BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 99eb8d1b410e8e086a493c62da84c149.SwissProt.fasta
15 sequences; 2,100 total letters
Query= ACIAD2882
Length=134
Score E
Sequences producing significant alignments: (Bits) Value
P69055 Succinate dehydrogenase cytochrome b556 subunit [Escherich... 105 7e-34
P69054 Succinate dehydrogenase cytochrome b556 subunit [Escherich... 105 7e-34
P63725 Succinate dehydrogenase cytochrome b556 subunit [Salmonell... 103 4e-33
P63726 Succinate dehydrogenase cytochrome b556 subunit [Salmonell... 103 4e-33
P51055 Succinate dehydrogenase cytochrome b556 subunit [Coxiella ... 95.9 3e-30
Q59659 Succinate dehydrogenase cytochrome b556 subunit [Paracoccu... 48.9 5e-12
Q68XP1 Succinate dehydrogenase cytochrome b556 subunit [Rickettsi... 43.5 5e-10
P41085 Succinate dehydrogenase cytochrome b556 subunit [Rickettsi... 42.7 9e-10
Q4UKC1 Succinate dehydrogenase cytochrome b556 subunit [Rickettsi... 41.2 3e-09
P35721 Succinate dehydrogenase cytochrome b560 subunit [Marchanti... 41.2 4e-09
P80481 Succinate dehydrogenase cytochrome b560 subunit [Reclinomo... 40.8 6e-09
P70097 Succinate dehydrogenase cytochrome b560 subunit, mitochond... 40.8 8e-09
P35720 Succinate dehydrogenase cytochrome b560 subunit, mitochond... 39.3 3e-08
Q99643 Succinate dehydrogenase cytochrome b560 subunit, mitochond... 37.0 2e-07
D0VWV4 Succinate dehydrogenase cytochrome b560 subunit, mitochond... 35.4 6e-07
>P69055 Succinate dehydrogenase cytochrome b556 subunit [Escherichia
coli O157:H7]
Length=129
Score = 105 bits (261), Expect = 7e-34
Identities = 56/131 (43%), Positives = 85/131 (65%), Gaps = 10/131 (8%)
Query 4 VKSNRPVNLSMGQVLAVNLRSPV-AIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFE 62
VK RPVNL + + R P+ AIASILHR+SGVI F+ + +LLW+L SLSSPEGFE
Sbjct 5 VKKQRPVNLDLQTI-----RFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFE 59
Query 63 YVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEE-LQSGRTAATISLILSV 121
+ I G+ V+ I+W + L +H + G++H++ D G+ EE ++G+ +A IS +++V
Sbjct 60 QA-SAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITV 118
Query 122 IGIIAA--FVW 130
+ + A VW
Sbjct 119 VLSLLAGVLVW 129
>P69054 Succinate dehydrogenase cytochrome b556 subunit [Escherichia
coli (strain K12)]
Length=129
Score = 105 bits (261), Expect = 7e-34
Identities = 56/131 (43%), Positives = 85/131 (65%), Gaps = 10/131 (8%)
Query 4 VKSNRPVNLSMGQVLAVNLRSPV-AIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFE 62
VK RPVNL + + R P+ AIASILHR+SGVI F+ + +LLW+L SLSSPEGFE
Sbjct 5 VKKQRPVNLDLQTI-----RFPITAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFE 59
Query 63 YVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEE-LQSGRTAATISLILSV 121
+ I G+ V+ I+W + L +H + G++H++ D G+ EE ++G+ +A IS +++V
Sbjct 60 QA-SAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITV 118
Query 122 IGIIAA--FVW 130
+ + A VW
Sbjct 119 VLSLLAGVLVW 129
