BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 01245863fb63a01157b4ee74c98353ec.SwissProt.fasta
13 sequences; 3,315 total letters
Query= ACIAD2780
Length=85
Score E
Sequences producing significant alignments: (Bits) Value
P0CF82 Transposase InsF for insertion sequence IS3D [Escherichia ... 69.7 2e-19
P0CF81 Transposase InsF for insertion sequence IS3C [Escherichia ... 69.7 2e-19
P0CF80 Transposase InsF for insertion sequence IS3B [Escherichia ... 69.7 2e-19
P0CF85 Transposase InsF for insertion sequence IS3 [Escherichia c... 69.7 2e-19
P0CF79 Transposase InsF for insertion sequence IS3A [Escherichia ... 69.7 2e-19
Q9JMT3 Transposase InsF for insertion sequence IS3fB [Escherichia... 69.3 3e-19
P35878 Transposase for insertion sequence element IS904 [Lactococ... 59.3 1e-15
P16940 Insertion element IS600 uncharacterized 31 kDa protein [Sh... 51.2 9e-13
P16942 Transposase for insertion sequence element IS629 [Shigella... 40.8 5e-09
Q9JMS8 Uncharacterized protein YuaL [Escherichia coli (strain K12)] 36.6 3e-08
P19769 Putative transposase InsK for insertion sequence element I... 37.7 6e-08
Q47718 Putative transposase InsO for insertion sequence element I... 36.6 1e-07
O05086 Uncharacterized transposase-like protein HI_1721 [Haemophi... 36.2 2e-07
>P0CF82 Transposase InsF for insertion sequence IS3D [Escherichia
coli (strain K12)]
Length=288
Score = 69.7 bits (169), Expect = 2e-19
Identities = 30/73 (41%), Positives = 48/73 (66%), Gaps = 0/73 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLL 60
V++DL+SR ++GW S R+ +L CDA A+ R+ P ++VH+D+G +YCS D++ L
Sbjct 150 VVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQL 209
Query 61 LTNNCLPSMSRRG 73
+N SMS +G
Sbjct 210 KRHNLRGSMSAKG 222
>P0CF81 Transposase InsF for insertion sequence IS3C [Escherichia
coli (strain K12)]
Length=288
Score = 69.7 bits (169), Expect = 2e-19
Identities = 30/73 (41%), Positives = 48/73 (66%), Gaps = 0/73 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLL 60
V++DL+SR ++GW S R+ +L CDA A+ R+ P ++VH+D+G +YCS D++ L
Sbjct 150 VVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQL 209
Query 61 LTNNCLPSMSRRG 73
+N SMS +G
Sbjct 210 KRHNLRGSMSAKG 222
>P0CF80 Transposase InsF for insertion sequence IS3B [Escherichia
coli (strain K12)]
Length=288
Score = 69.7 bits (169), Expect = 2e-19
Identities = 30/73 (41%), Positives = 48/73 (66%), Gaps = 0/73 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLL 60
V++DL+SR ++GW S R+ +L CDA A+ R+ P ++VH+D+G +YCS D++ L
Sbjct 150 VVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQL 209
Query 61 LTNNCLPSMSRRG 73
+N SMS +G
Sbjct 210 KRHNLRGSMSAKG 222
>P0CF85 Transposase InsF for insertion sequence IS3 [Escherichia
coli O111:H-]
Length=288
Score = 69.7 bits (169), Expect = 2e-19
Identities = 30/73 (41%), Positives = 48/73 (66%), Gaps = 0/73 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLL 60
V++DL+SR ++GW S R+ +L CDA A+ R+ P ++VH+D+G +YCS D++ L
Sbjct 150 VVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQL 209
Query 61 LTNNCLPSMSRRG 73
+N SMS +G
Sbjct 210 KRHNLRGSMSAKG 222
>P0CF79 Transposase InsF for insertion sequence IS3A [Escherichia
coli (strain K12)]
Length=288
Score = 69.7 bits (169), Expect = 2e-19
Identities = 30/73 (41%), Positives = 48/73 (66%), Gaps = 0/73 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLL 60
V++DL+SR ++GW S R+ +L CDA A+ R+ P ++VH+D+G +YCS D++ L
Sbjct 150 VVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQL 209
Query 61 LTNNCLPSMSRRG 73
+N SMS +G
Sbjct 210 KRHNLRGSMSAKG 222
>Q9JMT3 Transposase InsF for insertion sequence IS3fB [Escherichia
coli (strain K12)]
Length=288
Score = 69.3 bits (168), Expect = 3e-19
