BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 35b466ba906cd2fb3e43879ef3495ae5.SwissProt.fasta
10 sequences; 3,949 total letters
Query= ACIAD2855
Length=109
Score E
Sequences producing significant alignments: (Bits) Value
P95453 Probable RNA-binding protein PA4753 [Pseudomonas aeruginos... 100 2e-32
P71376 RNA-binding protein HI_1333 [Haemophilus influenzae (strai... 94.0 6e-30
P0AGK7 RNA-binding protein YhbY [Shigella flexneri] 90.1 2e-28
P0AGK5 RNA-binding protein YhbY [Escherichia coli O6:H1 (strain C... 90.1 2e-28
P0AGK6 RNA-binding protein YhbY [Escherichia coli O157:H7] 90.1 2e-28
P0AGK4 RNA-binding protein YhbY [Escherichia coli (strain K12)] 90.1 2e-28
Q8L7C2 CRM-domain containing factor CFM2, chloroplastic [Arabidop... 42.7 3e-09
Q9FYT6 Chloroplastic group IIA intron splicing facilitator CRS1, ... 37.4 2e-07
Q6YYA3 Chloroplastic group IIA intron splicing facilitator CRS1, ... 36.2 5e-07
F4JVH1 CRM-domain containing factor CFM3B, chloroplastic [Arabido... 35.8 8e-07
>P95453 Probable RNA-binding protein PA4753 [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=104
Score = 100 bits (249), Expect = 2e-32
Identities = 49/103 (48%), Positives = 72/103 (70%), Gaps = 0/103 (0%)
Query 3 ALSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQ 62
AL+ +++K+ + IGH L PV+++ GLTEGV+ E RAL DHELIK+K+A +R+ R
Sbjct 2 ALTQEQKKQFKSIGHHLKPVLIVAENGLTEGVLAELERALNDHELIKVKLALAERDDRRA 61
Query 63 VIDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNLSNLVRHAHI 105
++DEL + ++ VQ IGK+ L+Y+K K N NLSN+ R A I
Sbjct 62 LLDELCAQSRSDLVQSIGKMALVYRKNPKPNKNLSNISRFAGI 104
>P71376 RNA-binding protein HI_1333 [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=99
Score = 94.0 bits (232), Expect = 6e-30
Identities = 45/87 (52%), Positives = 63/87 (72%), Gaps = 0/87 (0%)
Query 1 MAALSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETR 60
M LS ++++ L+ + H LNPVVM+GG GLTEGV+ E AL HELIK+K+AG DRET+
Sbjct 1 MTTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETK 60
Query 61 AQVIDELVQVTGAEAVQKIGKIVLLYK 87
+I+ +V+ T A VQ IG I++LY+
Sbjct 61 QLIINAIVRETKAAQVQTIGHILVLYR 87
>P0AGK7 RNA-binding protein YhbY [Shigella flexneri]
Length=97
Score = 90.1 bits (222), Expect = 2e-28
Identities = 43/93 (46%), Positives = 66/93 (71%), Gaps = 0/93 (0%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
LS ++++ L+ + H L PVV++G GLTEGV+ E +AL HELIK+KIA EDRET+ +
Sbjct 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query 64 IDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNL 96
++ +V+ TGA VQ IGK ++LY+ ++ +L
Sbjct 63 VEAIVRETGACNVQVIGKTLVLYRPTKERKISL 95
>P0AGK5 RNA-binding protein YhbY [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=97
Score = 90.1 bits (222), Expect = 2e-28
Identities = 43/93 (46%), Positives = 66/93 (71%), Gaps = 0/93 (0%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
LS ++++ L+ + H L PVV++G GLTEGV+ E +AL HELIK+KIA EDRET+ +
Sbjct 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query 64 IDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNL 96
++ +V+ TGA VQ IGK ++LY+ ++ +L
Sbjct 63 VEAIVRETGACNVQVIGKTLVLYRPTKERKISL 95
>P0AGK6 RNA-binding protein YhbY [Escherichia coli O157:H7]
Length=97
Score = 90.1 bits (222), Expect = 2e-28
Identities = 43/93 (46%), Positives = 66/93 (71%), Gaps = 0/93 (0%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
LS ++++ L+ + H L PVV++G GLTEGV+ E +AL HELIK+KIA EDRET+ +