>P63725 Succinate dehydrogenase cytochrome b556 subunit [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=129
Score = 103 bits (256), Expect = 4e-33
Identities = 56/131 (43%), Positives = 85/131 (65%), Gaps = 10/131 (8%)
Query 4 VKSNRPVNLSMGQVLAVNLRSPV-AIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFE 62
VK RPVNL + + R P+ AIASILHR+SGVI F+ + +LLW+L SLSSPEGF+
Sbjct 5 VKKQRPVNLDLQTI-----RFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQ 59
Query 63 YVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEE-LQSGRTAATISLILSV 121
++ G +V+ I+W + L +H I G++H+L D G+ EE ++G+ +A IS +++V
Sbjct 60 QAADIMDG-FIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITV 118
Query 122 IGIIAA--FVW 130
+ + A VW
Sbjct 119 VLSLLAGVLVW 129
>P63726 Succinate dehydrogenase cytochrome b556 subunit [Salmonella
typhi]
Length=129
Score = 103 bits (256), Expect = 4e-33
Identities = 56/131 (43%), Positives = 85/131 (65%), Gaps = 10/131 (8%)
Query 4 VKSNRPVNLSMGQVLAVNLRSPV-AIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFE 62
VK RPVNL + + R P+ AIASILHR+SGVI F+ + +LLW+L SLSSPEGF+
Sbjct 5 VKKQRPVNLDLQTI-----RFPITAIASILHRVSGVITFIAVGILLWLLGTSLSSPEGFQ 59
Query 63 YVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEE-LQSGRTAATISLILSV 121
++ G +V+ I+W + L +H I G++H+L D G+ EE ++G+ +A IS +++V
Sbjct 60 QAADIMDG-FIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEETFEAGQRSAKISFVITV 118
Query 122 IGIIAA--FVW 130
+ + A VW
Sbjct 119 VLSLLAGVLVW 129
>P51055 Succinate dehydrogenase cytochrome b556 subunit [Coxiella
burnetii (strain RSA 493 / Nine Mile phase I)]
Length=125
Score = 95.9 bits (237), Expect = 3e-30
Identities = 46/128 (36%), Positives = 79/128 (62%), Gaps = 4/128 (3%)
Query 4 VKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEY 63
+ + RPVNL + + P+AI SI HR+SG ++FL +P++ ++L ++ +S E F +
Sbjct 1 MNAKRPVNLDLTKFHF----PPMAILSIGHRISGFVLFLCMPLMFYLLHRATASAESFYH 56
Query 64 VKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILSVIG 123
+ ++ N ++L VW+ ++ +FH AG++HL DLGF E + GR +A ++S I
Sbjct 57 LHQLLLHNGWIKLAVWIMLSATLFHLFAGIRHLAMDLGFWESVPEGRISAYTVFVVSFIA 116
Query 124 IIAAFVWI 131
I+ A VWI
Sbjct 117 IVLAGVWI 124
>Q59659 Succinate dehydrogenase cytochrome b556 subunit [Paracoccus
denitrificans]
Length=130
Score = 48.9 bits (115), Expect = 5e-12
Identities = 38/133 (29%), Positives = 70/133 (53%), Gaps = 15/133 (11%)
Query 5 KSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEYV 64
+ NRP++ + QV + L AI SI+ R++G + I ++ W L +++SP F
Sbjct 6 RGNRPLSPHL-QVYRLPL---AAITSIMTRITGHALVAGIVLITWWLVAAVTSPGAFACA 61
Query 65 KTVI---FGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQ----SGRTAATISL 117
V+ G I++ +W L +H +AG++HL D G+ E++ S + S+
Sbjct 62 DWVVRSWLGFIILTGSMWA----LWYHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSV 117
Query 118 ILSVIGIIAAFVW 130
+L+V+ +I FV+
Sbjct 118 VLAVLTLIVFFVF 130
Score = 14.6 bits (26), Expect = 7.8
