [Salmonella
enteritidis]
Length=127
Score = 43.9 bits (102), Expect = 4e-09
Identities = 21/83 (25%), Positives = 47/83 (57%), Gaps = 1/83 (1%)
Query 229 LENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRM-RCAQILLKEGVSI 287
+E+ E +++ ++++ G ++ L+++FK+ TG ++G Y+ +M AQ L + I
Sbjct 18 IEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPI 77
Query 288 EKVANQIGYSSTQYFKKIYERYF 310
+A + G+ S Q + ++ YF
Sbjct 78 LYLAERYGFESQQTLTRTFKNYF 100
>P0ACH5 Multiple antibiotic resistance protein MarA [Escherichia
coli (strain K12)]
Length=127
Score = 43.9 bits (102), Expect = 4e-09
Identities = 21/83 (25%), Positives = 47/83 (57%), Gaps = 1/83 (1%)
Query 229 LENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRM-RCAQILLKEGVSI 287
+E+ E +++ ++++ G ++ L+++FK+ TG ++G Y+ +M AQ L + I
Sbjct 18 IEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPI 77
Query 288 EKVANQIGYSSTQYFKKIYERYF 310
+A + G+ S Q + ++ YF
Sbjct 78 LYLAERYGFESQQTLTRTFKNYF 100
>O31522 HTH-type transcriptional regulator YesS [Bacillus subtilis
(strain 168)]
Length=761
Score = 44.3 bits (103), Expect = 2e-08
Identities = 23/97 (24%), Positives = 51/97 (53%), Gaps = 2/97 (2%)
Query 213 QKSNEIPSSVQRTIFILENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLEN 272
+K+ + +R I ++ ++ I++ + A +G+N L K FK+ TG Y+ +
Sbjct 649 RKNRQQKQLAERVIAMIHEQYMADISLESCADALGMNSYTLSKAFKQVTGINFIDYVTQI 708
Query 273 RM-RCAQILLKEGVSIEKVANQIGYSSTQYFKKIYER 308
R+ + ++L+ I V+ ++GY YF +I+++
Sbjct 709 RIEKAKELLVNTNKKIHDVSEEVGYRH-NYFNRIFKK 744
Score = 18.1 bits (35), Expect = 3.9
Identities = 8/28 (29%), Positives = 14/28 (50%), Gaps = 0/28 (0%)
Query 239 IRTLAKQVGINECDLKKIFKEYTGKTIG 266
I ++++VG +IFK+ G G
Sbjct 724 IHDVSEEVGYRHNYFNRIFKKQVGMPPG 751
>Q48413 Transcriptional activator RamA [Klebsiella pneumoniae]
Length=113
Score = 40.8 bits (94), Expect = 4e-08
Identities = 18/84 (21%), Positives = 47/84 (56%), Gaps = 1/84 (1%)
Query 229 LENEFEKKITIRTLAKQVGINECDLKKIFKEYTGKTIGHYLLENRMRCAQILLKE-GVSI 287
+++ + + I +A+ G ++ L+++F +Y G+++G Y+ E ++ A L++ +
Sbjct 15 IDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLRDTDQRV 74
Query 288 EKVANQIGYSSTQYFKKIYERYFS 311
+ + G+ S Q F +++ R F+
Sbjct 75 YDICLKYGFDSQQTFTRVFTRTFN 98
>P40865 HTH-type transcriptional activator RhaR [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=282
Score = 17.7 bits (34), Expect = 4.7
Identities = 8/30 (27%), Positives = 14/30 (47%), Gaps = 0/30 (0%)
Query 276 CAQILLKEGVSIEKVANQIGYSSTQYFKKI 305
C Q E V ++ Q G + QY +++
Sbjct 199 CQQEQCSERVLRQQFRAQTGMTINQYLRQV 228
>B4TPR0 HTH-type transcriptional activator RhaR [Salmonella schwarzengrund
(strain CVM19633)]
Length=282
Score = 17.7 bits (34), Expect = 4.7
Identities = 8/30 (27%), Positives = 14/30 (47%), Gaps = 0/30 (0%)
Query 276 CAQILLKEGVSIEKVANQIGYSSTQYFKKI 305
C Q E V ++ Q G + QY +++
Sbjct 199 CQQEQCSERVLRQQFRAQTGMTINQYLRQV 228
Lambda K H a alpha
0.321 0.136 0.398 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 921510
Database: 47c9e34d5b62f73f2dc7589599f23382.SwissProt.fasta
Posted date: May 19, 2024 9:18 PM
Number of letters in database: 4,178
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