Sbjct 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query 64 IDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNL 96
++ +V+ TGA VQ IGK ++LY+ ++ +L
Sbjct 63 VEAIVRETGACNVQVIGKTLVLYRPTKERKISL 95
>P0AGK4 RNA-binding protein YhbY [Escherichia coli (strain K12)]
Length=97
Score = 90.1 bits (222), Expect = 2e-28
Identities = 43/93 (46%), Positives = 66/93 (71%), Gaps = 0/93 (0%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
LS ++++ L+ + H L PVV++G GLTEGV+ E +AL HELIK+KIA EDRET+ +
Sbjct 3 LSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLI 62
Query 64 IDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNL 96
++ +V+ TGA VQ IGK ++LY+ ++ +L
Sbjct 63 VEAIVRETGACNVQVIGKTLVLYRPTKERKISL 95
>Q8L7C2 CRM-domain containing factor CFM2, chloroplastic [Arabidopsis
thaliana]
Length=1011
Score = 42.7 bits (99), Expect = 3e-09
Identities = 26/87 (30%), Positives = 40/87 (46%), Gaps = 0/87 (0%)
Query 8 ERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQVIDEL 67
E +RLR +G L + IG G+TEG++ + E++KI R + D L
Sbjct 170 ELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVL 229
Query 68 VQVTGAEAVQKIGKIVLLYKKAAKQNP 94
TG + + G +LLY+ Q P
Sbjct 230 ETKTGGLVIWRSGSKILLYRGVNYQYP 256
Score = 34.3 bits (77), Expect = 3e-06
Identities = 25/93 (27%), Positives = 46/93 (49%), Gaps = 8/93 (9%)
Query 8 ERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQVIDEL 67
E+ LR+IG + P +++G +G+ +G IE + EL+KI I E A + E+
Sbjct 583 EKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKI-ICNEYSIEAAHKVAEI 641
Query 68 VQ------VTGAEAVQKIGKIVLLYKKAAKQNP 94
++ + E V K G +++Y+ + P
Sbjct 642 LEAESGGILVAVEMVSK-GYAIIVYRGKNYERP 673
Score = 24.6 bits (52), Expect = 0.006
Identities = 23/87 (26%), Positives = 37/87 (43%), Gaps = 3/87 (3%)
Query 4 LSIQERKRLRQIGHALN--PVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRA 61
LS +ER LR+ + P +G + G+ + L + + G T
Sbjct 875 LSNRERLILRKQALKMKKRPPFAVGRSNVVTGLARTLKMHFQKNPLAIVNVKGRANGTSV 934
Query 62 Q-VIDELVQVTGAEAVQKIGKIVLLYK 87
Q VI +L + TGA V + V+LY+
Sbjct 935 QEVIAKLKEETGALLVSQEPSKVILYR 961
Score = 24.3 bits (51), Expect = 0.008
Identities = 18/85 (21%), Positives = 39/85 (46%), Gaps = 1/85 (1%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
L+ E +R++G L +G +G+ + EL KI + + T +++
Sbjct 378 LTDDEMTTIRRLGRPLPCHFALGRNRNLQGLAVAIVKLWEKCELAKIAVKRGVQNTNSEL 437
Query 64 I-DELVQVTGAEAVQKIGKIVLLYK 87
+ +EL +TG + + ++LY+
Sbjct 438 MAEELKWLTGGTLISRDKDFIVLYR 462
Score = 17.7 bits (34), Expect = 1.3
Identities = 19/87 (22%), Positives = 33/87 (38%), Gaps = 15/87 (17%)
Query 5 SIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQVI 64
+I+ER+R I E N+ + E IK + ED E A+
Sbjct 474 AIEERRRQTMI---------------MENSSVHGNKLTENEEEIKPRAVKEDIELEAKDQ 518
Query 65 DELVQVTGAEAVQKIGKIVLLYKKAAK 91
+ +Q ++ Q+ +L K + K
Sbjct 519 KDHIQTHQMKSRQRNSPEAILEKTSMK 545
>Q9FYT6 Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic [Zea mays]
Length=715
Score = 37.4 bits (85), Expect = 2e-07
Identities = 29/105 (28%), Positives = 60/105 (57%), Gaps = 9/105 (9%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
L+ +E+ R+IG ++ +V++G +G+ +GVIEE ++ E++K+ I +++ +
Sbjct 564 LTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKV-ITKQNQTRQIMY 622
Query 64 IDELVQV-TGA--EAVQKI--GKIVLLYKKAAKQNP---NLSNLV 100
L++V TG AV+K+ ++LY+ + P + SNL+
Sbjct 623 AASLLEVETGGILIAVEKLTTSHAIILYRGKNYRRPAKSSFSNLL 667