Identities = 5/12 (42%), Positives = 7/12 (58%), Gaps = 0/12 (0%)
Query 121 VIGIIAAFVWIV 132
V GI+ W+V
Sbjct 38 VAGIVLITWWLV 49
>Q68XP1 Succinate dehydrogenase cytochrome b556 subunit [Rickettsia
typhi (strain ATCC VR-144 / Wilmington)]
Length=124
Score = 43.5 bits (101), Expect = 5e-10
Identities = 22/102 (22%), Positives = 50/102 (49%), Gaps = 7/102 (7%)
Query 30 SILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEYVKTVIFGNILVRLIVWVFVAGLIFHF 89
SILHR++GV +F ++ +L+W L S + + I +++ + F +H
Sbjct 30 SILHRMTGVALFFVVSILVWWLILSKYDNNYLQLARCCI-----IKICLVAFSYAWCYHL 84
Query 90 IAGVKHLLADLGFAEELQSGRTAATISLILSVIGIIAAFVWI 131
G++HL D+G+ +++ ++ S+ ++ +W+
Sbjct 85 CNGIRHLFWDIGYGFSIRAVNITGWCVVVCSI--LLTMLLWV 124
>P41085 Succinate dehydrogenase cytochrome b556 subunit [Rickettsia
prowazekii (strain Madrid E)]
Length=124
Score = 42.7 bits (99), Expect = 9e-10
Identities = 22/102 (22%), Positives = 53/102 (52%), Gaps = 7/102 (7%)
Query 30 SILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEYVKTVIFGNILVRLIVWVFVAGLIFHF 89
SILHR++GV +F ++ +L+W L + S Y++ + ++++ + F +H
Sbjct 30 SILHRMTGVALFFVVSILVWWL---ILSKYDNNYLQ--LASCCIIKICLVAFSYSWCYHL 84
Query 90 IAGVKHLLADLGFAEELQSGRTAATISLILSVIGIIAAFVWI 131
G++HL D+G+ +++ ++ S+ ++ +W+
Sbjct 85 CNGIRHLFWDIGYGFSIKAVNITGWCVVVCSI--LLTMLLWV 124
>Q4UKC1 Succinate dehydrogenase cytochrome b556 subunit [Rickettsia
felis (strain ATCC VR-1525 / URRWXCal2)]
Length=124
Score = 41.2 bits (95), Expect = 3e-09
Identities = 26/103 (25%), Positives = 51/103 (50%), Gaps = 9/103 (9%)
Query 30 SILHRLSGVIVFLLIPVLLWILDKSLSSPEGFEYVKTVIFGNILVRLIVWVFVA-GLIFH 88
SILHR++GV +F + +L W L + S Y++ F N + I V V+ +H
Sbjct 30 SILHRMTGVALFFAVSILAWWL---ILSKYDNNYLQ---FANCCIIKICLVAVSYAWFYH 83
Query 89 FIAGVKHLLADLGFAEELQSGRTAATISLILSVIGIIAAFVWI 131
G++HL D+G+ +++ ++ S+ ++ +W+
Sbjct 84 LCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSI--LLTMLLWV 124
>P35721 Succinate dehydrogenase cytochrome b560 subunit [Marchantia
polymorpha]
Length=137
Score = 41.2 bits (95), Expect = 4e-09
Identities = 43/132 (33%), Positives = 62/132 (47%), Gaps = 16/132 (12%)
Query 4 VKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWIL-----DKSLSSP 58
+K NRP++ L + + SI HR+SG FL VL IL D SL+
Sbjct 1 MKINRPLSPH----LTIYKPQLTSTFSIFHRISGA--FLATMVLFSILFFKIGDLSLTFY 54
Query 59 EGFEYVKTVIFG-NILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISL 117
++Y + F N + +V + L +H GV+HLL DLGF EL T+ I L
Sbjct 55 HFYQYFFFLTFYLNWFIISLVNFTLLALCYHMSNGVRHLLWDLGFFLELSKVYTSGIIML 114
Query 118 ----ILSVIGII 125
L+++ II
Sbjct 115 FCAAFLALLNII 126
>P80481 Succinate dehydrogenase cytochrome b560 subunit [Reclinomonas
americana]
Length=144
Score = 40.8 bits (94), Expect = 6e-09
Identities = 30/108 (28%), Positives = 57/108 (53%), Gaps = 6/108 (6%)
Query 30 SILHRLSGVIVFLLIP---VLLWILDKSLSSPEGFEYVKTVI-FGNILVRLIVWVFVAGL 85
SI HR++G ++ L + ++L +L+ LSS + T+ + L I + + +