Identities = 30/73 (41%), Positives = 48/73 (66%), Gaps = 0/73 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLL 60
V++DL+SR ++GW S R+ +L CDA A+ R+ P ++VH+D+G +YCS D++ L
Sbjct 150 VVIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPWNVIVHTDRGGQYCSADYQAQL 209
Query 61 LTNNCLPSMSRRG 73
+N SMS +G
Sbjct 210 KRHNLRGSMSAKG 222
>P35878 Transposase for insertion sequence element IS904 [Lactococcus
lactis subsp. lactis (strain IL1403)]
Length=253
Score = 59.3 bits (142), Expect = 1e-15
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 0/73 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLL 60
V +D+FSR+IVGW S R+ +LV D F A ++ G++VH+DQG +Y S ++ L
Sbjct 116 VNIDVFSRKIVGWSMSSRMQDKLVRDCFLQACGKEHPQPGLIVHTDQGSQYTSSRYQSTL 175
Query 61 LTNNCLPSMSRRG 73
SMSR+G
Sbjct 176 RQVGAQSSMSRKG 188
>P16940 Insertion element IS600 uncharacterized 31 kDa protein
[Shigella sonnei]
Length=272
Score = 51.2 bits (121), Expect = 9e-13
Identities = 25/70 (36%), Positives = 41/70 (59%), Gaps = 0/70 (0%)
Query 4 DLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLLLTN 63
D+++ IV + R+ +EL A A+ Q P G++ HSD+G +YC+ D+RV+ +
Sbjct 134 DVYTCEIVRYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQS 193
Query 64 NCLPSMSRRG 73
SMSR+G
Sbjct 194 GLKTSMSRKG 203
>P16942 Transposase for insertion sequence element IS629 [Shigella
sonnei]
Length=296
Score = 40.8 bits (94), Expect = 5e-09
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query 2 MLDLFSRRIVGWQTSHRIDRELVCDAFNYAI-ARQGYPTGIMVHSDQGREYCSRDFRVLL 60
++D+F+ IVGW+ S ++ V DA A+ AR+ P+G + HSD+G +Y S + L
Sbjct 152 IIDVFAGYIVGWRVSSSMETTFVLDALEQALWARR--PSGTVHHSDKGSQYVSLAYTQRL 209
Query 61 LTNNCLPSMSRRG 73
L S G
Sbjct 210 KEAGLLASTGSTG 222
>Q9JMS8 Uncharacterized protein YuaL [Escherichia coli (strain
K12)]
Length=69
Score = 36.6 bits (83), Expect = 3e-08
Identities = 16/32 (50%), Positives = 22/32 (69%), Gaps = 0/32 (0%)
Query 42 MVHSDQGREYCSRDFRVLLLTNNCLPSMSRRG 73
M+HSDQG +Y S +++LL + SMSRRG
Sbjct 1 MLHSDQGVQYKSNKYKILLCRYEAMQSMSRRG 32
>P19769 Putative transposase InsK for insertion sequence element
IS150 [Escherichia coli (strain K12)]
Length=283
Score = 37.7 bits (86), Expect = 6e-08
Identities = 20/72 (28%), Positives = 38/72 (53%), Gaps = 0/72 (0%)
Query 2 MLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLLL 61
++DLF+ ++ + S R +V + + A + ++HSDQG +Y R ++ +L
Sbjct 144 VIDLFNNEVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILK 203
Query 62 TNNCLPSMSRRG 73
+ SMSR+G
Sbjct 204 EHGIKQSMSRKG 215
>Q47718 Putative transposase InsO for insertion sequence element
IS911B [Escherichia coli (strain K12)]
Length=198
Score = 36.6 bits (83), Expect = 1e-07
Identities = 18/42 (43%), Positives = 23/42 (55%), Gaps = 0/42 (0%)
Query 1 VMLDLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIM 42
V+LDLF+R+ VGW S D L A A +G P G+M
Sbjct 131 VVLDLFARKPVGWAMSFSPDSRLTMKALEMAWETRGKPVGVM 172
>O05086 Uncharacterized transposase-like protein HI_1721 [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=216
Score = 36.2 bits (82), Expect = 2e-07
Identities = 23/76 (30%), Positives = 37/76 (49%), Gaps = 1/76 (1%)
Query 4 DLFSRRIVGWQTSHRIDRELVCDAFNYAIARQGYPTGIMVHSDQGREYCSRDFRVLLLTN 63
DLF+ I+ + + + E + A+AR I+ HSDQG +Y ++ +L N
Sbjct 83 DLFNNEIIAYDLARSPNFEQITRMMKQAVARLEGAKPIL-HSDQGWQYQMIGYQNILREN 141
Query 64 NCLPSMSRRGLAQYTA 79
SMSR+G Y +
Sbjct 142 GIQQSMSRKGNCLYNS 157
Lambda K H a alpha
0.336 0.144 0.469 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 153647
Database: 01245863fb63a01157b4ee74c98353ec.SwissProt.fasta
Posted date: May 8, 2024 9:35 AM
Number of letters in database: 3,315
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
