BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c48bce61388a1a0cd4272ac01cef247b.SwissProt.fasta
1 sequences; 450 total letters
Query= ACIAD2789
Length=244
Score E
Sequences producing significant alignments: (Bits) Value
Q9ZIJ1 Gluconate permease [Pseudomonas aeruginosa (strain ATCC 15... 34.3 2e-06
>Q9ZIJ1 Gluconate permease [Pseudomonas aeruginosa (strain ATCC
15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C
/ PRS 101 / PAO1)]
Length=450
Score = 34.3 bits (77), Expect = 2e-06
Identities = 30/127 (24%), Positives = 53/127 (42%), Gaps = 24/127 (19%)
Query 21 YDDGHVFTAWIALIGTVMAATCLLCFLAV------TGFD-------LHQIFKPEFALTLS 67
+ DGH F AW+ +IG ++A L +A+ GFD L Q P A+ +
Sbjct 257 FPDGHAFRAWMDMIGHPISALLLALLVALYTFGYARGFDSKKILRLLDQSLAPTAAIVMI 316
Query 68 VKDQVLFRTSMISDCFGFYLPFLVVGVYLWRKLRPSGGLLSDIALVFIVISTMLGITGAV 127
+ F+ +++ G + L V +S I L ++V + + TG+
Sbjct 317 IGAGGGFKQMLVASGVGDVIGHLAVNAQ-----------ISPILLAWLVAAVIRIATGSA 365
Query 128 LQASVLG 134
A++ G
Sbjct 366 TVATITG 372
Score = 21.6 bits (44), Expect = 0.024
Identities = 24/111 (22%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query 115 IVISTMLGITGAVLQASVLGPLAETYMSGDHAAQQAAGVVWATISQGSQNGLWPMEGPTI 174
I+ ++ + A + + G L Y+ G +A+ + +Q P G T+
Sbjct 183 ILYGLIVALPTAAIAGPLFGALVSRYIPGTPSAELVEQIAHEPETQDL-----PSFGVTL 237
Query 175 GLWAIVNGLLLRKNRSSLGLPLSVVGFGYVAFAALLFGGFPQVALLLELIL 225
+ L+L K + + P G + A+ ++ G P ALLL L++
Sbjct 238 ATVLLPVFLMLLKTFADVAFP---DGHAFRAWMDMI--GHPISALLLALLV 283
Score = 17.3 bits (33), Expect = 0.53
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 0/22 (0%)
Query 84 GFYLPFLVVGVYLWRKLRPSGG 105
GF L +G L + + SGG
Sbjct 67 GFVGVILALGTMLGKLMADSGG 88
Score = 16.2 bits (30), Expect = 1.2
Identities = 6/20 (30%), Positives = 13/20 (65%), Gaps = 0/20 (0%)
Query 223 LILLPVQVIWLGLYGISLLR 242
++L+P+ I G+SL++
Sbjct 127 ILLIPLVFIVARRSGVSLIK 146
Score = 14.2 bits (25), Expect = 5.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 0/28 (0%)
Query 183 LLLRKNRSSLGLPLSVVGFGYVAFAALL 210
LLL + +GL + + F F AL+
Sbjct 10 LLLDALVTIIGLIVLITRFKVHPFIALI 37
Score = 13.9 bits (24), Expect = 6.6
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 210 LFGGFPQVALLLELILLPVQVIWL 233
+FG LLL+ ++ + +I L
Sbjct 1 MFGMSHDAYLLLDALVTIIGLIVL 24
Score = 13.9 bits (24), Expect = 6.6
Identities = 6/20 (30%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query 192 LGLPLSVVGFGYVAFAALLF 211
+G+PL G++ L+F
Sbjct 116 VGIPL-FFEIGFILLIPLVF 134
Score = 13.5 bits (23), Expect = 8.7
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 0/20 (0%)
Query 223 LILLPVQVIWLGLYGISLLR 242
++ LP I L+G + R
Sbjct 188 IVALPTAAIAGPLFGALVSR 207
Lambda K H a alpha
0.330 0.145 0.452 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 91152
Database: c48bce61388a1a0cd4272ac01cef247b.SwissProt.fasta
Posted date: May 9, 2024 8:04 AM
Number of letters in database: 450
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