Sbjct 39 SIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSIAYTLNQYSGFLFIAISFFLLLFI 98
Query 86 IFHFIAGVKHLLADLGFAEELQSGRTAATISLILSVIGIIAAFVWIVF 133
+H AG++HL+ D G+A E+++ I L L+ + + A WI+F
Sbjct 99 FYHLFAGLRHLVWDAGYALEIENVYLTGYIMLGLAFLFTLIA--WIIF 144
>P70097 Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Cricetulus griseus]
Length=169
Score = 40.8 bits (94), Expect = 8e-09
Identities = 35/107 (33%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query 28 IASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFE----YVKTVIFGNILVRLIVWVFVA 83
+ SI HR +GV L V L+ L +L P FE ++K++ G L+ +V V
Sbjct 66 VMSICHRGTGVA--LSGGVSLFGLS-ALLLPGNFESYLMFIKSLCLGPALIHSAKFVLVF 122
Query 84 GLIFHFIAGVKHLLADLG----FAEELQSGRTAATISLILSVIGIIA 126
L++H + G++HL+ DLG ++ QSG A + +LS +G+ A
Sbjct 123 PLMYHSLNGIRHLIWDLGKGLSISQVYQSG-VAVLMLAVLSSVGLAA 168
>P35720 Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Bos taurus]
Length=169
Score = 39.3 bits (90), Expect = 3e-08
Identities = 33/108 (31%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query 25 PVAIASILHRLSGVIVFLLIPVLLWILDKSL---SSPEGFEYVKTVIFGNILVRLIVWVF 81
P+A+ SI HR +G+ L V L+ L L S E+VK++ G L+ +
Sbjct 64 PMAM-SICHRGTGIA--LSAGVSLFGLSALLVPGSFESHLEFVKSLCLGPALIHTAKFAL 120
Query 82 VAGLIFHFIAGVKHLLADLG---FAEELQSGRTAATISLILSVIGIIA 126
V L++H G++HL+ DLG +L A + +LS +G+ A
Sbjct 121 VFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSSVGLAA 168
>Q99643 Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Homo sapiens]
Length=169
Score = 37.0 bits (84), Expect = 2e-07
Identities = 34/123 (28%), Positives = 62/123 (50%), Gaps = 11/123 (9%)
Query 4 VKSNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFE- 62
+ SNRP++ + + P+A+ SI HR +G+ L V L+ + +L P FE
Sbjct 46 IGSNRPLS---PHITIYSWSLPMAM-SICHRGTGIA--LSAGVSLFGMS-ALLLPGNFES 98
Query 63 ---YVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLIL 119
VK++ G L+ + V L++H G++HL+ DLG ++ + + L+L
Sbjct 99 YLELVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVL 158
Query 120 SVI 122
+V+
Sbjct 159 TVL 161
>D0VWV4 Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
[Sus scrofa]
Length=169
Score = 35.4 bits (80), Expect = 6e-07
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 11/124 (9%)
Query 6 SNRPVNLSMGQVLAVNLRSPVAIASILHRLSGVIVFLLIPVLLWILDKSLSSPEGFE--- 62
SNRP++ + P+A+ SI HR +G+ L V L+ L +L P FE
Sbjct 48 SNRPLS---PHITIYRWSLPMAM-SICHRGTGIA--LSAGVSLFGLS-ALLLPGNFESHL 100
Query 63 -YVKTVIFGNILVRLIVWVFVAGLIFHFIAGVKHLLADLGFAEELQSGRTAATISLILSV 121
VK++ G L+ + V L++H G++HL+ DLG + + + LIL+V
Sbjct 101 ELVKSLCLGPTLIYTAKFGIVFPLMYHTWNGIRHLIWDLGKGLTIPQLTQSGVVVLILTV 160
Query 122 IGII 125
+ +
Sbjct 161 LSSV 164
Lambda K H a alpha
0.335 0.147 0.443 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 165240
Database: 99eb8d1b410e8e086a493c62da84c149.SwissProt.fasta
Posted date: May 19, 2024 8:17 PM
Number of letters in database: 2,100
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
