BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: edbe46ef8080fa1cf9bcab19cf6b79de.TrEMBL.fasta
           2 sequences; 1,291 total letters



Query= ACIAD2803

Length=50
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q6F8S4 Uncharacterized protein [Acinetobacter baylyi (strain ATCC...  105     2e-36
J2KZM7 RHS repeat-associated core domain protein containing prote...  35.4    4e-08


>Q6F8S4 Uncharacterized protein [Acinetobacter baylyi (strain 
ATCC 33305 / BD413 / ADP1)]
Length=49

 Score = 105 bits (261),  Expect = 2e-36
 Identities = 49/49 (100%), Positives = 49/49 (100%), Gaps = 0/49 (0%)

Query  1   MPHNLENLYSKEITLYRGTTYHSLEQEKMLLIQYGQIDGVLPPGSKFYK  49
           MPHNLENLYSKEITLYRGTTYHSLEQEKMLLIQYGQIDGVLPPGSKFYK
Sbjct  1   MPHNLENLYSKEITLYRGTTYHSLEQEKMLLIQYGQIDGVLPPGSKFYK  49


>J2KZM7 RHS repeat-associated core domain protein containing protein 
[Polaromonas sp. CF318]
Length=1242

 Score = 35.4 bits (80),  Expect = 4e-08
 Identities = 16/32 (50%), Positives = 21/32 (66%), Gaps = 0/32 (0%)

Query  18    GTTYHSLEQEKMLLIQYGQIDGVLPPGSKFYK  49
             GT Y  L QEK++LI +    G LPPG+K +K
Sbjct  1211  GTHYQVLTQEKIMLITHYTTHGQLPPGNKIFK  1242


 Score = 17.7 bits (34),  Expect = 0.099
 Identities = 9/24 (38%), Positives = 11/24 (46%), Gaps = 2/24 (8%)

Query  16   YRGTTYHSLEQEKMLLIQYGQIDG  39
            YRG TY S        I +G + G
Sbjct  670  YRGETYTSFNMP--ATITFGNMSG  691


 Score = 14.2 bits (25),  Expect = 2.0
 Identities = 8/31 (26%), Positives = 15/31 (48%), Gaps = 0/31 (0%)

Query  18   GTTYHSLEQEKMLLIQYGQIDGVLPPGSKFY  48
            GTT++   ++ + L    +I G     +K Y
Sbjct  723  GTTWYLNGEDSLGLSYEKEIKGTGITENKHY  753


 Score = 13.5 bits (23),  Expect = 3.8
 Identities = 4/7 (57%), Positives = 6/7 (86%), Gaps = 0/7 (0%)

Query  20   TYHSLEQ  26
            TY +L+Q
Sbjct  295  TYDALDQ  301



Lambda      K        H        a         alpha
   0.328    0.146    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 36221


  Database: edbe46ef8080fa1cf9bcab19cf6b79de.TrEMBL.fasta
    Posted date:  May 20, 2024  1:26 AM
  Number of letters in database: 1,291
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40