Score = 26.9 bits (58), Expect = 0.001
Identities = 23/102 (23%), Positives = 43/102 (42%), Gaps = 6/102 (6%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRA-LTDHELIKIKIAGEDRETRAQ 62
L E +RLR++ + G+T+ V++E R + EL ++I R + +
Sbjct 170 LETHELRRLRRLARGIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDR 229
Query 63 VIDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNLSNLVRHAH 104
+ L TG V G + +Y+ + Q +H+H
Sbjct 230 AREILEIKTGGLVVWTKGDMHFVYRGSKYQQN-----AKHSH 266
Score = 23.1 bits (48), Expect = 0.019
Identities = 20/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (8%)
Query 4 LSIQERKRLRQIGHALNPVVMIGG----QGLTEGVIEEANRALTDHELIKIKIAGEDRET 59
L+ +E LR++ L +G QGL +++ ++L +KI I + E
Sbjct 352 LADEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNE- 410
Query 60 RAQVIDELVQVTGAEAVQKIGKIVLLYK 87
Q+ L +TG + + ++LY+
Sbjct 411 --QMAWNLKHLTGGTVILRNKDFIILYR 436
>Q6YYA3 Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic [Oryza sativa subsp. japonica]
Length=725
Score = 36.2 bits (82), Expect = 5e-07
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 0/47 (0%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKI 50
L+ +ER+ R+IG ++ V++G +G+ EGVIEE ++ E++K+
Sbjct 566 LTEEERRIFRKIGLKMDEHVLLGRRGVFEGVIEEIHQHWKHKEVVKV 612
Score = 23.5 bits (49), Expect = 0.014
Identities = 26/105 (25%), Positives = 40/105 (38%), Gaps = 5/105 (5%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEA-NRALTDHELIKIKIAGEDRETRAQ 62
L E +RLR+ G+T+ V+EE + EL ++I R +
Sbjct 155 LEAGELERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDR 214
Query 63 VIDELVQVTGAEAVQKIGKIVLLYKKAAKQNPNLSNLVRHAHIAN 107
+ L TG V G I +Y+ ++ L N RH N
Sbjct 215 AREILEIKTGGLVVWTRGGIHFVYRGSS----YLENAKRHRDFVN 255
Score = 23.5 bits (49), Expect = 0.014
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 7/89 (8%)
Query 3 ALSIQERKRLRQIGHALNPVVMIGG----QGLTEGVIEEANRALTDHELIKIKIAGEDRE 58
AL+ +E LR+ L ++G QGL +++ ++L +K+ I + E
Sbjct 353 ALADEELTYLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHE 412
Query 59 TRAQVIDELVQVTGAEAVQKIGKIVLLYK 87
Q+ L ++TG + + +++Y+
Sbjct 413 ---QMARNLKRLTGGTVILRNKDYIIIYR 438
>F4JVH1 CRM-domain containing factor CFM3B, chloroplastic [Arabidopsis
thaliana]
Length=907
Score = 35.8 bits (81), Expect = 8e-07
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 0/90 (0%)
Query 4 LSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETRAQV 63
LS E RLR + + + G G+T+ V++ E++++KI G ++
Sbjct 222 LSEFELNRLRNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRM 281
Query 64 IDELVQVTGAEAVQKIGKIVLLYKKAAKQN 93
+ L + TG + + G + LY N
Sbjct 282 HEILERKTGGLVIWRSGTSIALYNYKGGSN 311
Score = 31.6 bits (70), Expect = 2e-05
Identities = 23/98 (23%), Positives = 48/98 (49%), Gaps = 4/98 (4%)
Query 1 MAALSIQERKRLRQIGHALNPVVMIGGQGLTEGVIEEANRALTDHELIKIKIAGEDRETR 60
+ ++ +ER +++G + +++G +G+ +G +E + ELIKI + + E
Sbjct 662 LEGITEEERFMFQKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELIKILVKAKTLEGA 721
Query 61 AQVIDELVQVTGA--EAVQKIGK--IVLLYKKAAKQNP 94
+V L +G +V KI K V++Y+ + P
Sbjct 722 QKVAMALEAESGGILVSVDKISKGYAVIVYRGKDYKRP 759
Lambda K H a alpha
0.322 0.137 0.370 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 261997
Database: 35b466ba906cd2fb3e43879ef3495ae5.SwissProt.fasta
Posted date: May 31, 2024 2:56 PM
Number of letters in database: 3,949
Number of sequences in database: 10
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
